Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927997-29897-51469889518.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig60 Length=255
Score E Sequences producing significant alignments: (Bits) Value gi|108864390|gb|ABG22487.1| 40S ribosomal protein S5, putativ... 58.2 9e-09 gi|40748265|gb|AAR89617.1| 40S ribosomal protein S5 [Capsicum an 58.2 9e-09 gi|115485513|ref|NP_001067900.1| Os11g0482000 [Oryza sativa (... 58.2 9e-09 gi|21617886|gb|AAM66936.1| 40S ribosomal protein S5 [Arabidopsis 58.2 9e-09 gi|6831665|sp|O65731|RS5_CICAR 40S ribosomal protein S5 >gi|3... 58.2 9e-09 gi|6831664|sp|O24111|RS5_NICPL 40S ribosomal protein S5 >gi|1... 58.2 9e-09 gi|115433960|ref|NP_001041738.1| Os01g0100700 [Oryza sativa (... 58.2 9e-09 gi|15228111|ref|NP_181264.1| ATRPS5B (RIBOSOMAL PROTEIN 5B); ... 58.2 9e-09 gi|1362117|pir||S56705 ribosomal protein S5 homolog - common tob 58.2 9e-09 gi|15229897|ref|NP_187800.1| ATRPS5A (RIBOSOMAL PROTEIN 5A); ... 58.2 9e-09 gi|116058572|emb|CAL54279.1| Ribosomal protein S7 (ISS) [Ostreoc 57.4 1e-08 gi|28193498|emb|CAD28611.1| 40S ribosomal protein s5 [Polytomell 57.0 2e-08 gi|83582438|emb|CAJ45370.1| 40S ribosomal protein S5 [Chlamydomo 57.0 2e-08 gi|37780996|gb|AAP35042.1| putative 40S ribosomal protein S5 [Vi 55.5 6e-08 gi|121720659|ref|YP_001001580.1| ribosomal protein S7 [Nuphar... 34.3 0.13 gi|33338879|gb|AAQ14198.1| ribosomal protein S7 [Ascarina lucida 34.3 0.13 gi|45454190|gb|AAS65782.1| ribosomal protein S7 [Petermannia cir 33.9 0.17 gi|45454186|gb|AAS65779.1| ribosomal protein S7 [Wurmbea pygmaea 33.9 0.17 gi|45454151|gb|AAS65753.1| ribosomal protein S7 [Luzuriaga radic 33.9 0.17 gi|45454127|gb|AAS65735.1| ribosomal protein S7 [Doryanthes palm 33.9 0.17 gi|45454085|gb|AAS65704.1| ribosomal protein S7 [Petrosavia sp. 33.9 0.17 gi|45454131|gb|AAS65738.1| ribosomal protein S7 [Pandanus cop... 33.9 0.17 gi|45454123|gb|AAS65732.1| ribosomal protein S7 [Agapanthus afri 33.9 0.17 gi|45454108|gb|AAS65721.1| ribosomal protein S7 [Kingia australi 33.9 0.17 gi|45454147|gb|AAS65750.1| ribosomal protein S7 [Campynema linea 33.9 0.17 gi|45454163|gb|AAS65762.1| ribosomal protein S7 [Philesia mag... 33.9 0.17 gi|45454143|gb|AAS65747.1| ribosomal protein S7 [Calochortus ... 33.9 0.17 gi|45454139|gb|AAS65744.1| ribosomal protein S7 [Alstroemeria au 33.9 0.17 gi|45454159|gb|AAS65759.1| ribosomal protein S7 [Tripladenia cun 33.9 0.17 gi|45454104|gb|AAS65718.1| ribosomal protein S7 [Flagellaria ind 33.9 0.17 gi|116617153|ref|YP_817528.1| ribosomal protein S7 [Coffea ar... 33.9 0.17 gi|114804309|ref|YP_762306.1| ribosomal protein S7 [Morus ind... 33.9 0.17 gi|114330016|ref|YP_740697.1| ribosomal protein S7 [Nandina d... 33.9 