RID=1168928768-2355-179084422999.BLASTQ1, Contig85

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168928768-2355-179084422999.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig85
Length=688

Distribution of 18 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|15230931|ref|NP_189221.1|  RPL15 [Arabidopsis thaliana] >gi...   260    3e-69 
gi|388448|emb|CAA77592.1|  plastid ribosomal protein CL15 [Arabid   257    3e-68 
gi|16497|emb|CAA77593.1|  Plastid ribosomal protein CL15 [Arabido   257    3e-68
gi|400986|sp|P31165|RK15_PEA  50S ribosomal protein L15, chlor...   251    2e-66
gi|115451609|ref|NP_001049405.1|  Os03g0219900 [Oryza sativa (...   239    7e-63 
gi|116055984|emb|CAL58517.1|  Mitochondrial/chloroplast riboso...   162    1e-39
gi|83584317|gb|ABC24933.1|  plastid 50S ribosomal protein L15 [Pr   138    2e-32
gi|280375|pir||S15817  ribosomal protein L15, chloroplast - spina  79.3    1e-14
gi|62318707|dbj|BAD93719.1|  50S ribosomal protein L15, chloro...  75.9    1e-13 
gi|53801476|gb|AAU93940.1|  plastid 50S ribosomal protein L15 ...  71.6    3e-12
gi|116055894|emb|CAL57979.1|  Mitochondrial/chloroplast riboso...  61.2    3e-09
gi|115475832|ref|NP_001061512.1|  Os08g0310100 [Oryza sativa (...  55.5    2e-07 
gi|15237756|ref|NP_201272.1|  structural constituent of riboso...  54.7    3e-07 
gi|48429073|sp||P22798_2  [Segment 2 of 5] 50S ribosomal protein   40.8    0.005
gi|115448755|ref|NP_001048157.1|  Os02g0754700 [Oryza sativa (...  32.7    1.3   
gi|48429075|sp||P22798_4  [Segment 4 of 5] 50S ribosomal protein   32.3    1.7  
gi|115450943|ref|NP_001049072.1|  Os03g0166000 [Oryza sativa (...  32.0    2.2   
gi|116060618|emb|CAL55954.1|  Histidyl-tRNA synthetase (ISS) [Ost  31.6    2.9

Alignments

 

>gi|15230931|ref|NP_189221.1|  RPL15 [Arabidopsis thaliana]
 gi|21431836|sp|P25873|RK15_ARATH  50S ribosomal protein L15, chloroplast precursor (CL15)
 gi|13877945|gb|AAK44050.1|AF370235_1  putative 50S ribosomal protein L15, chloroplast precursor [Arabidopsis 
thaliana]
 gi|15983454|gb|AAL11595.1|AF424601_1  AT3g25920/MPE11_7 [Arabidopsis thaliana]
 gi|9279597|dbj|BAB01055.1|  chloroplast 50S ribosomal protein L15 [Arabidopsis thaliana]
 gi|16323474|gb|AAL15231.1|  putative 50S ribosomal protein L15, chloroplast precursor [Arabidopsis 
thaliana]
 gi|21536722|gb|AAM61054.1|  50S ribosomal protein L15, chloroplast precursor [Arabidopsis 
thaliana]
Length=277

 Score =  260 bits (665),  Expect = 3e-69
 Identities = 125/145 (86%), Positives = 135/145 (93%), Gaps = 0/145 (0%)
 Frame = -1

Query  505  GQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYIPVNLKD  326
            GQG SCGFGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KD
Sbjct  106  GQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKD  165

Query  325  IETAGFQEGDEVSLETLKEKGLINPSGRERKLPLKILGDGELNLKLKLKARAFSASAKEK  146
            IETAGFQEGDEVSLETLK+KGLINPSGRERKLPLKILG GEL++KL  KARAFS  AKEK
Sbjct  166  IETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEK  225

Query  145  LEASGCSLTVLPGRKKWVKPSVAKN  71
            LEASGC+LTVLPGRKKWVKPSVAKN
Sbjct  226  LEASGCTLTVLPGRKKWVKPSVAKN  250


>gi|388448|emb|CAA77592.1|  plastid ribosomal protein CL15 [Arabidopsis thaliana]
Length=273

 Score =  257 bits (657),  Expect = 3e-68
 Identities = 124/145 (85%), Positives = 134/145 (92%), Gaps = 0/145 (0%)
 Frame = -1

