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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168927462-5510-213926963307.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig43
Length=499

Distribution of 41 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|1173256|sp|P46299|RS4_GOSHI  40S ribosomal protein S4 >gi|4...   291    1e-78
gi|92892080|gb|ABE91098.1|  40S ribosomal S4 protein [Medicago tr   283    2e-76
gi|22138108|gb|AAM93434.1|  40S ribosomal S4 protein [Glycine max   283    2e-76 UniGene infoGene info
gi|18398393|ref|NP_565414.1|  structural constituent of riboso...   278    5e-75 UniGene infoGene info
gi|15237195|ref|NP_200650.1|  structural constituent of riboso...   278    5e-75 UniGene infoGene info
gi|18415395|ref|NP_568179.1|  structural constituent of riboso...   278    5e-75 UniGene infoGene info
gi|73759787|dbj|BAE20168.1|  ribosomal protein S4 [Panax ginseng]   277    1e-74
gi|44894458|gb|AAS48726.1|  ribosomal protein S4 [Zea mays]         277    2e-74 UniGene info
gi|17979233|gb|AAL49933.1|  AT5g58420/mqj2_10 [Arabidopsis tha...   277    2e-74 UniGene info
gi|82400118|gb|ABB72798.1|  40S ribosomal protein S4-like protein   277    2e-74
gi|3914899|sp|O22424|RS4_MAIZE  40S ribosomal protein S4 >gi|2...   277    2e-74
gi|1173257|sp|P46300|RS4_SOLTU  40S ribosomal protein S4 >gi|4...   277    2e-74
gi|9759565|dbj|BAB11167.1|  40S ribosomal protein S4 [Arabidopsis   276    2e-74
gi|2345154|gb|AAB67831.1|  ribsomal protein S4 [Zea mays]           272    5e-73 UniGene info
gi|115436514|ref|NP_001043015.1|  Os01g0358400 [Oryza sativa (...   272    5e-73 Gene info
gi|115443689|ref|NP_001045624.1|  Os02g0105900 [Oryza sativa (...   272    5e-73 Gene info
gi|2463335|emb|CAA75242.1|  ribosomal protein S4 [Oryza sativa (j   270    3e-72 UniGene info
gi|115463485|ref|NP_001055342.1|  Os05g0368300 [Oryza sativa (...   268    1e-71 Gene info
gi|48596901|dbj|BAD22763.1|  ribosomal protein [Bromus inermis]     266    4e-71
gi|60418888|gb|AAX19871.1|  putative ribosomal protein S4 [Doryan   249    3e-66
gi|17367482|sp|O81363|RS4_PRUAR  40S ribosomal protein S4 >gi|...   249    5e-66
gi|6598334|gb|AAB86513.2|  putative ribosomal protein S4 [Arabido   239    3e-63
gi|79327186|ref|NP_001031846.1|  structural constituent of riboso   239    3e-63 UniGene infoGene info
gi|10177019|dbj|BAB10257.1|  ribosomal protein S4 [Arabidopsis th   239    3e-63
gi|47777385|gb|AAT38019.1|  putative 40S ribosomal protein S4 ...   231    1e-60 Gene info
gi|457682|dbj|BAA04961.1|  SS620 [Oryza sativa]                     155    7e-38 UniGene info
gi|116055779|emb|CAL57864.1|  40S ribosomal protein S4 (ISS) [Ost   137    3e-32
gi|21672060|gb|AAM74422.1|AC123594_5  Hypothetical protein [Or...  33.1    0.52  Gene info
gi|4416217|gb|AAD20264.1|  ATP synthase subunit 6 [Solanum tubero  31.2    2.0  
gi|4416214|gb|AAD20262.1|  ATP synthase subunit 6 [Solanum tubero  31.2    2.0  
gi|15236899|ref|NP_192809.1|  unknown protein [Arabidopsis tha...  30.8    2.6   UniGene infoGene info
gi|4539352|emb|CAB37500.1|  putative protein [Arabidopsis thal...  29.6    5.8  
gi|30680240|ref|NP_850531.1|  unknown protein [Arabidopsis tha...  29.6    5.8   UniGene infoGene info
gi|18397921|ref|NP_566304.1|  ubiquitin-protein ligase [Arabid...  29.6    5.8   UniGene infoGene info
gi|30691971|ref|NP_195557.2|  unknown protein [Arabidopsis tha...  29.6    5.8   UniGene infoGene info
gi|4467132|emb|CAB37501.1|  putative protein [Arabidopsis thalian  29.6    5.8  
gi|2924325|emb|CAB07784.1|  hypothetical protein [Malus x domesti  29.6    5.8   UniGene info
gi|115458688|ref|NP_001052944.1|  Os04g0451000 [Oryza sativa (...  29.3    7.5   Gene info
gi|77551522|gb|ABA94319.1|  Leucine Rich Repeat family protein...  29.3    7.5  
gi|15222414|ref|NP_174448.1|  copper ion binding [Arabidopsis ...  29.3    7.5   UniGene infoGene info
gi|15226583|ref|NP_179165.1|  unknown protein [Arabidopsis tha...  28.9    9.8   UniGene infoGene info
Alignments

