RID=1168927883-6575-159469071526.BLASTQ1, Contig54

Alignments
 

>gi|30689218|ref|NP_565991.2|  PIF4 (PHYTOCHROME INTERACTING FACTOR 4); DNA binding / transcription 
factor [Arabidopsis thaliana]
 gi|28201855|sp|Q8W2F3|PIF4_ARATH  Phytochrome-interacting factor 4 (Basic helix-loop-helix protein 
9) (bHLH 9) (AtbHLH009) (Short under red-light 2)
 gi|18026966|gb|AAL55716.1|AF251694_1  putative transcription factor BHLH9 [Arabidopsis thaliana]
 gi|21068661|emb|CAD29449.1|  phytochrome interacting factor 4 [Arabidopsis thaliana]
Length=430

 Score = 64.3 bits (155),  Expect(2) = 2e-16
 Identities = 43/108 (39%), Positives = 56/108 (51%), Gaps = 30/108 (27%)
 Frame = -2

Query  304  QVMWMGSGM------APMMFPGIQHYMSRMGIGMGPPPLPSIHNPLHLSRVPVVDQSMSM  143
            QVMWMGSGM      APMMFPG+Q              +  I +P+ L R PV+DQS   
Sbjct  311  QVMWMGSGMAAAAASAPMMFPGVQPQQF----------IRQIQSPVQLPRFPVMDQS---  357

Query  142  APSQNQAATCQTQQLNQVNYQHPMQNPTFSEQYARFL-GFHHMQTASQ  2
            A   N    C          Q+P+QN   S+++AR++ GF HMQ A+Q
Sbjct  358  AIQNNPGLVC----------QNPVQNQIISDRFARYIGGFPHMQAATQ  395


 Score = 40.4 bits (93),  Expect(2) = 2e-16
 Identities = 19/24 (79%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKAS+LDEAI+Y+KS QLQLQV
Sbjct  289  KTDKASILDEAIDYLKSLQLQLQV  312


>gi|30689224|ref|NP_850381.1|  PIF4 (PHYTOCHROME INTERACTING FACTOR 4); DNA binding / transcription 
factor [Arabidopsis thaliana]
Length=428

 Score = 64.3 bits (155),  Expect(2) = 2e-16
 Identities = 43/108 (39%), Positives = 56/108 (51%), Gaps = 30/108 (27%)
 Frame = -2

Query  304  QVMWMGSGM------APMMFPGIQHYMSRMGIGMGPPPLPSIHNPLHLSRVPVVDQSMSM  143
            QVMWMGSGM      APMMFPG+Q              +  I +P+ L R PV+DQS   
Sbjct  311  QVMWMGSGMAAAAASAPMMFPGVQPQQF----------IRQIQSPVQLPRFPVMDQS---  357

Query  142  APSQNQAATCQTQQLNQVNYQHPMQNPTFSEQYARFL-GFHHMQTASQ  2
            A   N    C          Q+P+QN   S+++AR++ GF HMQ A+Q
Sbjct  358  AIQNNPGLVC----------QNPVQNQIISDRFARYIGGFPHMQAATQ  395


 Score = 40.4 bits (93),  Expect(2) = 2e-16
 Identities = 19/24 (79%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKAS+LDEAI+Y+KS QLQLQV
Sbjct  289  KTDKASILDEAIDYLKSLQLQLQV  312


>gi|25408828|pir||H84860  hypothetical protein At2g43010 [imported] - Arabidopsis thaliana
Length=423

 Score = 64.3 bits (155),  Expect(2) = 2e-16
 Identities = 43/108 (39%), Positives = 56/108 (51%), Gaps = 30/108 (27%)
 Frame = -2

Query  304  QVMWMGSGM------APMMFPGIQHYMSRMGIGMGPPPLPSIHNPLHLSRVPVVDQSMSM  143
            QVMWMGSGM      APMMFPG+Q              +  I +P+ L R PV+DQS   
Sbjct  306  QVMWMGSGMAAAAASAPMMFPGVQPQQF----------IRQIQSPVQLPRFPVMDQS---  352

Query  142  APSQNQAATCQTQQLNQVNYQHPMQNPTFSEQYARFL-GFHHMQTASQ  2
            A   N    C          Q+P+QN   S+++AR++ GF HMQ A+Q
Sbjct  353  AIQNNPGLVC----------QNPVQNQIISDRFARYIGGFPHMQAATQ  390


 Score = 40.4 bits (93),  Expect(2) = 2e-16
 Identities = 19/24 (79%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKAS+LDEAI+Y+KS QLQLQV
Sbjct  284  KTDKASILDEAIDYLKSLQLQLQV  307


>gi|108711402|gb|ABF99197.1|  Helix-loop-helix DNA-binding domain containing protein, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=421

 Score = 62.8 bits (151),  Expect(2) = 1e-15
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
 Frame = -2

Query  304  QVMWMGSGMAPMMFPGIQHYMSRMGIGMGPPPLPSIHNPLHLSRVPVVDQSMSMAPSQNQ  125
            Q+MWM +GMAPMMFPG   +M  M +GM    +P+     H+SR+P ++ SM      N 
Sbjct  285  QIMWMTTGMAPMMFPGAHQFMPPMAVGMNSACMPAAQGLSHMSRLPYMNHSM-----PNH  339

Query  124  AATCQTQQLNQVNYQHPMQNPTFSEQYARFL  32
                 +  +N +N  + MQN    E    FL
Sbjct  340  IPLNSSPAMNPMNVANQMQNIQLREASNPFL  370


 Score = 39.3 bits (90),  Expect(2) = 1e-15
 Identities = 17/24 (70%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKAS+LDEAIEY+KS Q+Q+Q+
Sbjct  263  KTDKASILDEAIEYLKSLQMQVQI  286