Query  505  GQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYIPVNLKD  326
            GQG SCGFGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KD
Sbjct  102  GQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKD  161

Query  325  IETAGFQEGDEVSLETLKEKGLINPSGRERKLPLKILGDGELNLKLKLKARAFSASAKEK  146
            IETAGFQEGDEVSLETLK+KGLINPSGRERKLPLKILG GEL++KL  KARAFS  AKEK
Sbjct  162  IETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEK  221

Query  145  LEASGCSLTVLPGRKKWVKPSVAKN  71
            LEASGC+LTVLP RKKWVKPSVAKN
Sbjct  222  LEASGCTLTVLPERKKWVKPSVAKN  246


>gi|16497|emb|CAA77593.1|  Plastid ribosomal protein CL15 [Arabidopsis thaliana]
Length=277

 Score =  257 bits (657),  Expect = 3e-68
 Identities = 124/145 (85%), Positives = 134/145 (92%), Gaps = 0/145 (0%)
 Frame = -1

Query  505  GQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYIPVNLKD  326
            GQG SCGFGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KD
Sbjct  106  GQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKD  165

Query  325  IETAGFQEGDEVSLETLKEKGLINPSGRERKLPLKILGDGELNLKLKLKARAFSASAKEK  146
            IETAGFQEGDEVSLETLK+KGLINPSGRERKLPLKILG GEL++KL  KARAFS  AKEK
Sbjct  166  IETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEK  225

Query  145  LEASGCSLTVLPGRKKWVKPSVAKN  71
            LEASGC+LTVLP RKKWVKPSVAKN
Sbjct  226  LEASGCTLTVLPERKKWVKPSVAKN  250


>gi|400986|sp|P31165|RK15_PEA  50S ribosomal protein L15, chloroplast precursor (CL15)
 gi|20867|emb|CAA77595.1|  Plastid ribosomal protein CL15 [Pisum sativum]
Length=258

 Score =  251 bits (640),  Expect = 2e-66
 Identities = 122/146 (83%), Positives = 132/146 (90%), Gaps = 0/146 (0%)
 Frame = -1

Query  505  GQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYIPVNLKD  326
            GQG SCGFGMRGQKSRSGPG+ +GFEGGQMPLYRR+PKLRGIAGGMHAGLPKY+ VNL D
Sbjct  91   GQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTD  150

Query  325  IETAGFQEGDEVSLETLKEKGLINPSGRERKLPLKILGDGELNLKLKLKARAFSASAKEK  146
            IE AGFQ+G+EVSLETLK K +INPSGRERKLPLKIL DGEL+ KL +KA AFS SAKEK
Sbjct  151  IENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEK  210

Query  145  LEASGCSLTVLPGRKKWVKPSVAKNL  68
            LE +GCSL VLPGRKKWVKPSVAKNL
Sbjct  211  LEYAGCSLIVLPGRKKWVKPSVAKNL  236


>gi|115451609|ref|NP_001049405.1|  Os03g0219900 [Oryza sativa (japonica cultivar-group)]
 gi|108706890|gb|ABF94685.1|  50S ribosomal protein L15, chloroplast precursor, putative, expressed 
[Oryza sativa (japonica cultivar-group)]
 gi|113547876|dbj|BAF11319.1|  Os03g0219900 [Oryza sativa (japonica cultivar-group)]
Length=263

 Score =  239 bits (610),  Expect = 7e-63
 Identities = 111/145 (76%), Positives = 131/145 (90%), Gaps = 0/145 (0%)
 Frame = -1

Query  505  GQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYIPVNLKD  326
            GQG SCGFGMRGQKSRSGPGVR+GFEGGQMPLYRRIPKLRGIAGGMH GLPKY+P NL+D
Sbjct  96   GQGASCGFGMRGQKSRSGPGVRRGFEGGQMPLYRRIPKLRGIAGGMHIGLPKYVPFNLRD  155

Query  325  IETAGFQEGDEVSLETLKEKGLINPSGRERKLPLKILGDGELNLKLKLKARAFSASAKEK  146
            +   GF++GDE+SLE+LK +GLINPSGRERKLPLKILGDG++++KL +KA AFSASAKEK
Sbjct  156  LARGGFKDGDEISLESLKSRGLINPSGRERKLPLKILGDGDVSVKLNIKAGAFSASAKEK  215

