Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927515-7599-75771584937.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig46 Length=186
Score E Sequences producing significant alignments: (Bits) Value gi|115454491|ref|NP_001050846.1| Os03g0666500 [Oryza sativa (... 117 9e-27 gi|12311684|emb|CAC24477.1| GTP binding protein [Cichorium intyb 117 1e-26 gi|12311680|emb|CAC24475.1| GTP binding protein [Cichorium intyb 117 1e-26 gi|12311682|emb|CAC24476.1| GTP binding protein [Cichorium intyb 117 1e-26 gi|1370178|emb|CAA98166.1| RAB5A [Lotus japonicus] 117 1e-26 gi|547478|emb|CAA85733.1| guanine nucleotide regulatory prote... 117 1e-26 gi|15235113|ref|NP_193699.1| ARA7; GTP binding [Arabidopsis t... 117 2e-26 gi|15242309|ref|NP_199326.1| RHA1 [Arabidopsis thaliana] >gi|... 117 2e-26 gi|108863008|gb|ABA99930.2| Ras-related protein RHN1, putativ... 116 3e-26 gi|4741844|gb|AAD28731.1|AF112964_1 small GTP-binding protein [T 116 3e-26 gi|115489706|ref|NP_001067340.1| Os12g0631100 [Oryza sativa (... 116 3e-26 gi|6010031|emb|CAB57219.1| GTP binding protein [Cichorium intybu 115 4e-26 gi|296878|emb|CAA50609.1| ras-related GTP-binding protein [Nicot 115 5e-26 gi|12311678|emb|CAC24474.1| GTP binding protein [Cichorium intyb 114 8e-26 gi|6010033|emb|CAB57220.1| GTP binding protein [Cichorium intybu 114 8e-26 gi|13774086|gb|AAK38149.1| small GTP-binding protein [Oryza sati 114 8e-26 gi|12651646|gb|AAA18558.2| putative. similar to GTP-binding prot 114 8e-26 gi|400977|sp|P31583|RHN1_NICPL Ras-related protein RHN1 >gi|1... 112 3e-25 gi|12311688|emb|CAC24479.1| GTP binding protein [Cichorium in... 110 1e-24 gi|12311686|emb|CAC24478.1| GTP bindinf protein [Cichorium intyb 110 1e-24 gi|12311692|emb|CAC24481.1| GTP binding protein [Cichorium intyb 110 1e-24 gi|266879|sp|P29687|RAB5_TOBAC Ras-related protein Rab5 >gi|1... 110 2e-24 gi|28866038|emb|CAD26971.1| Rab-related small GTP-binding protei 107 1e-23 gi|116059284|emb|CAL54991.1| GTPase Rab11/YPT3, small G prote... 104 1e-22 gi|115450775|ref|NP_001048988.1| Os03g0151900 [Oryza sativa (... 80.1 2e-15 gi|115482198|ref|NP_001064692.1| Os10g0441800 [Oryza sativa (... 80.1 2e-15 gi|10880926|gb|AAG24438.1|AF304518_1 small GTP-binding protei... 80.1 2e-15 gi|4678309|emb|CAB41100.1| small GTP-binding protein-like (fr... 79.7 3e-15 gi|18410144|ref|NP_567008.1| ARA6; GTP binding [Arabidopsis t... 79.7 3e-15 gi|84626822|gb|ABC59814.1| small GTPase Rab5b [Nicotiana tabacum 79.3 4e-15 gi|3153154|emb|CAA06922.1| small GTP-binding protein [Mesembryan 79.3 4e-15 gi|1370180|emb|CAA98167.1| RAB5B [Lotus japonicus] 79.3 4e-15 gi|115469610|ref|NP_001058404.1| Os06g0687100 [Oryza sativa (... 65.5 6e-11 gi|92893896|gb|ABE91946.1| Ras GTPase [Medicago truncatula] 63.5 2e-10 gi|1405561|emb|CAA67153.1| FSGTP1 [Fagus sylvatica] 63.5 2e-10 gi|15217568|ref|NP_172434.1| ATRAB11C; GTP binding [Arabidops... 63.5 2e-10 gi|15242483|ref|NP_199387.1| GTP binding [Arabidopsis thalian... 63.2 3e-10 gi|452357|emb|CAA82708.1| guanine nucleotide regulatory prote... 63.2 3e-10 gi|303742|dbj|BAA02112.1| GTP-binding protein [Pisum sativum]... 63.2 3e-10 gi|1370156|emb|CAA98184.1| RAB11H [Lotus japonicus] 62.8 4e-10 gi|15222396|ref|NP_172221.1| GTP binding [Arabidopsis thaliana] 62.8 4e-10 gi|3024528|sp|Q39434|RB2BV_BETVU Ras-related protein Rab2BV >... 62.8 4e-10 gi|3024501|sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C >... 62.8 4e-10 gi|3024506|sp|Q40523|RB11A_TOBAC Ras-related protein Rab11A >... 62.8 4e-10 gi|51243763|gb|AAT99574.1| rab GTP-binding protein [Triticum aes 62.4 5e-10 gi|15219955|ref|NP_173136.1| RAB11; GTP binding [Arabidopsis ... 62.4 5e-10 gi|15234020|ref|NP_193615.1| GTP binding [Arabidopsis thalian... 62.4 5e-10 gi|115478587|ref|NP_001062887.1| Os09g0327100 [Oryza sativa (... 62.0 6e-10 gi|92885185|gb|ABE87705.1| Ras GTPase; Sigma-54 factor, inter... 62.0 6e-10 gi|488700|emb|CAA55865.1| Rab [Medicago sativa] 62.0 6e-10 gi|115441051|ref|NP_001044805.1| Os01g0848700 [Oryza sativa (... 