>gi|115455729|ref|NP_001051465.1|  Os03g0782500 [Oryza sativa (japonica cultivar-group)]
 gi|108711401|gb|ABF99196.1|  Helix-loop-helix DNA-binding domain containing protein, expressed 
[Oryza sativa (japonica cultivar-group)]
 gi|108711403|gb|ABF99198.1|  Helix-loop-helix DNA-binding domain containing protein, expressed 
[Oryza sativa (japonica cultivar-group)]
 gi|113549936|dbj|BAF13379.1|  Os03g0782500 [Oryza sativa (japonica cultivar-group)]
Length=410

 Score = 62.8 bits (151),  Expect(2) = 1e-15
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
 Frame = -2

Query  304  QVMWMGSGMAPMMFPGIQHYMSRMGIGMGPPPLPSIHNPLHLSRVPVVDQSMSMAPSQNQ  125
            Q+MWM +GMAPMMFPG   +M  M +GM    +P+     H+SR+P ++ SM      N 
Sbjct  274  QIMWMTTGMAPMMFPGAHQFMPPMAVGMNSACMPAAQGLSHMSRLPYMNHSM-----PNH  328

Query  124  AATCQTQQLNQVNYQHPMQNPTFSEQYARFL  32
                 +  +N +N  + MQN    E    FL
Sbjct  329  IPLNSSPAMNPMNVANQMQNIQLREASNPFL  359


 Score = 39.3 bits (90),  Expect(2) = 1e-15
 Identities = 17/24 (70%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKAS+LDEAIEY+KS Q+Q+Q+
Sbjct  252  KTDKASILDEAIEYLKSLQMQVQI  275


>gi|30694919|ref|NP_851021.1|  PIL6 (PHYTOCHROME-INTERACTING FACTOR 5); DNA binding / transcription 
factor [Arabidopsis thaliana]
 gi|7529749|emb|CAB86934.1|  putative protein [Arabidopsis thaliana]
Length=442

 Score = 56.6 bits (135),  Expect(2) = 7e-14
 Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 27/102 (26%)
 Frame = -2

Query  304  QVMWMGSGMA--------PMMFPGIQH--YMSRMGIGMGPPPLPSIHNPLHLSRVPVVDQ  155
            QVMWMGSGMA        PMMFPG+Q   Y+++M          ++ + + LS+ PV+++
Sbjct  310  QVMWMGSGMAAAAAAAASPMMFPGVQSSPYINQM----------AMQSQMQLSQFPVMNR  359

Query  154  SMSMAPSQNQAATCQTQQLNQVNYQHPMQNPTFSEQYARFLG  29
            S   AP  +    CQ    N V  Q   QN   SEQ AR++G
Sbjct  360  S---APQNHPGLVCQ----NPVQLQLQAQNQILSEQLARYMG  394


 Score = 39.7 bits (91),  Expect(2) = 7e-14
 Identities = 18/24 (75%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKAS+LDEAI+Y+KS Q+QLQV
Sbjct  288  RTDKASILDEAIDYLKSLQMQLQV  311


>gi|30694924|ref|NP_191465.3|  PIL6 (PHYTOCHROME-INTERACTING FACTOR 5); DNA binding / transcription 
factor [Arabidopsis thaliana]
 gi|79315658|ref|NP_001030889.1|  PIL6 (PHYTOCHROME-INTERACTING FACTOR 5); DNA binding / transcription 
factor [Arabidopsis thaliana]
 gi|79315685|ref|NP_001030890.1|  PIL6 (PHYTOCHROME-INTERACTING FACTOR 5); DNA binding / transcription 
factor [Arabidopsis thaliana]
 gi|28372349|dbj|BAC56978.1|  PIF3 like basic Helix Loop Helix protein [Arabidopsis thaliana]
Length=444

 Score = 56.6 bits (135),  Expect(2) = 7e-14
 Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 27/102 (26%)
 Frame = -2

Query  304  QVMWMGSGMA--------PMMFPGIQH--YMSRMGIGMGPPPLPSIHNPLHLSRVPVVDQ  155
            QVMWMGSGMA        PMMFPG+Q   Y+++M          ++ + + LS+ PV+++
Sbjct  310  QVMWMGSGMAAAAAAAASPMMFPGVQSSPYINQM----------AMQSQMQLSQFPVMNR  359

Query  154  SMSMAPSQNQAATCQTQQLNQVNYQHPMQNPTFSEQYARFLG  29
            S   AP  +    CQ    N V  Q   QN   SEQ AR++G
Sbjct  360  S---APQNHPGLVCQ----NPVQLQLQAQNQILSEQLARYMG  394


 Score = 39.7 bits (91),  Expect(2) = 7e-14
 Identities = 18/24 (75%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKAS+LDEAI+Y+KS Q+QLQV
Sbjct  288  RTDKASILDEAIDYLKSLQMQLQV  311


>gi|20127070|gb|AAM10954.1|AF488598_1  putative bHLH transcription factor [Arabidopsis thaliana]
Length=442

 Score = 56.2 bits (134),  Expect(2) = 9e-14
 Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 27/102 (26%)
 Frame = -2

Query  304  QVMWMGSGMA--------PMMFPGIQH--YMSRMGIGMGPPPLPSIHNPLHLSRVPVVDQ  155
            QVMWMGSGMA        PMMFPG+Q   Y+++M          ++ + + LS+ PV+++
Sbjct  310  QVMWMGSGMAAAAAAAASPMMFPGVQSSPYINQM----------AMQSQMQLSQFPVMNR  359

Query  154  SMSMAPSQNQAATCQTQQLNQVNYQHPMQNPTFSEQYARFLG  29
            S   AP  +    C    LN V  Q   QN   SEQ AR++G
Sbjct  360  S---APQNHPGLVC----LNPVQLQLQAQNQILSEQLARYMG  394


