Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168940765-30374-66852257229.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig267 Length=678
Score E Sequences producing significant alignments: (Bits) Value gi|115445821|ref|NP_001046690.1| Os02g0321900 [Oryza sativa (... 345 9e-95 gi|42407951|dbj|BAD09090.1| putative 60S ribosomal protein L1... 345 9e-95 gi|92898021|gb|ABE94025.1| Ribosomal protein L1 [Medicago trunca 342 6e-94 gi|115441181|ref|NP_001044870.1| Os01g0860300 [Oryza sativa (... 335 7e-92 gi|57471702|gb|AAW50982.1| ribosomal protein L10A [Triticum aest 332 6e-91 gi|30680605|ref|NP_563813.2| structural constituent of riboso... 331 2e-90 gi|15242248|ref|NP_197636.1| structural constituent of riboso... 330 2e-90 gi|18401451|ref|NP_565654.1| structural constituent of riboso... 327 2e-89 gi|25294932|pir||A84674 60S ribosomal protein L10A [imported] - 325 7e-89 gi|47026982|gb|AAT08709.1| 60S ribosomal protein L10A [Hyacinthu 275 1e-73 gi|25294933|pir||C86217 protein T27G7.6 [imported] - Arabidop... 251 1e-66 gi|28193500|emb|CAD28612.1| 60S ribosomal protein l10a [Polytome 249 7e-66 gi|27923844|sp|Q9SW75|RL10A_CHLRE 60S ribosomal protein L10a ... 241 2e-63 gi|45736100|dbj|BAD13131.1| putative 60S ribosomal protein L1... 238 2e-62 gi|115477789|ref|NP_001062490.1| Os08g0558000 [Oryza sativa (... 206 5e-53 gi|115477803|ref|NP_001062497.1| Os08g0558800 [Oryza sativa (... 205 1e-52 gi|56202344|dbj|BAD73824.1| putative Csa-19 [Oryza sativa (japon 194 3e-49 gi|90568398|gb|ABD94129.1| 60S ribosomal protein L10A [Cathay... 174 4e-43 gi|90568396|gb|ABD94128.1| 60S ribosomal protein L10A [Cathaya a 172 8e-43 gi|10444370|gb|AAG17879.1|AF293406_1 60S ribosomal protein L10A 163 5e-40 gi|81028437|gb|ABB54957.1| putative 60S ribosomal protein L10... 160 3e-39 gi|81028505|gb|ABB54959.1| putative 60S ribosomal protein L10... 160 3e-39 gi|81025243|gb|ABB54894.1| putative 60S ribosomal protein L10A [ 159 1e-38 gi|81028614|gb|ABB54963.1| putative 60S ribosomal protein L10... 158 2e-38 gi|81025183|gb|ABB54893.1| putative 60S ribosomal protein L10... 158 2e-38 gi|75756018|gb|ABA27063.1| TO97-3 [Taraxacum officinale] 147 4e-35 gi|116057286|emb|CAL51713.1| unnamed protein product [Ostreococc 144 2e-34 gi|116057958|emb|CAL54161.1| 60S ribosomal protein L10A (ISS) [O 87.8 3e-17 gi|92881069|gb|ABE86025.1| Ribosomal protein L1 [Medicago trunca 58.5 2e-08 gi|115465389|ref|NP_001056294.1| Os05g0558000 [Oryza sativa (... 53.5 7e-07 gi|116058062|emb|CAL54265.1| 60S ribosomal protein-related (ISS) 53.1 9e-07 gi|19310375|gb|AAL84927.1| At2g42650/F14N22.8 [Arabidopsis thali 49.7 1e-05 gi|21805739|gb|AAM76766.1| hypothetical protein [Arabidopsis tha 49.7 1e-05 gi|15227974|ref|NP_181793.1| structural constituent of riboso... 49.7 1e-05 gi|15231102|ref|NP_191425.1| structural constituent of riboso... 48.1 3e-05 gi|116060894|emb|CAL57372.1| 50S ribosomal protein L1 (ISS) [Ost 47.8 4e-05 gi|15221475|ref|NP_172126.1| unknown protein [Arabidopsis tha... 47.0 7e-05 gi|90265137|emb|CAC09505.2| H0711G06.11 [Oryza sativa (indica cu 40.0 0.008 gi|70663903|emb|CAD41501.3| OSJNBa0029H02.15 [Oryza sativa (japo 40.0 0.008 gi|30689119|ref|NP_850375.1| RNA binding / structural constit... 38.1 0.031 gi|4512681|gb|AAD21735.1| hypothetical protein [Arabidopsis t... 33.9 0.58 gi|60393201|gb|AAX19516.1| thionin-like peptide [Triticum aestiv 33.9 0.58 gi|34394236|dbj|BAC84688.1| unknown protein [Oryza sativa (japon 32.7 1.3 gi|115471783|ref|NP_001059490.1| Os07g0429700 [Oryza sativa (... 32.7 1.3 gi|34394237|dbj|BAC84689.1| unknown protein [Oryza sativa (ja... 32.3 1.7 gi|115453959|ref|NP_001050580.1| Os03g0589300 [Oryza sativa (... 31.6 2.9 gi|115471781|ref|NP_001059489.1| Os07g0429600 [Oryza sativa (... 30.8 4.9 gi|30683572|ref|NP_850105.1| structural constituent of riboso... 30.4 6.4 gi|27728675|gb|AAO18731.1| cysteine protease [Gossypium hirsutum 30.0 8.3
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 430 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 678 Length of database: 101054579 Length adjustment: 109 Effective length of query: 569 Effective length of database: 70169538 Effective search space: 8209835946 Effective search space used: 8209835946 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 65 (29.6 bits)