Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927296-30653-111251362123.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig36 Length=284
Related Structures Score E Sequences producing significant alignments: (Bits) Value gi|18409378|ref|NP_564977.1| ATAMY3; alpha-amylase [Arabidops... 80.1 2e-15 gi|60652321|gb|AAX33233.1| plastid alpha-amylase [Actinidia chin 80.1 2e-15 gi|12325228|gb|AAG52558.1|AC010675_6 putative alpha-amylase; 603 80.1 2e-15 gi|11139274|gb|AAG31655.1| PRLI-interacting factor E [Arabidopsi 80.1 2e-15 gi|60652317|gb|AAX33231.1| plastid alpha-amylase [Malus x domest 76.3 3e-14 gi|115439565|ref|NP_001044062.1| Os01g0715400 [Oryza sativa (... 53.9 2e-07 gi|115458194|ref|NP_001052697.1| Os04g0403300 [Oryza sativa (... 47.4 2e-05 gi|38346145|emb|CAE02023.2| OSJNBb0118P14.5 [Oryza sativa (japon 47.4 2e-05 gi|15222959|ref|NP_177740.1| ATAMY2; alpha-amylase [Arabidops... 46.2 3e-05 gi|6573706|gb|AAF17626.1|AC009978_2 T23E18.6 [Arabidopsis thalia 46.2 3e-05 gi|116059924|emb|CAL55983.1| alpha amylase 2 (IC) [Ostreococcus 44.7 1e-04 gi|46360130|gb|AAS88888.1| AAMYI [Ostreococcus tauri] 44.7 1e-04 gi|60652323|gb|AAX33234.1| cytosolic alpha-amylase [Malus x dome 44.7 1e-04 gi|1220453|gb|AAA91884.1| alpha-amylase 44.7 1e-04 gi|52851182|emb|CAH58639.1| alpha-amylase [Plantago major] 43.5 2e-04 gi|68053506|gb|AAY85174.1| alpha-amylase 2 [Manihot esculenta] 42.7 4e-04 gi|7532799|gb|AAF63239.1|AF153828_1 alpha-amylase [Malus x domes 40.0 0.002 gi|4455243|emb|CAB36742.1| alpha-amylase-like protein [Arabid... 37.4 0.016 gi|18416465|ref|NP_567714.1| AMY3 (ALPHA-AMYLASE-LIKE); alpha... 37.4 0.016 gi|21592633|gb|AAM64582.1| alpha-amylase-like protein [Arabidops 37.0 0.021 gi|86211227|gb|ABC87289.1| putative alpha-amylase [Ceratopteris 36.6 0.027 gi|92870751|gb|ABE79993.1| hypothetical protein MtrDRAFT_AC14... 35.8 0.046 gi|169769|gb|AAA33894.1| alpha-amylase 35.4 0.060 gi|11263719|pir||JC7138 alpha-amylase (EC 3.2.1.1) isozyme III - 35.0 0.078 gi|322850|pir||PC1257 alpha-amylase (EC 3.2.1.1) (clone alpha... 35.0 0.078 gi|115476854|ref|NP_001062023.1| Os08g0473600 [Oryza sativa (... 35.0 0.078 gi|115469938|ref|NP_001058568.1| Os06g0713800 [Oryza sativa (... 34.7 0.10 gi|115479549|ref|NP_001063368.1| Os09g0457600 [Oryza sativa (... 34.7 0.10 gi|92887502|gb|ABE88909.1| Alpha amylase, catalytic region; A... 34.3 0.13 gi|21670851|dbj|BAC02435.1| alpha-amylase [Ipomoea nil] 34.3 0.13 gi|113776|sp|P04748|AMY4_HORVU Alpha-amylase type B isozyme (... 34.3 0.13 gi|3769330|dbj|BAA33879.1| alpha-amylase [Phaseolus vulgaris] 33.9 0.17 gi|20335|emb|CAA39776.1| alpha-amylase [Oryza sativa (japonica c 33.5 0.23 gi|86198284|dbj|BAE47517.2| alpha-amylase [Hyacinthus orientalis 33.5 0.23 gi|1065365|pdb|1AMY| Chain , Alpha-1,4 Glycan-4-Glucanohydr... 33.5 0.23 gi|2851583|sp|P04063|AMY2_HORVU Alpha-amylase type B isozyme ... 33.5 0.23 gi|115448879|ref|NP_001048219.1| Os02g0765400 [Oryza sativa (... 