 Score = 39.7 bits (91),  Expect(2) = 9e-14
 Identities = 18/24 (75%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKAS+LDEAI+Y+KS Q+QLQV
Sbjct  288  RTDKASILDEAIDYLKSLQMQLQV  311


>gi|108710018|gb|ABF97813.1|  Helix-loop-helix DNA-binding domain containing protein, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=485

 Score = 52.4 bits (124),  Expect(2) = 3e-13
 Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -2

Query  304  QVMWMGSGMAP-MMFPGIQHYMSRMGIGMGPPPLPSIHNPLHLSRVPVV  161
            Q+MWMGSGMAP +MFPG+  Y+ RMG+GMG         P   +  PVV
Sbjct  372  QMMWMGSGMAPPVMFPGVHQYLPRMGVGMGAAAAAMPRMPFMAAPQPVV  420


 Score = 42.0 bits (97),  Expect(2) = 3e-13
 Identities = 20/24 (83%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDEAIEY+KS QLQLQ+
Sbjct  350  KTDKASMLDEAIEYLKSLQLQLQM  373


>gi|108710019|gb|ABF97814.1|  Helix-loop-helix DNA-binding domain containing protein, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=481

 Score = 52.4 bits (124),  Expect(2) = 3e-13
 Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -2

Query  304  QVMWMGSGMAP-MMFPGIQHYMSRMGIGMGPPPLPSIHNPLHLSRVPVV  161
            Q+MWMGSGMAP +MFPG+  Y+ RMG+GMG         P   +  PVV
Sbjct  372  QMMWMGSGMAPPVMFPGVHQYLPRMGVGMGAAAAAMPRMPFMAAPQPVV  420


 Score = 42.0 bits (97),  Expect(2) = 3e-13
 Identities = 20/24 (83%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDEAIEY+KS QLQLQ+
Sbjct  350  KTDKASMLDEAIEYLKSLQLQLQM  373


>gi|115454269|ref|NP_001050735.1|  Os03g0639300 [Oryza sativa (japonica cultivar-group)]
 gi|113549206|dbj|BAF12649.1|  Os03g0639300 [Oryza sativa (japonica cultivar-group)]
Length=334

 Score = 52.4 bits (124),  Expect(2) = 3e-13
 Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -2

Query  304  QVMWMGSGMAP-MMFPGIQHYMSRMGIGMGPPPLPSIHNPLHLSRVPVV  161
            Q+MWMGSGMAP +MFPG+  Y+ RMG+GMG         P   +  PVV
Sbjct  221  QMMWMGSGMAPPVMFPGVHQYLPRMGVGMGAAAAAMPRMPFMAAPQPVV  269


 Score = 42.0 bits (97),  Expect(2) = 3e-13
 Identities = 20/24 (83%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDEAIEY+KS QLQLQ+
Sbjct  199  KTDKASMLDEAIEYLKSLQLQLQM  222


>gi|108862947|gb|ABA99362.2|  Helix-loop-helix DNA-binding domain containing protein, expressed 
[Oryza sativa (japonica cultivar-group)]
Length=446

 Score = 51.6 bits (122),  Expect(2) = 4e-13
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
 Frame = -2

Query  304  QVMWMGSGMAP--MMFP--GIQHYMSRMG-IGMGPPPLPSI-HNPLHLSRVPVVDQSMSM  143
            Q+MWMG GMAP  +MFP  G+  YM RMG +GMGPP + S+   P  ++  P   QS  +
Sbjct  323  QMMWMGGGMAPPAVMFPAAGVHQYMQRMGAVGMGPPHMASLPRMPPFMAPPPAAVQSSPV  382

Query  142  APSQNQAATCQTQQLNQVNYQHPMQNPTFSEQYARFLGFHHMQTA  8
                +  A C       +   H +Q P   + Y + + F+ +  A
Sbjct  383  VSMADPYARC-------LAVDH-LQPPPPMQHYLQGMSFYQLAAA  419


 Score = 42.0 bits (97),  Expect(2) = 4e-13
 Identities = 20/24 (83%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDEAIEY+KS QLQLQ+
Sbjct  301  KTDKASMLDEAIEYLKSLQLQLQM  324


>gi|115489518|ref|NP_001067246.1|  Os12g0610200 [Oryza sativa (japonica cultivar-group)]
 gi|77556567|gb|ABA99363.1|  Helix-loop-helix DNA-binding domain containing protein, expressed 
[Oryza sativa (japonica cultivar-group)]
 gi|108862946|gb|ABA99364.2|  Helix-loop-helix DNA-binding domain containing protein, expressed 
[Oryza sativa (japonica cultivar-group)]
 gi|113649753|dbj|BAF30265.1|  Os12g0610200 [Oryza sativa (japonica cultivar-group)]
Length=445

 Score = 50.4 bits (119),  Expect(2) = 9e-13
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
 Frame = -2

Query  304  QVMWMGSGMAP--MMFP--GIQHYMSRMG-IGMGPPPLPSI-HNPLHLSRVPVVDQSMSM  143
            Q+MWMG GMAP  +MFP  G+  YM RMG +GMGPP + S+   P  ++  P   QS  +
Sbjct  323  QMMWMGGGMAPPAVMFPAAGVHQYMQRMGAVGMGPPHMASLPRMPPFMAPPPAAVQSSPV  382

Query  142  APSQNQAATC  113
                +  A C
Sbjct  383  VSMADPYARC  392


 Score = 42.0 bits (97),  Expect(2) = 9e-13
 Identities = 20/24 (83%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDEAIEY+KS QLQLQ+
Sbjct  301  KTDKASMLDEAIEYLKSLQLQLQM  324


>gi|4580456|gb|AAD24380.1|  unknown protein [Arabidopsis thaliana]
Length=490

 Score = 51.2 bits (121),  Expect(2) = 1e-12
 Identities = 40/116 (34%), Positives = 48/116 (41%), Gaps = 30/116 (25%)
 Frame = -2