0.17 gi|114329701|ref|YP_740522.1| ribosomal protein S7 [Citrus si... 33.9 0.17 gi|110227124|ref|YP_665603.1| ribosomal protein S7 [Populus a... 33.9 0.17 gi|91984038|ref|YP_567124.1| ribosomal protein S7 [Vitis vini... 33.9 0.17 gi|66865839|gb|AAY57520.1| ribosomal protein S7 [Lactuca sativa] 33.9 0.17 gi|37721265|gb|AAN32031.1| ribosomal protein S7 [Blandfordia pun 33.9 0.17 gi|37721195|gb|AAN31979.1| ribosomal protein S7 [Stemona tuberos 33.9 0.17 gi|37721289|gb|AAN32048.1| ribosomal protein S7 [Iris missourien 33.9 0.17 gi|37721215|gb|AAN31994.1| ribosomal protein S7 [Ensete ventrico 33.9 0.17 gi|37721187|gb|AAN31973.1| ribosomal protein S7 [Narthecium ossi 33.9 0.17 gi|37721183|gb|AAN31970.1| ribosomal protein S7 [Burmannia capit 33.9 0.17 gi|37721199|gb|AAN31982.1| ribosomal protein S7 [Anticlea elegan 33.9 0.17 gi|37721191|gb|AAN31976.1| ribosomal protein S7 [Japonolirion... 33.9 0.17 gi|37721235|gb|AAN32009.1| ribosomal protein S7 [Roystonea princ 33.9 0.17 gi|37721333|gb|AAN32081.1| ribosomal protein S7 [Chlorophytum co 33.9 0.17 gi|34333491|gb|AAQ64532.1| ribosomal protein S7 [Mahonia aquifol 33.9 0.17 gi|34333512|gb|AAQ64548.1| ribosomal protein S7 [Hernandia pelta 33.9 0.17 gi|34333542|gb|AAQ64570.1| ribosomal protein S7 [Pittosporum ver 33.9 0.17 gi|115605068|ref|YP_784520.1| ribosomal protein S7 [Piper cen... 33.9 0.17 gi|33338887|gb|AAQ14204.1| ribosomal protein S7 [Chloranthus jap 33.9 0.17 gi|52220856|ref|YP_087012.1| ribosomal protein S7 [Panax gins... 33.9 0.17 gi|62287228|sp|Q67IL8|RR7_ANACO Chloroplast 30S ribosomal pro... 33.9 0.17 gi|62287224|sp|Q67IC5|RR7_ASPOF Chloroplast 30S ribosomal pro... 33.9 0.17 gi|68052921|sp|Q67ID1|RR7_ALLTE Chloroplast 30S ribosomal pro... 33.9 0.17 gi|62287226|sp|Q67IG9|RR7_COECR Chloroplast 30S ribosomal pro... 33.9 0.17 gi|62287247|sp|Q6EM99|RR7_EUOAL Chloroplast 30S ribosomal pro... 33.9 0.17 gi|62287248|sp|Q6EMA2|RR7_CORMA Chloroplast 30S ribosomal pro... 33.9 0.17 gi|62287243|sp|Q6EM77|RR7_PHYAM Chloroplast 30S ribosomal pro... 33.9 0.17 gi|62287249|sp|Q6EMA4|RR7_CANWI Chloroplast 30S ribosomal pro... 33.9 0.17 gi|62287241|sp|Q6EM62|RR7_SARHE Chloroplast 30S ribosomal pro... 33.9 0.17 gi|62287174|sp|Q6KGX3|RR7_PEA Chloroplast 30S ribosomal prote... 33.9 0.17 gi|62287291|sp|Q71T50|RR7_HYDCA Chloroplast 30S ribosomal pro... 33.9 0.17 gi|62287272|sp|Q6KGW4|RR7_SCHCH Chloroplast 30S ribosomal pro... 33.9 0.17 gi|24638194|sp|Q9GFL8|RR7_DIOBU Chloroplast 30S ribosomal pro... 33.9 0.17 gi|24638192|sp|Q9GFK3|RR7_SAUCE Chloroplast 30S ribosomal pro... 33.9 0.17 gi|17367690|sp|Q9GFM9|RR7_CABCA Chloroplast 30S ribosomal pro... 33.9 0.17 gi|17367679|sp|Q9GFK0|RR7_TROAR Chloroplast 30S ribosomal pro... 33.9 0.17 gi|114107092|ref|YP_740248.1| ribosomal protein S7 [Liriodend... 