RID=1168927385-2229-169713489300.BLASTQ1, Contig39

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927385-2229-169713489300.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

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Score E Sequences producing significant alignments: (Bits) Value gi|92877214|gb|ABE84385.1| conserved hypothetical protein [Medic 34.3 0.13 gi|115442235|ref|NP_001045397.1| Os01g0949200 [Oryza sativa (... 32.0 0.67

gi|115441835|ref|NP_001045197.1| Os01g0916800 [Oryza sativa (... 28.5 7.4

gi|57900437|dbj|BAD87730.1| putative THO complex 2 [Oryza sativa 28.5 7.4

Alignments

 

>gi|92877214|gb|ABE84385.1|  conserved hypothetical protein [Medicago truncatula]
Length=77

 Score = 34.3 bits (77),  Expect = 0.13
 Identities = 16/21 (76%), Positives = 18/21 (85%), Gaps = 0/21 (0%)
 Frame = -1

Query  63  PVGIMAALMFLAFSPSEAIGN  1
           PVGIMAAL+ LAFSPSE + N
Sbjct  41  PVGIMAALVVLAFSPSENVKN  61


>gi|115442235|ref|NP_001045397.1|  Os01g0949200 [Oryza sativa (japonica cultivar-group)]
 gi|113534928|dbj|BAF07311.1|  Os01g0949200 [Oryza sativa (japonica cultivar-group)]
Length=411

 Score = 32.0 bits (71),  Expect = 0.67
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 0/30 (0%)
 Frame = +1

Query  190  HRTTALLLQPCYPQNSYHFPPKGVLRTKYS  279
            H TTA  L PC P + +H PP  V   + S
Sbjct  26   HSTTATTLPPCIPSHLHHTPPPAVCHRRLS  55


>gi|115441835|ref|NP_001045197.1|  Os01g0916800 [Oryza sativa (japonica cultivar-group)]
 gi|113534728|dbj|BAF07111.1|  Os01g0916800 [Oryza sativa (japonica cultivar-group)]
Length=1706

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 0/42 (0%)
 Frame = +1

Query  190  HRTTALLLQPCYPQNSYHFPPKGVLRTKYSSPKENRIETEMG  315
            HR T L  + C    +YH   K  +RT      ++RIE  +G
Sbjct  425  HRNTQLFQKVCRVLKAYHLSAKESIRTAGVMSPDSRIEEALG  466


>gi|57900437|dbj|BAD87730.1|  putative THO complex 2 [Oryza sativa (japonica cultivar-group)]
Length=1843

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 0/42 (0%)
 Frame = +1

Query  190  HRTTALLLQPCYPQNSYHFPPKGVLRTKYSSPKENRIETEMG  315
            HR T L  + C    +YH   K  +RT      ++RIE  +G
Sbjct  484  HRNTQLFQKVCRVLKAYHLSAKESIRTAGVMSPDSRIEEALG  525

Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.315 0.134 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 232 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 363 Length of database: 101054579 Length adjustment: 88 Effective length of query: 275 Effective length of database: 76119867 Effective search space: 2511955611 Effective search space used: 2511955611 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)

Distribution of 4 Blast Hits on the Query Sequence