Query  304  QVMWMGSGMAPMMFPGIQHYMSRMGIGMG-----PP--------------PLPSIHN---  191
            Q+M MG GM PMM+PG+Q YM  M +GMG     PP              PLP+  +   
Sbjct  338  QMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPSFMPFPNMLAAQRPLPTQTHMAG  397

Query  190  -----PLHL---SRVPVVDQSMSMAPSQNQAATCQTQQLNQVNYQHPMQNPTFSEQ  47
                 P+H    SRV V +Q       Q Q     T    Q    HP Q P F  Q
Sbjct  398  SGPQYPVHASDPSRVFVPNQQYDPTSGQPQYPAGYTDPYQQFRGLHPTQPPQFQNQ  453


 Score = 40.8 bits (94),  Expect(2) = 1e-12
 Identities = 19/24 (79%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            ++DKASMLDEAIEYMKS QLQ+Q+
Sbjct  316  KSDKASMLDEAIEYMKSLQLQIQM  339


>gi|30680909|ref|NP_179608.2|  PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5); transcription 
factor [Arabidopsis thaliana]
 gi|26051284|gb|AAN78308.1|  putative bHLH transcription factor [Arabidopsis thaliana]
 gi|28372351|dbj|BAC56979.1|  PIF3 like basic Helix Loop Helix protein [Arabidopsis thaliana]
Length=478

 Score = 51.2 bits (121),  Expect(2) = 1e-12
 Identities = 40/116 (34%), Positives = 48/116 (41%), Gaps = 30/116 (25%)
 Frame = -2

Query  304  QVMWMGSGMAPMMFPGIQHYMSRMGIGMG-----PP--------------PLPSIHN---  191
            Q+M MG GM PMM+PG+Q YM  M +GMG     PP              PLP+  +   
Sbjct  338  QMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPSFMPFPNMLAAQRPLPTQTHMAG  397

Query  190  -----PLHL---SRVPVVDQSMSMAPSQNQAATCQTQQLNQVNYQHPMQNPTFSEQ  47
                 P+H    SRV V +Q       Q Q     T    Q    HP Q P F  Q
Sbjct  398  SGPQYPVHASDPSRVFVPNQQYDPTSGQPQYPAGYTDPYQQFRGLHPTQPPQFQNQ  453


 Score = 40.8 bits (94),  Expect(2) = 1e-12
 Identities = 19/24 (79%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            ++DKASMLDEAIEYMKS QLQ+Q+
Sbjct  316  KSDKASMLDEAIEYMKSLQLQIQM  339


>gi|110737548|dbj|BAF00716.1|  putative bHLH transcription factor [Arabidopsis thaliana]
Length=407

 Score = 51.2 bits (121),  Expect(2) = 1e-12
 Identities = 40/116 (34%), Positives = 48/116 (41%), Gaps = 30/116 (25%)
 Frame = -2

Query  304  QVMWMGSGMAPMMFPGIQHYMSRMGIGMG-----PP--------------PLPSIHN---  191
            Q+M MG GM PMM+PG+Q YM  M +GMG     PP              PLP+  +   
Sbjct  267  QMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPSFMPFPNMLAAQRPLPTQTHMAG  326

Query  190  -----PLHL---SRVPVVDQSMSMAPSQNQAATCQTQQLNQVNYQHPMQNPTFSEQ  47
                 P+H    SRV V +Q       Q Q     T    Q    HP Q P F  Q
Sbjct  327  SGPQYPVHASDPSRVFVPNQQYDPTSGQPQYPAGYTDPYQQFRGLHPTQPPQFQNQ  382


 Score = 40.8 bits (94),  Expect(2) = 1e-12
 Identities = 19/24 (79%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            ++DKASMLDEAIEYMKS QLQ+Q+
Sbjct  245  KSDKASMLDEAIEYMKSLQLQIQM  268


>gi|30680903|ref|NP_849996.1|  PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5); transcription 
factor [Arabidopsis thaliana]
 gi|119935961|gb|ABM06045.1|  At2g20180 [Arabidopsis thaliana]
Length=407

 Score = 51.2 bits (121),  Expect(2) = 1e-12
 Identities = 40/116 (34%), Positives = 48/116 (41%), Gaps = 30/116 (25%)
 Frame = -2

Query  304  QVMWMGSGMAPMMFPGIQHYMSRMGIGMG-----PP--------------PLPSIHN---  191
            Q+M MG GM PMM+PG+Q YM  M +GMG     PP              PLP+  +   
Sbjct  267  QMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPSFMPFPNMLAAQRPLPTQTHMAG  326

Query  190  -----PLHL---SRVPVVDQSMSMAPSQNQAATCQTQQLNQVNYQHPMQNPTFSEQ  47
                 P+H    SRV V +Q       Q Q     T    Q    HP Q P F  Q
Sbjct  327  SGPQYPVHASDPSRVFVPNQQYDPTSGQPQYPAGYTDPYQQFRGLHPTQPPQFQNQ  382


 Score = 40.8 bits (94),  Expect(2) = 1e-12
 Identities = 19/24 (79%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            ++DKASMLDEAIEYMKS QLQ+Q+
Sbjct  245  KSDKASMLDEAIEYMKSLQLQIQM  268


>gi|31043851|emb|CAD32238.1|  BP-5 protein [Oryza sativa]
Length=335

 Score = 47.8 bits (112),  Expect(2) = 8e-12
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -2

Query  304  QVMWMGSGMAP-MMFPGIQHYMSRMGIGMGPPPLPSIHNPLHLSRVPVV  161
            +VMWMGSGMAP +MFPG+  Y+ RMG+ +G         P   +  PVV
Sbjct  222  RVMWMGSGMAPPLMFPGVHQYLPRMGVRIGAXAAAMPRMPFMAAPQPVV  270


