Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927358-10308-69588705820.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig38 Length=551
Score E Sequences producing significant alignments: (Bits) Value gi|30688547|ref|NP_189325.2| ATP binding / shikimate kinase [... 171 1e-42 gi|115433984|ref|NP_001041750.1| Os01g0102600 [Oryza sativa (... 137 3e-32 gi|52076607|dbj|BAD45509.1| unknown protein [Oryza sativa (japon 137 3e-32 gi|15128455|dbj|BAB62639.1| P0402A09.24 [Oryza sativa (japoni... 122 6e-28 gi|115467200|ref|NP_001057199.1| Os06g0225800 [Oryza sativa (... 89.0 1e-17 gi|56805579|dbj|BAD83413.1| shikimate kinase 2 [Oryza sativa (ja 89.0 1e-17 gi|38344899|emb|CAE02970.2| OSJNBb0079B02.2 [Oryza sativa (ja... 87.8 2e-17 gi|114200|sp|Q00497|AROK_LYCES Shikimate kinase, chloroplast ... 86.7 5e-17 gi|76782196|gb|ABA54868.1| putative shikimate kinase [Fagus sylv 82.8 7e-16 gi|56805577|dbj|BAD83412.1| shikimate kinase 1 [Oryza sativa (ja 80.9 3e-15 gi|46849856|gb|AAT02351.1| shikimate kinase [Cucumis sativus] 79.3 8e-15 gi|39104605|dbj|BAC43483.2| putative shikimate kinase precursor 77.4 3e-14 gi|30681570|ref|NP_179785.2| ATP binding / shikimate kinase [Ara 77.0 4e-14 gi|42570867|ref|NP_973507.1| ATP binding / shikimate kinase [Ara 77.0 4e-14 gi|20137565|sp|Q9SJ05|AROK_ARATH Probable shikimate kinase, c... 77.0 4e-14 gi|5042170|emb|CAB44689.1| shikimate kinase-like protein [Ara... 73.6 4e-13 gi|30692396|ref|NP_195664.2| ATP binding / shikimate kinase [... 73.6 4e-13 gi|32488697|emb|CAE03634.1| OSJNBb0003B01.26 [Oryza sativa (japo 50.8 3e-06 gi|115448691|ref|NP_001048125.1| Os02g0749300 [Oryza sativa (... 38.5 0.016 gi|2266947|gb|AAB80714.1| phosphoenolpyruvate carboxylase 1 [Gos 32.3 1.1 gi|30694964|ref|NP_175552.2| alcohol dehydrogenase [Arabidops... 32.0 1.5 gi|12325359|gb|AAG52618.1|AC024261_5 cinnamyl alcohol dehydro... 32.0 1.5 gi|6942300|gb|AAF32399.1|AF224499_1 KNOTTED-1-like homeobox p... 31.6 1.9 gi|21314564|gb|AAM47007.1|AF512995_1 phosphoenolpyruvate carboxy 31.2 2.5 gi|83779596|gb|ABC47614.1| phosphoenolpyruvate carboxylase isofo 30.8 3.2 gi|27948554|gb|AAO25631.1| phosphoenolpyruvate carboxylase [O... 30.8 3.2 gi|115476100|ref|NP_001061646.1| Os08g0366000 [Oryza sativa (... 30.8 3.2 gi|6942297|gb|AAF32398.1|AF224498_1 KNOTTED-1-like homeobox p... 30.8 3.2 gi|92887420|gb|ABE88862.1| C-type lectin; Tetratricopeptide-l... 30.4 4.2 gi|18073874|emb|CAC84957.1| phosphoenolpyruvate carboxylase, ... 30.4 4.2 gi|7768142|emb|CAB90631.1| phosphoenolpyruvate carboxylase [Dend 30.4 4.2 gi|7768121|emb|CAB90621.1| phosphoenolpyruvate carboxylase [Dend 30.4 4.2 gi|18073872|emb|CAC84956.1| phosphoenolpyruvate carboxylase, ... 30.4 4.2 gi|18073870|emb|CAC84955.1| phosphoenolpyruvate carboxylase, ... 30.4 4.2 gi|117649967|gb|ABK54024.1| phosphoenolpyruvate carboxylase [Cit 30.0 5.5 gi|115478504|ref|NP_001062847.1| Os09g0315700 [Oryza sativa (... 30.0 5.5 gi|2145477|emb|CAA62749.1| phosphoenolpyruvate carboxylase [Till 30.0 5.5 gi|51091643|dbj|BAD36412.1| putative phosphoenolpyruvate carb... 30.0 5.5 gi|18073822|emb|CAC84916.1| phosphoenolpyruvate carboxylase, iso 29.6 7.2 gi|18076757|emb|CAC84915.1| phosphoenolpyruvate carboxylase [Zam 29.6 7.2 gi|18073820|emb|CAC84914.1| phosphoenolpyruvate carboxylase [Gin 29.6 7.2 gi|2145426|emb|CAA62827.1| phosphoenolpyruvate carboxylase [Chil 29.6 7.2 gi|21671964|gb|AAM74326.1|AC114474_18 Putative protein with F... 29.6 7.2 gi|30685928|ref|NP_188714.2| ATTOP6B (BRASSINOSTEROID INSENSI... 29.3 9.4 gi|4033349|emb|CAA11414.1| phosphoenolpyrovate carboxylase [Bras 29.3 9.4 gi|24412728|emb|CAD10148.1| phosphoenolpyruvate carboxylase [Cuc 29.3 9.4 gi|18072424|emb|CAC84919.1| phosphoenolpyruvate carboxylase, iso 29.3 9.4 gi|20152211|dbj|BAB89367.1| phosphoenolpyruvate carboxylase [Nic 29.3 9.4 gi|115583|sp|P29194|CAPP2_SORBI Phosphoenolpyruvate carboxyla... 29.3 9.4 gi|9294405|dbj|BAB02486.1| DNA topoisomerase VI subunit B-lik... 29.3 9.4
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 390 Number of extensions: 5 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 551 Length of database: 101054579 Length adjustment: 106 Effective length of query: 445 Effective length of database: 71019585 Effective search space: 5468508045 Effective search space used: 5468508045 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)