Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168940944-12454-196239033050.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig275 Length=508
Score E Sequences producing significant alignments: (Bits) Value gi|20218809|emb|CAC84489.1| putative translation factor [Pinus p 217 2e-56 gi|15221783|ref|NP_175831.1| translation initiation factor [A... 214 1e-55 gi|113952523|gb|ABI48954.1| putative protein translation factor 214 1e-55 gi|15236989|ref|NP_194443.1| translation initiation factor [A... 212 7e-55 gi|115464699|ref|NP_001055949.1| Os05g0498400 [Oryza sativa (... 211 1e-54 gi|53791638|dbj|BAD53005.1| putative translation initiation f... 211 1e-54 gi|115472489|ref|NP_001059843.1| Os07g0529800 [Oryza sativa (... 210 2e-54 gi|15239733|ref|NP_200287.1| translation initiation factor [A... 210 2e-54 gi|92892132|gb|ABE91150.1| translation initiation factor SUI1 [M 209 3e-54 gi|3334346|sp|O48650|SUI1_SALBA Protein translation factor SU... 209 3e-54 gi|11135350|sp|Q9SM41|SUI1_SPOST Protein translation factor S... 209 4e-54 gi|77745501|gb|ABB02649.1| unknown [Solanum tuberosum] 209 6e-54 gi|11135352|sp|Q9SQF4|SUI1_BRAOL Protein translation factor S... 208 7e-54 gi|3024657|sp|P56330|SUI1_MAIZE Protein translation factor SU... 208 7e-54 gi|28193048|emb|CAD58628.1| SUI1 protein [Coffea arabica] 206 5e-53 gi|21070377|gb|AAM34279.1|AF508969_1 translation initiation fact 204 1e-52 gi|28193050|emb|CAD58629.1| SUI1 protein [Coffea arabica] 204 2e-52 gi|115440449|ref|NP_001044504.1| Os01g0794500 [Oryza sativa (... 186 5e-47 gi|21842314|gb|AAM77753.1|AF521961_1 translation initiation fact 185 7e-47 gi|7388263|sp|O82569|SUI1_PIMBR Protein translation factor SU... 182 7e-46 gi|18423691|ref|NP_568818.1| translation initiation factor [A... 172 4e-43 gi|5918208|emb|CAB56294.1| putative protein translation factor [ 172 6e-43 gi|116312010|emb|CAJ86367.1| OSIGBa0117N13.11 [Oryza sativa (... 146 3e-35 gi|115460710|ref|NP_001053955.1| Os04g0627900 [Oryza sativa (... 132 9e-31 gi|39546233|emb|CAE04242.3| OSJNBa0089N06.3 [Oryza sativa (japon 132 9e-31 gi|48093518|gb|AAT40136.1| putative translation initiation facto 118 1e-26 gi|116055832|emb|CAL57917.1| Translation initiation factor 1 ... 107 2e-23 gi|499888|gb|AAA53420.1| ORF 78.2 1e-14 gi|116060460|emb|CAL55796.1| Density-regulated protein relate... 38.9 0.010 gi|115435066|ref|NP_001042291.1| Os01g0195500 [Oryza sativa (... 32.7 0.71 gi|55773670|dbj|BAD72209.1| putative density regulated protei... 32.7 0.71 gi|94503774|gb|ABF29696.1| abscisic acid responsive element-b... 32.3 0.93 gi|13775111|gb|AAK39132.1|AF369792_1 bZIP transcription factor 6 32.3 0.93 gi|77551686|gb|ABA94483.1| hypothetical protein LOC_Os11g3693... 32.0 1.2 gi|7573357|emb|CAB87663.1| putative protein [Arabidopsis thalian 31.6 1.6 gi|22326739|ref|NP_196751.2| translation initiation factor [A... 31.6 1.6 gi|8927659|gb|AAF82150.1|AC034256_14 F7H2.14 [Arabidopsis thalia 30.8 2.7 gi|110736616|dbj|BAF00272.1| hypothetical protein [Arabidopsis t 30.4 3.5 gi|79345977|ref|NP_173032.2| unknown protein [Arabidopsis tha... 30.4 3.5 gi|15222558|ref|NP_176572.1| ATP binding / nucleoside-triphos... 30.4 3.5 gi|39104607|dbj|BAC43641.2| putative disease resistance protein 30.4 3.5 gi|92870560|gb|ABE79844.1| E-class P450, group I [Medicago trunc 29.3 7.9
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 358 Number of extensions: 4 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 508 Length of database: 101054579 Length adjustment: 105 Effective length of query: 403 Effective length of database: 71302934 Effective search space: 4563387776 Effective search space used: 4563387776 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)