>gi|1173256|sp|P46299|RS4_GOSHI  40S ribosomal protein S4
 gi|488739|emb|CAA55882.1| UniGene info ribosomal protein, small subunit 4e (RS4e) [Gossypium hirsutum]
Length=262

 Score =  291 bits (744),  Expect = 1e-78
 Identities = 141/143 (98%), Positives = 142/143 (99%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRF LHAITGDETK
Sbjct  61   VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSVQFGQKGIPYLNTYD  143


>gi|92892080|gb|ABE91098.1|  40S ribosomal S4 protein [Medicago truncatula]
Length=265

 Score =  283 bits (725),  Expect = 2e-76
 Identities = 136/143 (95%), Positives = 140/143 (97%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VIAILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH++  DE K
Sbjct  61   VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSVQFGQKGIPYLNTYD  143


>gi|22138108|gb|AAM93434.1| UniGene infoGene info 40S ribosomal S4 protein [Glycine max]
Length=264

 Score =  283 bits (725),  Expect = 2e-76
 Identities = 136/143 (95%), Positives = 140/143 (97%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VIAILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH++  DE K
Sbjct  61   VIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSVQFGQKGIPYLNTYD  143


>gi|18398393|ref|NP_565414.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|75163156|sp|Q93VH9|RS41_ARATH Gene info 40S ribosomal protein S4-1
 gi|13877537|gb|AAK43846.1|AF370469_1 UniGene infoGene info Unknown protein [Arabidopsis thaliana]
 gi|14334916|gb|AAK59636.1| UniGene infoGene info putative ribosomal protein S4 [Arabidopsis thaliana]
 gi|17104537|gb|AAL34157.1| UniGene infoGene info putative ribosomal protein S4 [Arabidopsis thaliana]
 gi|17978689|gb|AAL47338.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|21536498|gb|AAM60830.1| UniGene infoGene info putative ribosomal protein S4 [Arabidopsis thaliana]
Length=261

 Score =  278 bits (712),  Expect = 5e-75
 Identities = 131/143 (91%), Positives = 139/143 (97%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E K
Sbjct  61   VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRS+QFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSIQFGQKGIPYLNTYD  143


>gi|15237195|ref|NP_200650.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|115311859|sp|Q8VYK6|RS43_ARATH Gene info 40S ribosomal protein S4-3
 gi|16226259|gb|AAL16117.1|AF428285_1 UniGene infoGene info AT5g58420/mqj2_10 [Arabidopsis thaliana]
 gi|21592333|gb|AAM64284.1| UniGene infoGene info ribosomal protein S4-like [Arabidopsis thaliana]
Length=262

 Score =  278 bits (712),  Expect = 5e-75
 Identities = 131/143 (91%), Positives = 139/143 (97%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E K
Sbjct  61   VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRS+QFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSIQFGQKGIPYLNTYD  143


>gi|18415395|ref|NP_568179.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|20143904|sp|P49204|RS42_ARATH Gene info 40S ribosomal protein S4-2
 gi|7546687|emb|CAB87265.1| Gene info ribosomal protein S4 [Arabidopsis thaliana]
 gi|15292999|gb|AAK93610.1| UniGene infoGene info putative 40S ribosomal protein S4 [Arabidopsis thaliana]
 gi|17979543|gb|AAL50106.1| UniGene infoGene info AT5g07090/T28J14_30 [Arabidopsis thaliana]
 gi|19310835|gb|AAL85148.1| UniGene infoGene info putative 40S ribosomal protein S4 [Arabidopsis thaliana]
 gi|20147251|gb|AAM10339.1| UniGene infoGene info AT5g07090/T28J14_30 [Arabidopsis thaliana]
 gi|21537414|gb|AAM61755.1| UniGene infoGene info 40S ribosomal protein S4 [Arabidopsis thaliana]
Length=262

 Score =  278 bits (712),  Expect = 5e-75
 Identities = 131/143 (91%), Positives = 139/143 (97%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E K
Sbjct  61   VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRS+QFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSIQFGQKGIPYLNTYD  143


>gi|73759787|dbj|BAE20168.1|  ribosomal protein S4 [Panax ginseng]
Length=264

 Score =  277 bits (709),  Expect = 1e-74
 Identities = 132/143 (92%), Positives = 139/143 (97%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            V +ILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH++  +E K
Sbjct  61   VQSILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIPY+NTYD
Sbjct  121  FKLCKVRSVQFGQKGIPYINTYD  143


>gi|44894458|gb|AAS48726.1| UniGene info ribosomal protein S4 [Zea mays]
Length=265

 Score =  277 bits (708),  Expect = 2e-74
 Identities = 131/143 (91%), Positives = 139/143 (97%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQRHV+VDGKVRTDKTYPAGFMDV+SIPKTNE++RLLYDTKGRFRLH I  ++ K
Sbjct  61   VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSVQFGQKGIPYLNTYD  143


>gi|17979233|gb|AAL49933.1| UniGene info AT5g58420/mqj2_10 [Arabidopsis thaliana]
 gi|23505827|gb|AAN28773.1| UniGene info At5g58420/mqj2_10 [Arabidopsis thaliana]
Length=262

 Score =  277 bits (708),  Expect = 2e-74
 Identities = 130/143 (90%), Positives = 139/143 (97%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRL+YALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLEYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E K
Sbjct  61   VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRS+QFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSIQFGQKGIPYLNTYD  143


>gi|82400118|gb|ABB72798.1|  40S ribosomal protein S4-like protein [Solanum tuberosum]
Length=264

 Score =  277 bits (708),  Expect = 2e-74
 Identities = 131/143 (91%), Positives = 140/143 (97%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQR VMVDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH++  +E+K
Sbjct  61   VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSVQFGQKGIPYLNTYD  143


>gi|3914899|sp|O22424|RS4_MAIZE  40S ribosomal protein S4
 gi|2331301|gb|AAB66899.1| UniGene info ribosomal protein S4 type I [Zea mays]
Length=265

 Score =  277 bits (708),  Expect = 2e-74
 Identities = 131/143 (91%), Positives = 139/143 (97%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQRHV+VDGKVRTDKTYPAGFMDV+SIPKTNE++RLLYDTKGRFRLH I  ++ K
Sbjct  61   VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSVQFGQKGIPYLNTYD  143


>gi|1173257|sp|P46300|RS4_SOLTU  40S ribosomal protein S4
 gi|457803|emb|CAA54095.1| UniGene info ribosomal protein S4 [Solanum tuberosum]
Length=264

 Score =  277 bits (708),  Expect = 2e-74
 Identities = 131/143 (91%), Positives = 140/143 (97%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQR VMVDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH++  +E+K
Sbjct  61   VISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSVQFGQKGIPYLNTYD  143


>gi|9759565|dbj|BAB11167.1|  40S ribosomal protein S4 [Arabidopsis thaliana]
Length=263

 Score =  276 bits (707),  Expect = 2e-74
 Identities = 130/142 (91%), Positives = 138/142 (97%), Gaps = 0/142 (0%)
 Frame = -1