 Score = 41.6 bits (96),  Expect(2) = 8e-12
 Identities = 20/24 (83%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDEAIEY+KS QLQL+V
Sbjct  200  KTDKASMLDEAIEYLKSLQLQLRV  223


>gi|23495742|dbj|BAC19953.1|  transcription factor BHLH9-like protein [Oryza sativa (japonica 
cultivar-group)]
 gi|24059945|dbj|BAC21408.1|  transcription factor BHLH9-like protein [Oryza sativa (japonica 
cultivar-group)]
Length=417

 Score = 41.2 bits (95),  Expect(2) = 3e-09
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 0/34 (0%)
 Frame = -2

Query  304  QVMWMGSGMAPMMFPGIQHYMSRMGIGMGPPPLP  203
            Q+MWM +G+ PMMFPG    M  MG+G+    +P
Sbjct  282  QIMWMTTGIVPMMFPGTHQLMPPMGMGLNTACMP  315


 Score = 39.3 bits (90),  Expect(2) = 3e-09
 Identities = 17/24 (70%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKAS+LDEAIEY+KS Q+Q+Q+
Sbjct  260  KTDKASILDEAIEYLKSLQMQVQI  283


>gi|115470555|ref|NP_001058876.1|  Os07g0143200 [Oryza sativa (japonica cultivar-group)]
 gi|113610412|dbj|BAF20790.1|  Os07g0143200 [Oryza sativa (japonica cultivar-group)]
Length=403

 Score = 41.2 bits (95),  Expect(2) = 3e-09
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 0/34 (0%)
 Frame = -2

Query  304  QVMWMGSGMAPMMFPGIQHYMSRMGIGMGPPPLP  203
            Q+MWM +G+ PMMFPG    M  MG+G+    +P
Sbjct  279  QIMWMTTGIVPMMFPGTHQLMPPMGMGLNTACMP  312


 Score = 39.3 bits (90),  Expect(2) = 3e-09
 Identities = 17/24 (70%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKAS+LDEAIEY+KS Q+Q+Q+
Sbjct  257  KTDKASILDEAIEYLKSLQMQVQI  280


>gi|90399331|emb|CAJ86131.1|  H0313F03.15 [Oryza sativa (indica cultivar-group)]
Length=307

 Score = 40.4 bits (93),  Expect(2) = 2e-07
 Identities = 18/27 (66%), Positives = 24/27 (88%), Gaps = 0/27 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQVWIL  376
            +TDK SMLDEAI+Y+KS QLQLQ+ ++
Sbjct  171  KTDKVSMLDEAIDYLKSLQLQLQMLVM  197


 Score = 33.9 bits (76),  Expect(2) = 2e-07
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
 Frame = -2

Query  304  QVMWMGSGMAPMMFPGIQHYMSRMGIGMG--PPPLPSIHNPLHLSRVPVVDQSMSMAPSQ  131
            Q++ MG GMAP++ P +Q YM  +       PP  PS   P  ++             +Q
Sbjct  193  QMLVMGKGMAPVVPPELQQYMHYITADPSQIPPIRPSEPRPFQITHA-----------TQ  241

Query  130  NQAATCQTQQLNQVNYQHPMQNP  62
             + +  ++  L+Q+   HP + P
Sbjct  242  QRQSNVESDFLSQMQNLHPSEPP  264


>gi|115460586|ref|NP_001053893.1|  Os04g0618600 [Oryza sativa (japonica cultivar-group)]
 gi|38344324|emb|CAE02150.2|  OSJNBa0058K23.6 [Oryza sativa (japonica cultivar-group)]
 gi|113565464|dbj|BAF15807.1|  Os04g0618600 [Oryza sativa (japonica cultivar-group)]
Length=181

 Score = 40.4 bits (93),  Expect(2) = 2e-07
 Identities = 18/27 (66%), Positives = 24/27 (88%), Gaps = 0/27 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQVWIL  376
            +TDK SMLDEAI+Y+KS QLQLQ+ ++
Sbjct  45   KTDKVSMLDEAIDYLKSLQLQLQMLVM  71


 Score = 33.9 bits (76),  Expect(2) = 2e-07
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 13/83 (15%)
 Frame = -2

Query  304  QVMWMGSGMAPMMFPGIQHYMSRMGIGMG--PPPLPSIHNPLHLSRVPVVDQSMSMAPSQ  131
            Q++ MG GMAP++ P +Q YM  +       PP  PS   P  ++             +Q
Sbjct  67   QMLVMGKGMAPVVPPELQQYMHYITADPSQIPPIRPSEPRPFQITHA-----------TQ  115

Query  130  NQAATCQTQQLNQVNYQHPMQNP  62
             + +  ++  L+Q+   HP + P
Sbjct  116  QRQSNVESDFLSQMQNLHPSEPP  138


>gi|26185713|emb|CAD58595.1|  putative bHLH transcription factor [Arabidopsis thaliana]
Length=175

 Score = 35.8 bits (81),  Expect(2) = 2e-06
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
 Frame = -2

Query  304  QVMWMGSGMAP-MMFPG-IQHYMSRMGIGMG----PPPL-----PSIHNPLHLSRVPVVD  158
            Q+M MG GM P MM  G  Q +M  M +GM     PPP       +   P H++ V    
Sbjct  42   QMMSMGHGMMPPMMHEGNTQQFMPHMAMGMKGMNRPPPFVPFPGKTFPRPGHMAGVGPSY  101

Query  157  QSMSMAPSQNQAATCQTQQLNQVNYQHPMQN----PTFSEQYARFLGFHHMQ  14
             ++       QA+      +  + + +P+ N    P +   Y++F+G H MQ
Sbjct  102  PALRYPFPDTQASDLSRVHVPSL-HSNPVPNQPRFPAYINPYSQFVGLHQMQ  152


 Score = 35.0 bits (79),  Expect(2) = 2e-06
 Identities = 15/24 (62%), Positives = 21/24 (87%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDK SML++ IEY+KS QLQ+Q+
Sbjct  20   KTDKVSMLEDVIEYVKSLQLQIQM  43