62.0 6e-10 gi|22597170|gb|AAN03472.1| GTP-binding protein [Glycine max] 62.0 6e-10 gi|115456287|ref|NP_001051744.1| Os03g0823700 [Oryza sativa (... 62.0 6e-10 gi|48716902|dbj|BAD23597.1| putative GTP-binding protein [Ory... 62.0 6e-10 gi|303744|dbj|BAA02113.1| GTP-binding protein [Pisum sativum]... 62.0 6e-10 gi|115465467|ref|NP_001056333.1| Os05g0564400 [Oryza sativa (... 61.6 8e-10 gi|115439059|ref|NP_001043809.1| Os01g0667600 [Oryza sativa (... 61.6 8e-10 gi|3024502|sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D >... 61.6 8e-10 gi|15237828|ref|NP_200723.1| GTP binding [Arabidopsis thalian... 61.6 8e-10 gi|116057161|emb|CAL51588.1| GTP-binding protein SEC4, small ... 61.2 1e-09 gi|1279542|emb|CAA95859.1| small GTPase [Mangifera indica] 61.2 1e-09 gi|15239462|ref|NP_200894.1| GTP binding [Arabidopsis thalian... 61.2 1e-09 gi|91806311|gb|ABE65883.1| Ras-like GTP-binding protein [Arabido 60.8 1e-09 gi|115464897|ref|NP_001056048.1| Os05g0516800 [Oryza sativa (... 60.8 1e-09 gi|21555752|gb|AAM63927.1| guanine nucleotide regulatory prot... 60.8 1e-09 gi|115439941|ref|NP_001044250.1| Os01g0750000 [Oryza sativa (... 60.8 1e-09 gi|15224916|ref|NP_181989.1| RAB6; GTP binding [Arabidopsis t... 60.8 1e-09 gi|115472201|ref|NP_001059699.1| Os07g0496000 [Oryza sativa (... 60.8 1e-09 gi|3025293|sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6 >gi|8 60.8 1e-09 gi|21536533|gb|AAM60865.1| Rab-type small GTP-binding protein-li 60.5 2e-09 gi|15227173|ref|NP_179816.1| GTP binding [Arabidopsis thalian... 60.5 2e-09 gi|8953407|emb|CAB96682.1| GTP-binding protein [Arabidopsis thal 60.5 2e-09 gi|115461617|ref|NP_001054408.1| Os05g0105100 [Oryza sativa (... 60.5 2e-09 gi|623592|gb|AAA74120.1| putative 60.5 2e-09 gi|267527|sp|Q01111|YPT3_NICPL Ras-related protein YPT3 >gi|1... 60.5 2e-09 gi|15232652|ref|NP_190267.1| GTP binding [Arabidopsis thalian... 60.5 2e-09 gi|3024504|sp|Q40521|RB11B_TOBAC Ras-related protein Rab11B >gi| 60.5 2e-09 gi|116061486|emb|CAL52204.1| Rab1 small GTPase from the Rab s... 60.1 2e-09 gi|549813|sp|P36864|YPTV5_VOLCA GTP-binding protein yptV5 >gi... 60.1 2e-09 gi|218228|dbj|BAA02904.1| ras-related GTP binding protein [Oryza 60.1 2e-09 gi|115468476|ref|NP_001057837.1| Os06g0551400 [Oryza sativa (... 60.1 2e-09 gi|15221477|ref|NP_172128.1| ARA2; GTP binding [Arabidopsis t... 60.1 2e-09 gi|15219943|ref|NP_173688.1| RAB7; GTP binding [Arabidopsis t... 60.1 2e-09 gi|2500075|sp|Q39573|YPTC5_CHLRE GTP-binding protein YPTC5 >gi|8 60.1 2e-09 gi|6688535|emb|CAB65172.1| Rab11 GTPase [Solanum lycopersicum] 59.7 3e-09 gi|1381676|gb|AAB97114.1| small GTP-binding protein [Glycine max 59.7 3e-09 gi|623586|gb|AAA74117.1| putative 59.7 3e-09 gi|15236081|ref|NP_195699.1| GTP binding [Arabidopsis thalian... 59.7 3e-09 gi|3024500|sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A >... 59.7 3e-09 gi|15232477|ref|NP_188124.1| GTP binding [Arabidopsis thalian... 59.7 3e-09 gi|3914558|sp|Q41640|RAB7_VIGAC Ras-related protein Rab7 >gi|414 59.7 3e-09 gi|108706607|gb|ABF94402.1| Ras-related protein Rab-6A, putat... 59.3 4e-09 gi|108706608|gb|ABF94403.1| Ras-related protein Rab-6A, putat... 59.3 4e-09 gi|92871863|gb|ABE80757.1| Sigma-54 factor, interaction regio... 59.3 4e-09 gi|49333370|gb|AAT64010.1| putative GTP-binding protein [Gossypi 59.3 4e-09 gi|49333384|gb|AAT64023.1| putative GTP-binding protein [Gossypi 59.3 4e-09 gi|115456519|ref|NP_001051860.1| Os03g0843100 [Oryza sativa (... 59.3 4e-09 gi|72384491|gb|AAZ67607.1| 80A08_22 [Brassica rapa subsp. pekine 59.3 4e-09 gi|15230422|ref|NP_187823.1| GTP binding [Arabidopsis thalian... 59.3 4e-09 gi|218204|dbj|BAA02437.1| GTP binding protein [Oryza sativa (... 59.3 4e-09
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 141 Number of extensions: 4 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 186 Length of database: 101054579 Length adjustment: 34 Effective length of query: 152 Effective length of database: 91420713 Effective search space: 2559779964 Effective search space used: 2559779964 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)