Query  427  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV  248
            ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct  3    ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV  62

Query  247  IAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKF  68
            I+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KF
Sbjct  63   ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF  122

Query  67   KLCKVRSVQFGQKGIPYLNTYD  2
            KLCKVRS+QFGQKGIPYLNTYD
Sbjct  123  KLCKVRSIQFGQKGIPYLNTYD  144


>gi|2345154|gb|AAB67831.1| UniGene info ribsomal protein S4 [Zea mays]
Length=265

 Score =  272 bits (695),  Expect = 5e-73
 Identities = 129/143 (90%), Positives = 137/143 (95%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYAL YRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALNYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQRHV+VDGKVRTDKTYPAGFMDV+SIPKT E++RLLYDTKGRFRLH I  ++ K
Sbjct  61   VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTMENYRLLYDTKGRFRLHPIRDEDAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSVQFGQKGIPYLNTYD  143


>gi|115436514|ref|NP_001043015.1| Gene info Os01g0358400 [Oryza sativa (japonica cultivar-group)]
 gi|53791616|dbj|BAD52963.1| Gene info putative 40S ribosomal protein S4 [Oryza sativa (japonica cultivar-group)]
 gi|113532546|dbj|BAF04929.1| Gene info Os01g0358400 [Oryza sativa (japonica cultivar-group)]
Length=265

 Score =  272 bits (695),  Expect = 5e-73
 Identities = 128/143 (89%), Positives = 138/143 (96%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQRHV+VDGKVRTDKTYPAGFMDV+SIPKT E++RLLYDTKGRFRL ++  ++ K
Sbjct  61   VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSVQFGQKGIPYLNTYD  143


>gi|115443689|ref|NP_001045624.1| Gene info Os02g0105900 [Oryza sativa (japonica cultivar-group)]
 gi|109940160|sp|P49398|RS4_ORYSA  40S ribosomal protein S4 (SCAR protein SS620)
 gi|50252099|dbj|BAD28085.1| Gene info putative ribosomal protein S4 [Oryza sativa (japonica cultivar-group)]
 gi|113535155|dbj|BAF07538.1| Gene info Os02g0105900 [Oryza sativa (japonica cultivar-group)]
Length=265

 Score =  272 bits (695),  Expect = 5e-73
 Identities = 128/143 (89%), Positives = 138/143 (96%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQRHV+VDGKVRTDKTYPAGFMDV+SIPKT E++RLLYDTKGRFRL ++  ++ K
Sbjct  61   VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIPYLNTYD
Sbjct  121  FKLCKVRSVQFGQKGIPYLNTYD  143


>gi|2463335|emb|CAA75242.1| UniGene info ribosomal protein S4 [Oryza sativa (japonica cultivar-group)]
Length=268

 Score =  270 bits (689),  Expect = 3e-72
 Identities = 127/142 (89%), Positives = 137/142 (96%), Gaps = 0/142 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQRHV+VDGKVRTDKTYPAGFMDV+SIPKT E++RLLYDTKGRFRL ++  ++ K
Sbjct  61   VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTY  5
            FKLCKVRSVQFGQKGIPYLNTY
Sbjct  121  FKLCKVRSVQFGQKGIPYLNTY  142


>gi|115463485|ref|NP_001055342.1| Gene info Os05g0368300 [Oryza sativa (japonica cultivar-group)]
 gi|113578893|dbj|BAF17256.1| Gene info Os05g0368300 [Oryza sativa (japonica cultivar-group)]
Length=263

 Score =  268 bits (684),  Expect = 1e-71
 Identities = 129/143 (90%), Positives = 136/143 (95%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHK+RECLPLILILRNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VI+ILMQRHVMVDGKVRTDKTYPAGFMDVVSI KT E+FRLLYDTKGRFRLH+I  ++ K
Sbjct  61   VISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIP+LNT D
Sbjct  121  FKLCKVRSVQFGQKGIPFLNTND  143