>gi|87241328|gb|ABD33186.1|  Basic helix-loop-helix dimerisation region bHLH [Medicago truncatula]
Length=689

 Score = 44.3 bits (103),  Expect = 3e-04
 Identities = 21/28 (75%), Positives = 24/28 (85%), Gaps = 0/28 (0%)
 Frame = -3

Query  468  VLMLQTDKASMLDEAIEYMKSPQLQLQV  385
            +  LQ DKASMLDEAIEY+KS QLQLQ+
Sbjct  464  LFFLQADKASMLDEAIEYLKSLQLQLQI  491


>gi|115466606|ref|NP_001056902.1|  Os06g0164400 [Oryza sativa (japonica cultivar-group)]
 gi|113594942|dbj|BAF18816.1|  Os06g0164400 [Oryza sativa (japonica cultivar-group)]
Length=525

 Score = 42.4 bits (98),  Expect = 0.001
 Identities = 20/25 (80%), Positives = 23/25 (92%), Gaps = 0/25 (0%)
 Frame = -3

Query  459  LQTDKASMLDEAIEYMKSPQLQLQV  385
            LQTDKASMLDEAIEY+K  QLQ+Q+
Sbjct  352  LQTDKASMLDEAIEYLKQLQLQVQM  376


>gi|42567227|ref|NP_194608.3|  transcription factor [Arabidopsis thaliana]
 gi|4218119|emb|CAA22973.1|  putative protein [Arabidopsis thaliana]
 gi|7269734|emb|CAB81467.1|  putative protein [Arabidopsis thaliana]
Length=413

 Score = 33.9 bits (76),  Expect(2) = 0.003
 Identities = 14/25 (56%), Positives = 22/25 (88%), Gaps = 0/25 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQVW  382
            +TD++SMLD+ IEY+KS Q Q+Q++
Sbjct  309  KTDRSSMLDDVIEYVKSLQSQIQMF  333


 Score = 26.2 bits (56),  Expect(2) = 0.003
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query  304  QVMWMGSGMAP-MMFPGI--QHYMSRMGIGMGPPP  209
            Q+  MG  M P MM+ G   Q YM  M +GM  PP
Sbjct  331  QMFSMGHVMIPPMMYAGNIQQQYMPHMAMGMNRPP  365


>gi|92888886|gb|ABE89599.1|  Helix-loop-helix DNA-binding domain, putative [Medicago truncatula]
Length=267

 Score = 39.7 bits (91),  Expect = 0.006
 Identities = 21/28 (75%), Positives = 25/28 (89%), Gaps = 2/28 (7%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQVWILL  373
            +TDKASMLDEAIEY+K  QLQLQV +L+
Sbjct  123  KTDKASMLDEAIEYLK--QLQLQVQMLM  148


>gi|4093153|gb|AAC99771.1|  phytochrome-associated protein 3 [Arabidopsis thaliana]
Length=524

 Score = 39.7 bits (91),  Expect = 0.006
 Identities = 18/24 (75%), Positives = 22/24 (91%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            + DKASMLDEAIEY+KS QLQ+Q+
Sbjct  375  KVDKASMLDEAIEYLKSLQLQVQI  398


>gi|15217533|ref|NP_172424.1|  PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / transcription 
factor/ transcription regulator [Arabidopsis thaliana]
 gi|30681206|ref|NP_849626.1|  PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / transcription 
factor/ transcription regulator [Arabidopsis thaliana]
 gi|20532207|sp|O80536|PIF3_ARATH  Phytochrome-interacting factor 3 (Phytochrome-associated protein 
3) (Basic helix-loop-helix protein 8) (bHLH 8) (AtbHLH008)
 gi|18026964|gb|AAL55715.1|AF251693_1  putative transcription factor BHLH8 [Arabidopsis thaliana]
 gi|3482928|gb|AAC33213.1|  Unknown protein [Arabidopsis thaliana]
 gi|3929586|gb|AAC95156.1|  phytochrome interacting factor 3 [Arabidopsis thaliana]
 gi|26449609|dbj|BAC41930.1|  putative transcription factor BHLH8 [Arabidopsis thaliana]
Length=524

 Score = 39.7 bits (91),  Expect = 0.006
 Identities = 18/24 (75%), Positives = 22/24 (91%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            + DKASMLDEAIEY+KS QLQ+Q+
Sbjct  375  KVDKASMLDEAIEYLKSLQLQVQI  398


>gi|92897142|gb|ABE93546.1|  Helix-loop-helix DNA-binding [Medicago truncatula]
Length=344

 Score = 39.3 bits (90),  Expect = 0.008
 Identities = 18/24 (75%), Positives = 22/24 (91%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDEAIEY+K  QLQ+Q+
Sbjct  143  KTDKASMLDEAIEYLKQLQLQVQM  166


>gi|54306640|gb|AAV33474.1|  basic helix-loop-helix protein [Fragaria x ananassa]
Length=298

 Score = 39.3 bits (90),  Expect = 0.008
 Identities = 18/24 (75%), Positives = 22/24 (91%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDEAIEY+K  QLQ+Q+
Sbjct  176  KTDKASMLDEAIEYLKQLQLQVQM  199


>gi|21536863|gb|AAM61195.1|  unknown [Arabidopsis thaliana]
Length=210

 Score = 39.3 bits (90),  Expect = 0.008
 Identities = 18/29 (62%), Positives = 24/29 (82%), Gaps = 0/29 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQVWILLD  370
            +TDKASMLDEAIEY+K  QLQ+Q   +++
Sbjct  125  KTDKASMLDEAIEYLKQLQLQVQTLAVMN  153


>gi|4006880|emb|CAB16798.1|  putative protein [Arabidopsis thaliana]
 gi|7270642|emb|CAB80359.1|  putative protein [Arabidopsis thaliana]
Length=415