Query  145  LEASGCSLTVLPGRKKWVKPSVAKN  71
            LEA+GC+L+++P RKKW+  S  KN
Sbjct  216  LEAAGCTLSLVPKRKKWLPQSYLKN  240


>gi|116055984|emb|CAL58517.1|  Mitochondrial/chloroplast ribosomal protein L15/L10 (ISS) [Ostreococcus 
tauri]
Length=216

 Score =  162 bits (410),  Expect = 1e-39
 Identities = 81/147 (55%), Positives = 103/147 (70%), Gaps = 4/147 (2%)
 Frame = -1

Query  505  GQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYIPVNLKD  326
            GQGGSCG GMRGQ +RSG G R GFEGGQ P++RR PKL+GIAGGM AG PK++ VN+ D
Sbjct  67   GQGGSCGDGMRGQNARSGKGTRTGFEGGQTPMFRRFPKLKGIAGGMGAGRPKFLTVNIGD  126

Query  325  IETA----GFQEGDEVSLETLKEKGLINPSGRERKLPLKILGDGELNLKLKLKARAFSAS  158
            +E A          E+S+ETLK  G+I  +G  R LPLK+LG+GEL   LK+KA AFS S
Sbjct  127  LEAAVVANKIDASAEISIETLKSAGIIKATGYYRDLPLKVLGEGELTNGLKVKAHAFSQS  186

Query  157  AKEKLEASGCSLTVLPGRKKWVKPSVA  77
            A EKL  +G +  V+P ++KW + + A
Sbjct  187  AAEKLAGAGGAAEVIPAKEKWSREAAA  213


>gi|83584317|gb|ABC24933.1|  plastid 50S ribosomal protein L15 [Prototheca wickerhamii]
Length=190

 Score =  138 bits (348),  Expect = 2e-32
 Identities = 71/115 (61%), Positives = 85/115 (73%), Gaps = 3/115 (2%)
 Frame = -1

Query  502  QGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYIPVNLKDI  323
            QGGS GFGMRGQKSRSG G+R GFEGGQ PLYRR+PKL+GIAGGM AGLP Y+  N+  +
Sbjct  79   QGGSAGFGMRGQKSRSGSGIRPGFEGGQTPLYRRLPKLKGIAGGMGAGLPDYVIFNVGPV  138

Query  322  ETAGFQEGDEVSLETLKEKGLINPSGRERKLPLKILGDGELNLKLKLKARAFSAS  158
                   G EVSLETL+   +I PSGRE ++PLKILG+G+L+     +A AFS S
Sbjct  139  P---LSPGMEVSLETLRSARIIKPSGREARVPLKILGNGKLSEPRTYRAAAFSES  190


>gi|280375|pir||S15817  ribosomal protein L15, chloroplast - spinach (fragments)
Length=93

 Score = 79.3 bits (194),  Expect = 1e-14
 Identities = 43/83 (51%), Positives = 50/83 (60%), Gaps = 28/83 (33%)
 Frame = -1

Query  463  SRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYIPVNLKDIETAGFQEGDEVSL  284
            SRSGPG+ +GFEGGQMPLYR  P               Y+P+NL+DIE AGF        
Sbjct  30   SRSGPGIMRGFEGGQMPLYRXXP---------------YVPINLRDIEVAGF--------  66

Query  283  ETLKEKGLINPSGRERKLPLKIL  215
                 KG+INPSGRER+LPLK L
Sbjct  67   -----KGIINPSGRERRLPLKNL  84


>gi|62318707|dbj|BAD93719.1|  50S ribosomal protein L15, chloroplast precursor [Arabidopsis 
thaliana]
Length=69

 Score = 75.9 bits (185),  Expect = 1e-13
 Identities = 36/42 (85%), Positives = 38/42 (90%), Gaps = 0/42 (0%)
 Frame = -1

Query  196  LKLKLKARAFSASAKEKLEASGCSLTVLPGRKKWVKPSVAKN  71
            +KL  KARAFS  AKEKLEASGC+LTVLPGRKKWVKPSVAKN
Sbjct  1    MKLTFKARAFSTQAKEKLEASGCTLTVLPGRKKWVKPSVAKN  42


>gi|53801476|gb|AAU93940.1|  plastid 50S ribosomal protein L15 [Helicosporidium sp. ex Simulium 
jonesii]
Length=111

 Score = 71.6 bits (174),  Expect = 3e-12
 Identities = 38/95 (40%), Positives = 62/95 (65%), Gaps = 3/95 (3%)
 Frame = -1