>gi|48596901|dbj|BAD22763.1|  ribosomal protein [Bromus inermis]
Length=265

 Score =  266 bits (679),  Expect = 4e-71
 Identities = 124/143 (86%), Positives = 136/143 (95%), Gaps = 0/143 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAP HWMLDKLGGAFAPKPSSGPHK+RECLPLILILRNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            V +ILMQRH+MVDGKVRTDKTYPAGFMD++SIPKT E++RLLYDTKGRFRLH++  ++ K
Sbjct  61   VQSILMQRHIMVDGKVRTDKTYPAGFMDIISIPKTGENYRLLYDTKGRFRLHSVRDEDAK  120

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            +KLCKVRSVQFGQKGIPYLNT D
Sbjct  121  YKLCKVRSVQFGQKGIPYLNTND  143


>gi|60418888|gb|AAX19871.1|  putative ribosomal protein S4 [Doryanthes excelsa]
Length=131

 Score =  249 bits (637),  Expect = 3e-66
 Identities = 120/131 (91%), Positives = 127/131 (96%), Gaps = 0/131 (0%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWML+KLGGAFAPKPSSGPHK+RECLPLILILRN+LKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLNKLGGAFAPKPSSGPHKARECLPLILILRNKLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            VIAILMQRHVMVD KVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E K
Sbjct  61   VIAILMQRHVMVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK  120

Query  70   FKLCKVRSVQF  38
            FKLCKVR+VQF
Sbjct  121  FKLCKVRNVQF  131


>gi|17367482|sp|O81363|RS4_PRUAR  40S ribosomal protein S4
 gi|3264763|gb|AAC24585.1|  40S ribosomal protein S4 [Prunus armeniaca]
Length=261

 Score =  249 bits (635),  Expect = 5e-66
 Identities = 120/143 (83%), Positives = 131/143 (91%), Gaps = 4/143 (2%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  251
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE
Sbjct  1    MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYRE  60

Query  250  VIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETK  71
            V++ILMQRH++VDGK+     +     DVVSIPKTNE+FRLLYDTKGRFRLH+I  +E+K
Sbjct  61   VVSILMQRHILVDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK  116

Query  70   FKLCKVRSVQFGQKGIPYLNTYD  2
            FKLCKVRSVQFGQKGIPY+NTYD
Sbjct  117  FKLCKVRSVQFGQKGIPYINTYD  139


>gi|6598334|gb|AAB86513.2|  putative ribosomal protein S4 [Arabidopsis thaliana]
Length=243

 Score =  239 bits (611),  Expect = 3e-63
 Identities = 113/125 (90%), Positives = 121/125 (96%), Gaps = 0/125 (0%)
 Frame = -1

Query  376  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRT  197
            MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VDGKVRT
Sbjct  1    MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT  60

Query  196  DKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSVQFGQKGIPY  17
            DKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KFKLCKVRS+QFGQKGIPY
Sbjct  61   DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY  120

Query  16   LNTYD  2
            LNTYD
Sbjct  121  LNTYD  125


>gi|79327186|ref|NP_001031846.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
Length=244

 Score =  239 bits (611),  Expect = 3e-63
 Identities = 113/125 (90%), Positives = 121/125 (96%), Gaps = 0/125 (0%)
 Frame = -1

Query  376  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRT  197
            MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VDGKVRT
Sbjct  1    MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT  60

Query  196  DKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSVQFGQKGIPY  17
            DKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KFKLCKVRS+QFGQKGIPY
Sbjct  61   DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY  120

Query  16   LNTYD  2
            LNTYD
Sbjct  121  LNTYD  125


>gi|10177019|dbj|BAB10257.1|  ribosomal protein S4 [Arabidopsis thaliana]
Length=244

 Score =  239 bits (611),  Expect = 3e-63
 Identities = 113/125 (90%), Positives = 121/125 (96%), Gaps = 0/125 (0%)
 Frame = -1

Query  376  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRT  197
            MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VDGKVRT
Sbjct  1    MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT  60

Query  196  DKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSVQFGQKGIPY  17
            DKTYPAGFMDVVSIPKTNE+FRLLYDTKGRFRLH+I  +E KFKLCKVRS+QFGQKGIPY
Sbjct  61   DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY  120