 Score = 39.3 bits (90),  Expect = 0.008
 Identities = 18/24 (75%), Positives = 22/24 (91%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDEAIEY+K  QLQ+Q+
Sbjct  229  KTDKASMLDEAIEYLKQLQLQVQM  252


>gi|55296133|dbj|BAD67851.1|  basic helix-loop-helix protein SPATULA-like [Oryza sativa (japonica 
cultivar-group)]
Length=315

 Score = 39.3 bits (90),  Expect = 0.008
 Identities = 18/24 (75%), Positives = 22/24 (91%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDEAIEY+K  QLQ+Q+
Sbjct  135  KTDKASMLDEAIEYLKQLQLQVQM  158


>gi|51970054|dbj|BAD43719.1|  putative bHLH transcription factor (bHLH073/ALCATRAZ) [Arabidopsis 
thaliana]
Length=210

 Score = 39.3 bits (90),  Expect = 0.008
 Identities = 18/29 (62%), Positives = 24/29 (82%), Gaps = 0/29 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQVWILLD  370
            +TDKASMLDEAIEY+K  QLQ+Q   +++
Sbjct  125  KTDKASMLDEAIEYLKQLQLQVQTLAVMN  153


>gi|15240202|ref|NP_201512.1|  ALC (ALCATRAZ); DNA binding / transcription factor [Arabidopsis 
thaliana]
 gi|10177598|dbj|BAB10945.1|  unnamed protein product [Arabidopsis thaliana]
 gi|114050687|gb|ABI49493.1|  At5g67110 [Arabidopsis thaliana]
Length=210

 Score = 39.3 bits (90),  Expect = 0.008
 Identities = 18/29 (62%), Positives = 24/29 (82%), Gaps = 0/29 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQVWILLD  370
            +TDKASMLDEAIEY+K  QLQ+Q   +++
Sbjct  125  KTDKASMLDEAIEYLKQLQLQVQTLAVMN  153


>gi|18419937|ref|NP_568010.1|  SPT (SPATULA); DNA binding / transcription factor [Arabidopsis 
thaliana]
 gi|75309699|sp|Q9FUA4|SPT_ARATH  Protein SPATULA
 gi|11245494|gb|AAG33640.1|AF319540_1  SPATULA [Arabidopsis thaliana]
 gi|110738410|dbj|BAF01131.1|  putative bHLH transcription factor (AtbHLH024) / SPATULA (SPT) 
[Arabidopsis thaliana]
 gi|111074392|gb|ABH04569.1|  At4g36930 [Arabidopsis thaliana]
Length=373

 Score = 39.3 bits (90),  Expect = 0.008
 Identities = 18/24 (75%), Positives = 22/24 (91%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDEAIEY+K  QLQ+Q+
Sbjct  229  KTDKASMLDEAIEYLKQLQLQVQM  252


>gi|15451582|gb|AAK98706.1|AC069158_18  Putative SPATULA [Oryza sativa]
Length=298

 Score = 38.1 bits (87),  Expect = 0.018
 Identities = 17/24 (70%), Positives = 22/24 (91%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLD+AIEY+K  QLQ+Q+
Sbjct  64   KTDKASMLDDAIEYLKQLQLQVQM  87


>gi|47497385|dbj|BAD19423.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=110

 Score = 38.1 bits (87),  Expect = 0.018
 Identities = 17/24 (70%), Positives = 22/24 (91%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLD+AIEY+K  QLQ+Q+
Sbjct  64   KTDKASMLDDAIEYLKQLQLQVQM  87


>gi|115436034|ref|NP_001042775.1|  Os01g0286100 [Oryza sativa (japonica cultivar-group)]
 gi|113532306|dbj|BAF04689.1|  Os01g0286100 [Oryza sativa (japonica cultivar-group)]
Length=731

 Score = 37.4 bits (85),  Expect = 0.031
 Identities = 17/22 (77%), Positives = 21/22 (95%), Gaps = 0/22 (0%)
 Frame = -3

Query  450  DKASMLDEAIEYMKSPQLQLQV  385
            DKASMLDEAIEY+K+ QLQ+Q+
Sbjct  512  DKASMLDEAIEYLKTLQLQVQM  533


>gi|56784181|dbj|BAD81566.1|  putative BP-5 protein [Oryza sativa (japonica cultivar-group)]
Length=565

 Score = 37.4 bits (85),  Expect = 0.031
 Identities = 17/22 (77%), Positives = 21/22 (95%), Gaps = 0/22 (0%)
 Frame = -3

Query  450  DKASMLDEAIEYMKSPQLQLQV  385
            DKASMLDEAIEY+K+ QLQ+Q+
Sbjct  346  DKASMLDEAIEYLKTLQLQVQM  367


>gi|50253024|dbj|BAD29274.1|  bHLH transcription factor PTF1-like protein [Oryza sativa (japonica 
cultivar-group)]
Length=499

 Score = 36.2 bits (82),  Expect = 0.069
 Identities = 16/25 (64%), Positives = 22/25 (88%), Gaps = 0/25 (0%)
 Frame = -3

Query  462  MLQTDKASMLDEAIEYMKSPQLQLQ  388
            ++QTDKASMLDE I+Y+K  QLQ++
Sbjct  289  LMQTDKASMLDEIIDYVKFLQLQVK  313


>gi|115461987|ref|NP_001054593.1|  Os05g0139100 [Oryza sativa (japonica cultivar-group)]
 gi|50511445|gb|AAT77368.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|51854388|gb|AAU10768.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
 gi|113578144|dbj|BAF16507.1|  Os05g0139100 [Oryza sativa (japonica cultivar-group)]
Length=505

 Score = 35.8 bits (81),  Expect = 0.090
 Identities = 16/22 (72%), Positives = 21/22 (95%), Gaps = 0/22 (0%)
 Frame = -3

