Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927139-31459-67841618801.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig27 Length=459
Score E Sequences producing significant alignments: (Bits) Value gi|92881141|gb|ABE86074.1| PAP fibrillin [Medicago truncatula... 177 1e-44 gi|15236688|ref|NP_191914.1| structural molecule [Arabidopsis... 167 1e-41 gi|115459798|ref|NP_001053499.1| Os04g0551700 [Oryza sativa (... 152 6e-37 gi|38345467|emb|CAE01685.2| OSJNBa0010H02.5 [Oryza sativa (japon 152 6e-37 gi|116055911|emb|CAL57996.1| OSJNBa0010H02.5 [Oryza sativa (ISS) 79.7 4e-15 gi|116309892|emb|CAH66928.1| H0525E10.12 [Oryza sativa (indica c 45.8 6e-05 gi|115458376|ref|NP_001052788.1| Os04g0422000 [Oryza sativa (... 45.8 6e-05 gi|79327456|ref|NP_001031862.1| structural molecule [Arabidop... 42.0 0.001 gi|38679333|gb|AAR26488.1| harpin binding protein 1 [Triticum ae 37.4 0.023 gi|38679317|gb|AAR26480.1| harpin binding protein 1 [Hordeum vul 36.6 0.039 gi|38679331|gb|AAR26487.1| harpin binding protein 1 [Triticum ae 35.8 0.066 gi|38679339|gb|AAR26491.1| harpin binding protein 1 [Zea mays] 35.8 0.066 gi|38679321|gb|AAR26482.1| harpin binding protein 1 [Malus x dom 35.4 0.087 gi|38679327|gb|AAR26485.1| harpin binding protein 1 [Oryza sativ 33.5 0.33 gi|38679323|gb|AAR26483.1| harpin binding protein 1 [Nicotiana t 33.5 0.33 gi|38679325|gb|AAR26484.1| harpin binding protein 1 [Oryza sativ 33.5 0.33 gi|115486133|ref|NP_001068210.1| Os11g0595200 [Oryza sativa (... 33.5 0.33 gi|38679329|gb|AAR26486.1| harpin binding protein 1 [Solanum tub 33.1 0.43 gi|38679319|gb|AAR26481.1| harpin binding protein 1 [Lycopersico 32.7 0.56 gi|38679315|gb|AAR26479.1| harpin binding protein 1 [Glycine max 32.3 0.73 gi|38679335|gb|AAR26489.1| harpin binding protein 1 [Vitis sp. N 32.0 0.96 gi|38679337|gb|AAR26490.1| harpin binding protein 1 [Vitis sp. N 31.6 1.3 gi|32489298|emb|CAE04639.1| OSJNBa0028I23.21 [Oryza sativa (japo 31.2 1.6 gi|18401706|ref|NP_564505.1| unknown protein [Arabidopsis tha... 31.2 1.6 gi|166940|gb|AAA32908.1| osmotin-like protein [Atriplex nummu... 30.4 2.8 gi|110825715|sp|Q38JU2|CRYD_LYCES Cryptochrome DASH, chloropl... 29.3 6.2 gi|92868144|gb|ABE78230.1| PAP fibrillin [Medicago truncatula] 29.3 6.2
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 366 Number of extensions: 8 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 459 Length of database: 101054579 Length adjustment: 103 Effective length of query: 356 Effective length of database: 71869632 Effective search space: 3593481600 Effective search space used: 3593481600 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 62 (28.5 bits)