Query  16   LNTYD  2
            LNTYD
Sbjct  121  LNTYD  125


>gi|47777385|gb|AAT38019.1| Gene info putative 40S ribosomal protein S4 [Oryza sativa (japonica cultivar-group)]
Length=245

 Score =  231 bits (588),  Expect = 1e-60
 Identities = 112/125 (89%), Positives = 119/125 (95%), Gaps = 0/125 (0%)
 Frame = -1

Query  376  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRT  197
            MLDKLGGAFAPKPSSGPHK+RECLPLILILRNRLKYALTYREVI+ILMQRHVMVDGKVRT
Sbjct  1    MLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVMVDGKVRT  60

Query  196  DKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLHAITGDETKFKLCKVRSVQFGQKGIPY  17
            DKTYPAGFMDVVSI KT E+FRLLYDTKGRFRLH+I  ++ KFKLCKVRSVQFGQKGIP+
Sbjct  61   DKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPF  120

Query  16   LNTYD  2
            LNT D
Sbjct  121  LNTND  125


>gi|457682|dbj|BAA04961.1| UniGene info SS620 [Oryza sativa]
Length=90

 Score =  155 bits (392),  Expect = 7e-38
 Identities = 73/88 (82%), Positives = 82/88 (93%), Gaps = 0/88 (0%)
 Frame = -1

Query  274  KYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFRLH  95
            KYALTYREVI+ILMQRHV+VDGKVRTDKTYPAGFMDV+SIPKT E++RLLYDTKGRFRL 
Sbjct  1    KYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQ  60

Query  94   AITGDETKFKLCKVRSVQFGQKGIPYLN  11
            ++  ++ KFKLCKVRSVQFGQKGI YLN
Sbjct  61   SVKDEDAKFKLCKVRSVQFGQKGIRYLN  88


>gi|116055779|emb|CAL57864.1|  40S ribosomal protein S4 (ISS) [Ostreococcus tauri]
Length=133

 Score =  137 bits (344),  Expect = 3e-32
 Identities = 69/95 (72%), Positives = 72/95 (75%), Gaps = 12/95 (12%)
 Frame = -1

Query  430  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPS------------SGPHKSRECLPLILIL  287
            MARG KKHLKRLNAPKHWMLDKLGG FAPKPS             GPHK RECLPL LIL
Sbjct  36   MARGPKKHLKRLNAPKHWMLDKLGGVFAPKPSPGACARPSKGPCEGPHKQRECLPLCLIL  95

Query  286  RNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYP  182
            RNRLKYALTY+EV  ILMQR V VDGK+R DK +P
Sbjct  96   RNRLKYALTYKEVTTILMQRCVKVDGKIRMDKCFP  130


>gi|21672060|gb|AAM74422.1|AC123594_5 Gene info Hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|22748359|gb|AAN05361.1| Gene info Hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|31431409|gb|AAP53190.1| Gene info Transposable element protein, putative, Retrotrans_gag [Oryza 
sativa (japonica cultivar-group)]
Length=350

 Score = 33.1 bits (74),  Expect = 0.52
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 0/35 (0%)
 Frame = +2

Query  197  CPNLSIYHNMPLHKDSNDFSICESILQSVSQNEDQ  301
            CP + I H  PLH +S   S  ES  QS+   E++
Sbjct  216  CPEIEIIHEYPLHVESEPDSTVESSFQSLEPEEEE  250


>gi|4416217|gb|AAD20264.1|  ATP synthase subunit 6 [Solanum tuberosum]
Length=388

 Score = 31.2 bits (69),  Expect = 2.0
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +2

Query  179  SRIGLICPNLSIYHNMP----LHKDSNDFSICESILQSVSQNEDQGQAFSGLV  325
            +++G + PN S    +     LH +SND    +S+L+ ++QN   G+A+   V
Sbjct  63   AKLGELMPNKSAQEVLEAAEVLHGESNDIDFLDSLLKDLNQNGVAGEAYKDAV  115


>gi|4416214|gb|AAD20262.1|  ATP synthase subunit 6 [Solanum tuberosum]
Length=388

