Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168928247-14472-52925160137.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig72 Length=613
Related Structures Score E Sequences producing significant alignments: (Bits) Value gi|19896|emb|CAA41713.1| photosystem II 23 kDa polypeptide [Nico 287 2e-77 gi|52000814|sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer pr... 287 2e-77 gi|1345550|emb|CAA44292.1| 23-kDa ploypeptide of photosystem ... 281 1e-75 gi|131393|sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer prot... 281 1e-75 gi|131390|sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein... 279 6e-75 gi|417604|emb|CAA45699.1| 23 kDa polypeptide of water-oxidizi... 276 5e-74 gi|11134156|sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer pro... 275 9e-74 gi|19898|emb|CAA41712.1| photosystem II 23 kDa polypeptide [Nico 275 1e-73 gi|84468376|dbj|BAE71271.1| putative PSII-P protein [Trifolium p 273 4e-73 gi|131392|sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer prote... 273 4e-73 gi|52000782|sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer pr... 273 4e-73 gi|15222166|ref|NP_172153.1| PSBP (OXYGEN-EVOLVING ENHANCER P... 273 5e-73 gi|11134035|sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer pro... 266 6e-71 gi|11133884|sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer pro... 265 1e-70 gi|61697113|gb|AAX53162.1| chloroplast photosynthetic oxygen-... 264 2e-70 gi|266856|sp|P29795|PSBP_LYCES Oxygen-evolving enhancer prote... 261 2e-69 gi|25992740|gb|AAN77240.1| PsbP [Xerophyta humilis] 259 5e-69 gi|11134051|sp|Q40407|PSBP_NARPS Oxygen-evolving enhancer pro... 259 7e-69 gi|131391|sp|P11594|PSBP_SINAL Oxygen-evolving enhancer prote... 255 8e-68 gi|11133887|sp|O49344|PSBP2_ARATH Oxygen-evolving enhancer pr... 255 8e-68 gi|115470529|ref|NP_001058863.1| Os07g0141400 [Oryza sativa (... 246 6e-65 gi|829289|emb|CAA68801.1| 23 kD subunit [Sinapis alba] >gi|22... 243 5e-64 gi|11134091|sp|Q96334|PSBP_BRAJU Oxygen-evolving enhancer pro... 241 2e-63 gi|396261|emb|CAA45700.1| 23 kDa polypeptide of water-oxidizi... 233 5e-61 gi|20003|emb|CAA44291.1| 23-dDa polypeptide of Photosystem II... 228 1e-59 gi|131394|sp|Q00434|PSBP_WHEAT Oxygen-evolving enhancer prote... 228 1e-59 gi|25299018|pir||G84712 hypothetical protein At2g30790 [impor... 228 1e-59 gi|42569485|ref|NP_180637.2| calcium ion binding [Arabidopsis th 228 2e-59 gi|2570499|gb|AAB82135.1| 23kDa polypeptide of photosystem II [O 223 6e-58 gi|1398999|dbj|BAA08564.1| 23 kDa polypeptide of photosystem ... 218 1e-56 gi|8131593|dbj|BAA96364.1| oxygen evolving enhancer protein 2 [B 190 4e-48 gi|49259454|pdb|1V2B|A Chain A, Crystal Structure Of Psbp Pro... 187 3e-47 gi|131389|sp|P11471|PSBP_CHLRE Oxygen-evolving enhancer prote... 164 3e-40 gi|117661844|gb|ABK55671.1| chloroplast photosystem II oxygen... 160 4e-39 gi|51969618|dbj|BAD43501.1| putative photosystem II oxygen-ev... 97.8 3e-20 gi|47028248|gb|AAT09057.1| oxygen-evolving complex [Beta vulgari 75.5 1e-13 gi|37903240|gb|AAP48993.1| probable oxygen-evolving enhancer ... 43.5 6e-04 gi|115476026|ref|NP_001061609.1| Os08g0347500 [Oryza sativa (... 40.4 0.005 gi|15233245|ref|NP_191093.1| calcium ion binding [Arabidopsis... 39.3 0.011 gi|116058789|emb|CAL54496.1| unnamed protein product [Ostreococc 38.9 0.015 gi|110289196|gb|ABG66117.1| PsbP family protein, expressed [O... 37.4 0.043 gi|115482366|ref|NP_001064776.1| Os10g0461100 [Oryza sativa (... 37.4 0.043 gi|110289199|gb|AAP54144.2| PsbP family protein, expressed [O... 37.4 0.043 gi|110289198|gb|ABG66119.1| PsbP family protein, expressed [O... 37.4 0.043 gi|110289197|gb|ABG66118.1| PsbP family protein, expressed [O... 37.4 0.043 gi|92869651|gb|ABE79267.1| conserved hypothetical protein [Medic 37.4 0.043 gi|74272685|gb|ABA01138.1| chloroplast oxygen-evolving comple... 37.4 0.043 gi|22165105|gb|AAM93722.1| putative oxygen evolving complex p... 37.4 0.043 gi|81477|pir||C24166 photosystem II extrinsic membrane protein - 36.6 0.073 gi|20198164|gb|AAM15436.1| hypothetical protein [Arabidopsis tha 36.2 0.096 gi|30683953|ref|NP_850123.1| unknown protein [Arabidopsis tha... 36.2 0.096 gi|116310283|emb|CAH67302.1| OSIGBa0102D10.5 [Oryza sativa (indi 33.5 0.62 gi|116000550|emb|CAL50230.1| unnamed protein product [Ostreococc 32.7 1.1 gi|115458490|ref|NP_001052845.1| Os04g0434900 [Oryza sativa (... 31.6 2.4 gi|21927721|gb|AAM78340.1| NADPH HC toxin reductase [Zea mays su 31.2 3.1 gi|72384441|gb|AAZ67557.1| 52O08_11 [Brassica rapa subsp. pekine 31.2 3.1 gi|2911364|gb|AAC04336.1| NADPH HC toxin reductase [Zea mays] 30.8 4.0 gi|1076373|pir||PA0013 photosystem II oxygen-evolving complex... 30.8 4.0 gi|320590|pir||G44957 photosystem II oxygen-evolving complex ... 30.8 4.0 gi|4455273|emb|CAB36809.1| subtilisin proteinase-like [Arabid... 30.4 5.2 gi|16649029|gb|AAL24366.1| subtilisin proteinase-like [Arabid... 30.4 5.2 gi|30685518|ref|NP_567633.2| peptidase/ subtilase [Arabidopsi... 30.4 5.2 gi|108862580|gb|ABG21998.1| hypothetical protein LOC_Os12g238... 30.0 6.8 gi|7270560|emb|CAB81517.1| ATM-like protein [Arabidopsis thalian 30.0 6.8 gi|3036812|emb|CAA18502.1| ATM-like protein [Arabidopsis thalian 30.0 6.8 gi|21927719|gb|AAM78339.1| NADPH HC toxin reductase [Zea mays su 30.0 6.8 gi|92868445|gb|ABE78450.1| hypothetical protein MtrDRAFT_AC12... 29.6 8.9 gi|22328400|ref|NP_567317.2| nucleotide binding [Arabidopsis ... 29.6 8.9 gi|115472149|ref|NP_001059673.1| Os07g0490300 [Oryza sativa (... 29.6 8.9 gi|5732049|gb|AAD48948.1|AF147262_11 contains similarity to P... 29.6 8.9
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 398 Number of extensions: 3 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 613 Length of database: 101054579 Length adjustment: 108 Effective length of query: 505 Effective length of database: 70452887 Effective search space: 6763477152 Effective search space used: 6763477152 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 65 (29.6 bits)