33.9 0.17 gi|17367684|sp|Q9GFM3|RR7_CERDE Chloroplast 30S ribosomal pro... 33.9 0.17 gi|82754670|gb|ABB90084.1| ribosomal protein S7 [Solanum tube... 33.9 0.17 gi|78103294|ref|YP_358630.1| ribosomal protein S7 [Phalaenops... 33.9 0.17 gi|108802686|ref|YP_636344.1| ribosomal protein S7 [Eucalyptu... 33.9 0.17 gi|62287227|sp|Q67II8|RR7_TYPAN Chloroplast 30S ribosomal pro... 33.9 0.17 gi|62287274|sp|Q6KGX6|RR7_MAGST Chloroplast 30S ribosomal pro... 33.9 0.17 gi|68164849|ref|YP_247645.1| ribosomal protein S7 [Cucumis sa... 33.9 0.17 gi|68052866|sp|Q589A4|RR7_SILLA Chloroplast 30S ribosomal pro... 33.9 0.17 gi|7525079|ref|NP_051104.1| ribosomal protein S7 [Arabidopsis... 33.9 0.17 gi|9838363|ref|NP_063975.1| orf155a [Beta vulgaris subsp. vul... 33.9 0.17 gi|464722|sp|P34832|RR7_CUSRE Plastid 30S ribosomal protein S... 33.9 0.17 gi|91214185|ref|YP_538809.1| ribosomal protein S7 [Glycine ma... 33.9 0.17 gi|13518482|ref|NP_084841.1| ribosomal protein S7 [Lotus corn... 33.9 0.17 gi|11466006|ref|NP_054548.1| ribosomal protein S7 [Nicotiana ... 33.9 0.17 gi|32480889|ref|NP_862800.1| ribosomal protein S7 [Calycanthu... 33.9 0.17 gi|33338914|gb|AAQ14224.1| ribosomal protein S7 [Rheum x cultoru 33.5 0.23 gi|62287246|sp|Q6EM90|RR7_HOUCO Chloroplast 30S ribosomal pro... 33.5 0.23 gi|11497570|ref|NP_054978.1| ribosomal protein S7 [Spinacia o... 33.5 0.23 gi|62287245|sp|Q6EM87|RR7_HYDMC Chloroplast 30S ribosomal pro... 33.1 0.30 gi|34500960|ref|NP_904145.1| ribosomal protein S7 [Amborella ... 33.1 0.30 gi|45454182|gb|AAS65776.1| ribosomal protein S7 [Trillium grandi 32.7 0.39 gi|56236527|gb|AAV84620.1| ribosomal protein S7 [Abies lasioc... 32.7 0.39 gi|37721179|gb|AAN31967.1| ribosomal protein S7 [Tofieldia gluti 32.7 0.39 gi|37721175|gb|AAN31964.1| ribosomal protein S7 [Scheuchzeria... 32.7 0.39 gi|34333550|gb|AAQ64576.1| ribosomal protein S7 [Ribes aureum] 32.7 0.39 gi|62287229|sp|Q67IP2|RR7_BUTUM Chloroplast 30S ribosomal pro... 32.7 0.39 gi|62287289|sp|Q71L33|RR7_CYCRE Chloroplast 30S ribosomal pro... 32.7 0.39 gi|68052959|sp|Q6KGV8|RR7_SPAWA Chloroplast 30S ribosomal pro... 32.7 0.39 gi|29565690|ref|NP_817291.1| ribosomal protein S7 [Pinus kora... 32.7 0.39 gi|75755705|ref|YP_319809.1| ribosomal protein S7 [Acorus cal... 32.7 0.39
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 132 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 255 Length of database: 101054579 Length adjustment: 56 Effective length of query: 199 Effective length of database: 85187035 Effective search space: 2470424015 Effective search space used: 2470424015 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)