 Score = 31.2 bits (69),  Expect = 2.0
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = +2

Query  179  SRIGLICPNLSIYHNMP----LHKDSNDFSICESILQSVSQNEDQGQAFSGLV  325
            +++G + PN S    +     LH +SND    +S+L+ ++QN   G+A+   V
Sbjct  63   AKLGELMPNKSAQEVLEAAEVLHGESNDIDFLDSLLKDLNQNGVAGEAYKDAV  115


>gi|15236899|ref|NP_192809.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|75220257|sp|O82491|SPT16_ARATH Gene info FACT complex subunit SPT16 (Facilitates chromatin transcription 
complex subunit SPT16)
 gi|3600033|gb|AAC35521.1| Gene info contains similarity to the N terminal domain of the E1 protein 
(Pfam: E1_N.hmm, score: 12.36) [Arabidopsis thaliana]
 gi|7267769|emb|CAB81172.1| Gene info putative transcriptional regulator [Arabidopsis thaliana]
Length=1074

 Score = 30.8 bits (68),  Expect = 2.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 0/32 (0%)
 Frame = +3

Query  306  KHSLDLWGPDDGLGAKAPPSLSSIQCLGALSL  401
            KHS DLWG  D L    PP+   ++ L + +L
Sbjct  44   KHSADLWGSADALAIATPPASDDLRYLKSSAL  75


>gi|4539352|emb|CAB37500.1|  putative protein [Arabidopsis thaliana]
 gi|7270828|emb|CAB80509.1|  putative protein [Arabidopsis thaliana]
Length=1468

 Score = 29.6 bits (65),  Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 0/33 (0%)
 Frame = -1

Query  403   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECL  305
             +R+  P HW L  +    + K S+GP +S E L
Sbjct  1143  QRMPLPPHWFLSAISAVHSGKTSTGPPESTELL  1175


>gi|30680240|ref|NP_850531.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|79313153|ref|NP_001030656.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
Length=325

 Score = 29.6 bits (65),  Expect = 5.8
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
 Frame = +2

Query  14   EVWNSFLAKLDGSNL-----AKLKLGFVTSDSMETETPFGVI--K*TEVLICFRNGNNIH  172
            E++NS L K+  SNL     A  +L  +T    E    FG    + T ++    +G+N  
Sbjct  34   EIFNSLLCKVSSSNLQDQKSAAKELRLLTRKGTEFRALFGESPDEITRLVNPLLHGSNPD  93

Query  173  ETSRIGLICPNLSIYHNMPLHKDSNDFSICES  268
            E  +  ++   L    N+ +H DSN   +CE+
Sbjct  94   EKLQEDVVTTLL----NISIHDDSNKKLVCEN  121


>gi|18397921|ref|NP_566304.1| UniGene infoGene info ubiquitin-protein ligase [Arabidopsis thaliana]
 gi|6041837|gb|AAF02146.1|AC009853_6 Gene info hypothetical protein [Arabidopsis thaliana]
 gi|19715649|gb|AAL91644.1| UniGene infoGene info AT3g07360/F21O3_7 [Arabidopsis thaliana]
Length=460

 Score = 29.6 bits (65),  Expect = 5.8
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
 Frame = +2

Query  14   EVWNSFLAKLDGSNL-----AKLKLGFVTSDSMETETPFGVI--K*TEVLICFRNGNNIH  172
            E++NS L K+  SNL     A  +L  +T    E    FG    + T ++    +G+N  
Sbjct  169  EIFNSLLCKVSSSNLQDQKSAAKELRLLTRKGTEFRALFGESPDEITRLVNPLLHGSNPD  228

Query  173  ETSRIGLICPNLSIYHNMPLHKDSNDFSICES  268
            E  +  ++   L    N+ +H DSN   +CE+
Sbjct  229  EKLQEDVVTTLL----NISIHDDSNKKLVCEN  256


>gi|30691971|ref|NP_195557.2| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|26449867|dbj|BAC42056.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|28973069|gb|AAO63859.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
Length=1465

 Score = 29.6 bits (65),  Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 0/33 (0%)
 Frame = -1