Query  450  DKASMLDEAIEYMKSPQLQLQV  385
            DKASML+EAIEY+K+ QLQ+Q+
Sbjct  369  DKASMLEEAIEYLKTLQLQVQM  390


>gi|4218117|emb|CAA22971.1|  putative protein (fragment) [Arabidopsis thaliana]
 gi|7269736|emb|CAB81469.1|  putative protein (fragment) [Arabidopsis thaliana]
Length=864

 Score = 35.8 bits (81),  Expect = 0.090
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
 Frame = -2

Query  304  QVMWMGSGMAP-MMFPG-IQHYMSRMGIGMG----PPPL-----PSIHNPLHLSRVPVVD  158
            Q+M MG GM P MM  G  Q +M  M +GM     PPP       +   P H++ V    
Sbjct  431  QMMSMGHGMMPPMMHEGNTQQFMPHMAMGMKGMNRPPPFVPFPGKTFPRPGHMAGVGPSY  490

Query  157  QSMSMAPSQNQAATCQTQQLNQVNYQHPMQN----PTFSEQYARFLGFHHMQ  14
             ++       QA+      +  + + +P+ N    P +   Y++F+G H MQ
Sbjct  491  PALRYPFPDTQASDLSRVHVPSL-HSNPVPNQPRFPAYINPYSQFVGLHQMQ  541


>gi|15235446|ref|NP_194610.1|  transcription factor [Arabidopsis thaliana]
Length=880

 Score = 35.8 bits (81),  Expect = 0.090
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
 Frame = -2

Query  304  QVMWMGSGMAP-MMFPG-IQHYMSRMGIGMG----PPPL-----PSIHNPLHLSRVPVVD  158
            Q+M MG GM P MM  G  Q +M  M +GM     PPP       +   P H++ V    
Sbjct  447  QMMSMGHGMMPPMMHEGNTQQFMPHMAMGMKGMNRPPPFVPFPGKTFPRPGHMAGVGPSY  506

Query  157  QSMSMAPSQNQAATCQTQQLNQVNYQHPMQN----PTFSEQYARFLGFHHMQ  14
             ++       QA+      +  + + +P+ N    P +   Y++F+G H MQ
Sbjct  507  PALRYPFPDTQASDLSRVHVPSL-HSNPVPNQPRFPAYINPYSQFVGLHQMQ  557


>gi|115483366|ref|NP_001065353.1|  Os10g0556200 [Oryza sativa (japonica cultivar-group)]
 gi|14165335|gb|AAK55467.1|AC069300_22  putative DNA-binding protein [Oryza sativa (japonica cultivar-group)]
 gi|31433458|gb|AAP54971.1|  Helix-loop-helix DNA-binding domain containing protein, expressed 
[Oryza sativa (japonica cultivar-group)]
 gi|113639885|dbj|BAF27190.1|  Os10g0556200 [Oryza sativa (japonica cultivar-group)]
Length=191

 Score = 35.8 bits (81),  Expect = 0.090
 Identities = 16/24 (66%), Positives = 20/24 (83%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDE I+Y+K  Q Q+QV
Sbjct  33   KTDKASMLDEVIDYLKQLQAQVQV  56


>gi|18378953|ref|NP_563650.1|  HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / transcription 
factor [Arabidopsis thaliana]
 gi|20532238|sp|Q9FE22|HFR1_ARATH  Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced 
phytochrome signaling) (Basic helix-loop-helix FBI1 protein) 
(Basic helix-loop-helix protein 26) (bHLH 26) (AtbHLH026) 
(Reduced sensitivity to far-red light)
 gi|11870115|gb|AAG40617.1|AF324245_1  bHLH-like protein HFR1 [Arabidopsis thaliana]
 gi|12025106|gb|AAG45733.1|AF288287_1  reduced phytochrome signaling 1; basic helix-loop-helix protein 
[Arabidopsis thaliana]
 gi|13183644|gb|AAK15282.1|AF323182_1  basic helix-loop-helix FBI1 protein [Arabidopsis thaliana]
Length=292

 Score = 35.8 bits (81),  Expect = 0.090
 Identities = 16/24 (66%), Positives = 21/24 (87%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDK S+LD+ IEYMK+ QLQLQ+
Sbjct  166  KTDKVSVLDKTIEYMKNLQLQLQM  189


>gi|26449595|dbj|BAC41923.1|  putative bHLH transcription factor bHLH026 [Arabidopsis thaliana]
Length=143

 Score = 35.8 bits (81),  Expect = 0.090
 Identities = 16/24 (66%), Positives = 21/24 (87%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDK S+LD+ IEYMK+ QLQLQ+
Sbjct  17   KTDKVSVLDKTIEYMKNLQLQLQM  40


>gi|93280154|gb|ABF06705.1|  Joka8 [Nicotiana plumbaginifolia]
Length=360

 Score = 34.7 bits (78),  Expect = 0.20
 Identities = 16/24 (66%), Positives = 21/24 (87%), Gaps = 0/24 (0%)
 Frame = -3

Query  456  QTDKASMLDEAIEYMKSPQLQLQV  385
            +TDKASMLDE I+Y+K  QLQ++V
Sbjct  285  KTDKASMLDEIIDYVKFLQLQVKV  308


>gi|3522944|gb|AAC34226.1|  hypothetical protein [Arabidopsis thaliana]
Length=394

 Score = 34.7 bits (78),  Expect = 0.20
 Identities = 15/22 (68%), Positives = 21/22 (95%), Gaps = 0/22 (0%)
 Frame = -3

Query  450  DKASMLDEAIEYMKSPQLQLQV  385
            DKAS+LDEAI+YM++ QLQ+Q+
Sbjct  241  DKASLLDEAIKYMRTLQLQVQM  262
Distribution of 124 Blast Hits on the Query Sequence