Query  373  GMHAGLPKYIPVNLKDIETAGFQEGDEVSLETLKEKGLINPSGRERKLPLKILGDGELNL  194
            GM+A   K++ VNL  +  A F   + +++E LK  G+I+ +G ER LPLK+LG+GEL  
Sbjct  7    GMNAA-QKFVAVNLSQL--ARFAPHERITIEMLKHVGVIHATGSERNLPLKVLGNGELAH  63

Query  193  KLKLKARAFSASAKEKLEASGCSLTVLPGRKKWVK  89
             L + A + S++A+ K+EA+G ++  LP + KW +
Sbjct  64   PLTIVAASVSSAARAKIEAAGGTVVDLPAKVKWTR  98


>gi|116055894|emb|CAL57979.1|  Mitochondrial/chloroplast ribosomal protein L15/L10 (ISS) [Ostreococcus 
tauri]
Length=355

 Score = 61.2 bits (147),  Expect = 3e-09
 Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
 Frame = -1

Query  505  GQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYIPVNL--  332
            G+G + G G +G KSRSG G R GFEGGQ PL   +PK     G  +     +  VNL  
Sbjct  169  GKGKTSGRGHKGAKSRSGGGPRLGFEGGQTPLRLTLPK----RGAHNPHRMTFDVVNLAT  224

Query  331  --KDIETAGFQEGDEVSLETLKEKGLINP--SGRERKLPLKILGDG----ELNLKLKLKA  176
              + +E   F E D  +  TL  K  ++   S ++ K  +K+L  G    E  +K++L+ 
Sbjct  225  LREYVEAGRFGEYDGDNPRTLTMKDFVDAGLSNKKIKHGIKLLAGGVDADEAFIKVRLEV  284

Query  175  RAFSASAKEKLEASGCSLT  119
               S  AKE +E +G S+T
Sbjct  285  SRASTKAKEIVERAGGSVT  303


>gi|115475832|ref|NP_001061512.1|  Os08g0310100 [Oryza sativa (japonica cultivar-group)]
 gi|34015188|gb|AAQ56383.1|  putative ribosomal protein L15 [Oryza sativa (japonica cultivar-group)]
 gi|50508079|dbj|BAD32079.1|  putative LSU ribosomal protein L15P [Oryza sativa (japonica cultivar-group)]
 gi|113623481|dbj|BAF23426.1|  Os08g0310100 [Oryza sativa (japonica cultivar-group)]
Length=295

 Score = 55.5 bits (132),  Expect = 2e-07
 Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
 Frame = -1

Query  505  GQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL-PKYIPVNLK  329
            G+G + G G +GQK+R     R GFEGGQ PL RR+P+ RG          P  +    K
Sbjct  98   GKGKTAGRGHKGQKARGT--ARFGFEGGQTPLRRRLPR-RGFKNRFSLTFQPCGLGKIAK  154

Query  328  DIETAGFQEGDEVSLETLKEKGLINPSGRERKLPLKILGDG--ELNLKLKLKARAFSASA  155
             I        + ++++TLK+ G I   G++ K  ++++G G  E+   + L+    +A A
Sbjct  155  LINAGKIDSSELITMKTLKDTGAI---GKQIKDGIRLMGRGAEEIKWPIHLEVSRTTARA  211

Query  154  KEKLEASG  131
            K  +EA+G
Sbjct  212  KAAVEAAG  219


>gi|15237756|ref|NP_201272.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|10178070|dbj|BAB11434.1|  unnamed protein product [Arabidopsis thaliana]
 gi|19698999|gb|AAL91235.1|  unknown protein [Arabidopsis thaliana]
 gi|21553371|gb|AAM62464.1|  unknown [Arabidopsis thaliana]
 gi|22136330|gb|AAM91243.1|  unknown protein [Arabidopsis thaliana]
Length=281

 Score = 54.7 bits (130),  Expect = 3e-07
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 15/134 (11%)
 Frame = -1

Query  505  GQGGSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYIPVNL--  332
            G+G + G G +GQK+R    ++ GFEGGQ PL RR+PK RG           + PV L  
Sbjct  88   GKGKTAGRGHKGQKARGT--MKFGFEGGQTPLRRRLPK-RGFKNKFKL---HFQPVGLGK  141