Query  403   KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECL  305
             +R+  P HW L  +    + K S+GP +S E L
Sbjct  1140  QRMPLPPHWFLSAISAVHSGKTSTGPPESTELL  1172


>gi|4467132|emb|CAB37501.1|  putative protein [Arabidopsis thaliana]
Length=1179

 Score = 29.6 bits (65),  Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 0/33 (0%)
 Frame = -1

Query  403  KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECL  305
            +R+  P HW L  +    + K S+GP +S E L
Sbjct  843  QRMPLPPHWFLSAISAVHSGKTSTGPPESTELL  875


>gi|2924325|emb|CAB07784.1| UniGene info hypothetical protein [Malus x domestica]
Length=446

 Score = 29.6 bits (65),  Expect = 5.8
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +3

Query  237  RIAMTSLYVR--AYFNLFRRMRIKGKHSLDLWGPDDGLGAKAPPSLSSIQCLGALSLFKC  410
            RI +  LY +  +    F      G H+ + W  DD +   AP  LS+   L  + L  C
Sbjct  231  RIGVIPLYAKDESEMRWFEVPGFNGVHATNAWDEDDAIVMVAPNVLSAEHVLERVDLVHC  290

Query  411  FFNPLAILLK  440
                + I LK
Sbjct  291  LVEKVRIDLK  300


>gi|115458688|ref|NP_001052944.1| Gene info Os04g0451000 [Oryza sativa (japonica cultivar-group)]
 gi|113564515|dbj|BAF14858.1| Gene info Os04g0451000 [Oryza sativa (japonica cultivar-group)]
Length=320

 Score = 29.3 bits (64),  Expect = 7.5
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query  45   TDRTLQSLNLVSSPVIAWR--RKRPLVS*SRRKSSFVLGMETTSMKPAG*VLSVLTFPST  218
            TDR+  +  L SSP IA R  ++R L+S S   ++  L +  ++  P     +     S 
Sbjct  157  TDRSSSAFRLFSSPCIAVRSSQRRALISSSPPPNTRSLTLLCSTAPPRRLTTAAAAEASR  216

Query  219  ITCLCIRIAMTSL  257
            +   C R+ ++SL
Sbjct  217  LALACCRVVISSL  229


>gi|77551522|gb|ABA94319.1|  Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica 
cultivar-group)]
Length=1133

 Score = 29.3 bits (64),  Expect = 7.5
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 0/25 (0%)
 Frame = +3

Query  333  DDGLGAKAPPSLSSIQCLGALSLFK  407
            ++ L  + P SL+ +Q LGALSLFK
Sbjct  182  ENALSGEIPRSLADLQSLGALSLFK  206


>gi|15222414|ref|NP_174448.1| UniGene infoGene info copper ion binding [Arabidopsis thaliana]
 gi|12597844|gb|AAG60154.1|AC074360_19 Gene info copper amine oxidase, putative [Arabidopsis thaliana]
Length=741

 Score = 29.3 bits (64),  Expect = 7.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 0/24 (0%)
 Frame = +3

Query  327  GPDDGLGAKAPPSLSSIQCLGALS  398
            GP  G+G K PP  SS+  +G+LS
Sbjct  78   GPSQGIGHKDPPVFSSVFVIGSLS  101


>gi|15226583|ref|NP_179165.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|4335729|gb|AAD17407.1| Gene info putative salt-inducible protein [Arabidopsis thaliana]
Length=627

 Score = 28.9 bits (63),  Expect = 9.8
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 0/36 (0%)
 Frame = -2

Query  123  MTPKGVSVSMLSLVTKPSLSFARFDPSSLARKEFHT  16
            +TP  VS ++LSLV  P+L+F   +   L R +F T
Sbjct  69   LTPSLVSTTLLSLVKTPNLAFNFVNHIDLYRLDFQT  104







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 333
Number of extensions: 14
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 499
Length of database: 101054579
Length adjustment: 105
Effective length of query: 394
Effective length of database: 71302934
Effective search space: 4349478974
Effective search space used: 4349478974
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)