Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927478-16663-194785385360.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig44 Length=521
Score E Sequences producing significant alignments: (Bits) Value gi|62867586|emb|CAI84658.1| hypothetical protein [Nicotiana taba 144 5e-36 gi|15451184|gb|AAK96863.1| putative protein [Arabidopsis thalian 92.0 1e-18 gi|15235487|ref|NP_194620.1| unknown protein [Arabidopsis tha... 90.9 2e-18 gi|115465393|ref|NP_001056296.1| Os05g0558800 [Oryza sativa (... 64.7 2e-10 gi|115480475|ref|NP_001063831.1| Os09g0544400 [Oryza sativa (... 36.6 0.052 gi|32490475|dbj|BAC79158.1| putative protein kinase [Oryza sa... 36.6 0.052 gi|6714471|gb|AAF26157.1|AC008261_14 unknown protein [Arabidopsi 35.8 0.089 gi|18395730|ref|NP_566134.1| unknown protein [Arabidopsis thalia 35.8 0.089 gi|60498647|dbj|BAD90707.1| plastid envelope DNA binding protein 35.0 0.15 gi|2213538|emb|CAA67292.1| DNA-binding protein PD2 [Pisum sativu 35.0 0.15 gi|92871577|gb|ABE80522.1| RNA polymerase Rpb1, domain 5 [Medica 32.7 0.76 gi|15230916|ref|NP_188601.1| unknown protein [Arabidopsis thalia 32.7 0.76 gi|9294433|dbj|BAB02553.1| formin binding protein-like [Arabidop 32.7 0.76 gi|115455015|ref|NP_001051108.1| Os03g0722100 [Oryza sativa (... 32.0 1.3 gi|108710802|gb|ABF98597.1| Myb-like DNA-binding domain conta... 32.0 1.3 gi|62733579|gb|AAX95696.1| Myb-like DNA-binding domain, putat... 32.0 1.3 gi|21537016|gb|AAM61357.1| unknown [Arabidopsis thaliana] 31.2 2.2 gi|115448971|ref|NP_001048265.1| Os02g0772500 [Oryza sativa (... 31.2 2.2 gi|110742410|dbj|BAE99126.1| hypothetical protein [Arabidopsis t 30.8 2.9 gi|110741185|dbj|BAF02143.1| hypothetical protein [Arabidopsis t 30.8 2.9 gi|20259341|gb|AAM13995.1| unknown protein [Arabidopsis thaliana 30.8 2.9 gi|15230963|ref|NP_191370.1| unknown protein [Arabidopsis tha... 30.8 2.9 gi|4314355|gb|AAD15566.1| unknown protein [Arabidopsis thaliana] 30.8 2.9 gi|30679158|ref|NP_567238.2| ATP binding / ATPase/ nucleoside... 30.8 2.9 gi|18400020|ref|NP_565539.1| catalytic [Arabidopsis thaliana]... 30.8 2.9 gi|121720672|ref|YP_001001592.1| hypothetical chloroplast RF1... 30.4 3.8 gi|15238906|ref|NP_196656.1| unknown protein [Arabidopsis tha... 30.4 3.8 gi|77553260|gb|ABA96056.1| hypothetical protein LOC_Os12g0907... 30.4 3.8 gi|92878426|gb|ABE85038.1| Peptidase S1 and S6, chymotrypsin/... 30.0 4.9 gi|15144508|gb|AAK84475.1| unknown [Lycopersicon esculentum] 30.0 4.9 gi|15617438|dbj|BAB64937.1| TdcA1-ORF1-ORF2 [Daucus carota] 30.0 4.9 gi|115451341|ref|NP_001049271.1| Os03g0197300 [Oryza sativa (... 29.6 6.4 gi|108706671|gb|ABF94466.1| Cupin family protein, expressed [... 29.6 6.4 gi|42570875|ref|NP_973511.1| catalytic [Arabidopsis thaliana] 29.6 6.4 gi|115447101|ref|NP_001047330.1| Os02g0598200 [Oryza sativa (... 29.6 6.4 gi|42408968|dbj|BAD10224.1| transducin / WD-40 repeat protein... 29.6 6.4 gi|115477735|ref|NP_001062463.1| Os08g0554000 [Oryza sativa (... 29.6 6.4 gi|117166017|dbj|BAF36319.1| hypothetical protein [Ipomoea trifi 29.3 8.4 gi|92892059|gb|ABE91077.1| Zinc finger, TAZ-type; Zinc finger... 29.3 8.4 gi|45935130|gb|AAS79588.1| hypothetical protein [Ipomoea trifida 29.3 8.4 gi|4733988|gb|AAD28668.1| putative chromodomain-helicase-DNA-... 29.3 8.4 gi|115486111|ref|NP_001068199.1| Os11g0593100 [Oryza sativa (... 29.3 8.4 gi|42569009|ref|NP_178970.2| ATP binding / ATP-dependent heli... 29.3 8.4
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 282 Number of extensions: 8 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 521 Length of database: 101054579 Length adjustment: 105 Effective length of query: 416 Effective length of database: 71302934 Effective search space: 4848599512 Effective search space used: 4848599512 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)