Query  331  --KDIETAGFQEGDEVSLETLKEKGLINPSGRERKLPLKILGDGELNLK--LKLKARAFS  164
              K I        + ++++TLK+ G I   G++ +  ++++G G  ++K  L  +    +
Sbjct  142  IAKLINAGKIDSHELITMKTLKDVGAI---GKQIEDGVRLMGRGADDIKWPLHFEVSRVT  198

Query  163  ASAKEKLEASGCSL  122
              AKE +EA+G S+
Sbjct  199  VRAKEVVEAAGGSV  212


>gi|48429073|sp||P22798_2  [Segment 2 of 5] 50S ribosomal protein L15, chloroplast (CL15)
Length=21

 Score = 40.8 bits (94),  Expect = 0.005
 Identities = 16/21 (76%), Positives = 18/21 (85%), Gaps = 0/21 (0%)
 Frame = -1

Query  457  SGPGVRKGFEGGQMPLYRRIP  395
            SGPG+ +GFEGGQMPLYR  P
Sbjct  1    SGPGIMRGFEGGQMPLYRXXP  21


>gi|115448755|ref|NP_001048157.1|  Os02g0754700 [Oryza sativa (japonica cultivar-group)]
 gi|46805948|dbj|BAD17242.1|  putative histidine-tRNA ligase [Oryza sativa (japonica cultivar-group)]
 gi|113537688|dbj|BAF10071.1|  Os02g0754700 [Oryza sativa (japonica cultivar-group)]
Length=487

 Score = 32.7 bits (73),  Expect = 1.3
 Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
 Frame = -1

Query  409  YRRIPKLRGIAGGMHAGLPKYIPVNLKDIETAGFQEGDEVSLETLKEKGLINPSGRERKL  230
            + R  KLR I GG             +DI   GF  GD V +E LKEKGL+    R+   
Sbjct  347  FDRDGKLRAICGGGRYDR-LLSTFGSEDIPACGFGFGDAVIVELLKEKGLLPDLSRQ---  402

Query  229  PLKILGDGELNLKLKLKARAFSASAKEKLEASGCSLTVLPGRKKWV  92
                + D    L  +L+  A S ++  + +     L V   R KWV
Sbjct  403  ----IDDIVFPLDEELEGPACSVASSLRRQGRSVDL-VEDKRLKWV  443


>gi|48429075|sp||P22798_4  [Segment 4 of 5] 50S ribosomal protein L15, chloroplast (CL15)
Length=15

 Score = 32.3 bits (72),  Expect = 1.7
 Identities = 13/15 (86%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
 Frame = -1

Query  265  GLINPSGRERKLPLK  221
            G+INPSGRER+LPLK
Sbjct  1    GIINPSGRERRLPLK  15


>gi|115450943|ref|NP_001049072.1|  Os03g0166000 [Oryza sativa (japonica cultivar-group)]
 gi|108706359|gb|ABF94154.1|  expressed protein [Oryza sativa (japonica cultivar-group)]
 gi|113547543|dbj|BAF10986.1|  Os03g0166000 [Oryza sativa (japonica cultivar-group)]
Length=309

 Score = 32.0 bits (71),  Expect = 2.2
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query  505  GQG-GSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGG  371
            G+G G+ G+G  G   RSGP   +G  GG  P  R   + RG  GG
Sbjct  255  GRGRGNWGYGGPGGYERSGPAYERGGRGGGSPGGRGYARGRGRMGG  300


>gi|116060618|emb|CAL55954.1|  Histidyl-tRNA synthetase (ISS) [Ostreococcus tauri]
Length=518

 Score = 31.6 bits (70),  Expect = 2.9
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
 Frame = -1

Query  433  FEGGQMPLYRRIPKLRGIAGGMHAGLPKYIPVNLKDIETAGFQEGDEVSLETLKEKGLIN  254
            FEG     + R  +LR I GG        +   + ++   GF  GD V +E LKEKGL+ 
Sbjct  341  FEG-----FDRAGELRAICGGGRYDKLLSLYGAMSEVPACGFGFGDCVIVELLKEKGLVP  395

Query  253  PSGRERKLPLKILGDGELNLKLKLKARAFSASA  155
               +  +  +    +G     +K  A   S  A
Sbjct  396  VLPKSIEFVVAAFNEGMQGKAMKAAALIRSGGA  428

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 434
Number of extensions: 10
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 688
Length of database: 101054579
Length adjustment: 109
Effective length of query: 579
Effective length of database: 70169538
Effective search space: 8420344560
Effective search space used: 8420344560
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 66 (30.0 bits)