33.1 0.30 gi|20167|emb|CAA34516.1| alpha-amylase [Oryza sativa (japonica c 33.1 0.30 gi|20339|emb|CAA39778.1| alpha-amylase [Oryza sativa (japonica c 33.1 0.30 gi|169753|gb|AAA33885.1| alpha-amylase (EC 3.2.1.1) 33.1 0.30 gi|115479547|ref|NP_001063367.1| Os09g0457400 [Oryza sativa (... 33.1 0.30 gi|115479551|ref|NP_001063369.1| Os09g0457800 [Oryza sativa (... 33.1 0.30 gi|115448881|ref|NP_001048220.1| Os02g0765600 [Oryza sativa (... 33.1 0.30 gi|46805736|dbj|BAD17123.1| putative alpha-amylase precursor ... 33.1 0.30 gi|30962522|dbj|BAC76729.1| alpha-amylase [Vigna angularis] 33.1 0.30 gi|322849|pir||PC1258 alpha-amylase (EC 3.2.1.1) (clone alpha... 33.1 0.30 gi|92887505|gb|ABE88912.1| Alpha amylase, catalytic region [Medi 32.7 0.39 gi|115476856|ref|NP_001062024.1| Os08g0473900 [Oryza sativa (... 32.7 0.39 gi|1220451|gb|AAA91883.1| alpha-amylase 32.7 0.39 gi|169755|gb|AAA33886.1| alpha-amylase (EC 3.2.1.1) 32.7 0.39 gi|169771|gb|AAA33895.1| alpha-amylase 32.7 0.39 gi|78099755|sp|P27933|AMY3D_ORYSA Alpha-amylase isozyme 3D pr... 32.7 0.39 gi|11263717|pir||JC7137 alpha-amylase (EC 3.2.1.1) isozyme I - r 32.7 0.39 gi|166977|gb|AAA32925.1| alpha-amylase 1 32.3 0.51 gi|458456|gb|AAA16513.1| alpha amylase precursor 32.3 0.51 gi|166985|gb|AAA98615.1| alpha-amylase 32.3 0.51 gi|166979|gb|AAA32926.1| alpha-amylase 1 32.3 0.51 gi|295804|emb|CAA33298.1| alpha-amylase [Hordeum vulgare] >gi... 32.3 0.51 gi|228404|prf||1803517A alpha amylase 32.0 0.66 gi|113781|sp|P17859|AMYA_VIGMU Alpha-amylase precursor (1,4-a... 32.0 0.66 gi|426482|gb|AAA50161.1| alpha-amylase 31.6 0.87 gi|116058767|emb|CAL54474.1| alpha amylase 3 (IC) [Ostreococcus 30.8 1.5 gi|166993|gb|AAA32932.1| alpha-amylase type B, EC 3.2.1.1 30.8 1.5 gi|113778|sp|P04750|AMY6_HORVU Alpha-amylase type B isozyme p... 30.8 1.5 gi|113775|sp|P08117|AMY3_WHEAT Alpha-amylase AMY3 precursor (... 30.8 1.5 gi|60652319|gb|AAX33232.1| secreted alpha-amylase [Malus x domes 30.0 2.5 gi|31321914|gb|AAM09952.1| alpha-amylase [Eleusine coracana subs 29.6 3.3 gi|166981|gb|AAA32927.1| alpha-amylase 2 28.9 5.6 gi|71041521|pdb|1RP8|A Chain A, Crystal Structure Of Barley A... 28.9 5.6 gi|41052591|dbj|BAD07933.1| putative COP1 [Oryza sativa (japo... 28.9 5.6 gi|33357016|pdb|1HT6|A Chain A, Crystal Structure At 1.5a Res... 28.9 5.6 gi|113765|sp|P00693|AMY1_HORVU Alpha-amylase type A isozyme p... 28.9 5.6 gi|322847|pir||PC1259 alpha-amylase (EC 3.2.1.1) (clone alpha... 28.9 5.6 gi|108710545|gb|ABF98340.1| expressed protein [Oryza sativa (jap 28.5 7.3 gi|27552541|gb|AAO19364.1| hypothetical protein [Oryza sativa... 28.5 7.3 gi|166983|gb|AAA32928.1| alpha-amylase 2 28.5 7.3
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 170 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 284 Length of database: 101054579 Length adjustment: 64 Effective length of query: 220 Effective length of database: 82920243 Effective search space: 2487607290 Effective search space used: 2487607290 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)