Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168924792-28590-6105483057.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig5 Length=761
Score E Sequences producing significant alignments: (Bits) Value gi|115444081|ref|NP_001045820.1| Os02g0135800 [Oryza sativa (... 179 3e-53 gi|15227692|ref|NP_180566.1| nucleotide binding [Arabidopsis ... 184 3e-46 gi|15232095|ref|NP_186783.1| nucleotide binding [Arabidopsis ... 180 6e-45 gi|21593146|gb|AAM65095.1| putative protein transport protein SE 179 1e-44 gi|21593236|gb|AAM65185.1| transport protein SEC13, putative [Ar 171 3e-42 gi|115471371|ref|NP_001059284.1| Os07g0246300 [Oryza sativa (... 153 5e-41 gi|115456393|ref|NP_001051797.1| Os03g0831800 [Oryza sativa (... 151 5e-40 gi|83283979|gb|ABC01897.1| protein transport SEC13-like protein 161 2e-39 gi|116060615|emb|CAL55951.1| Vesicle coat complex COPII, subu... 137 2e-33 gi|7595350|gb|AAF64424.1|AF206628_1 sec13-like protein [Cucumis 137 6e-32 gi|18408028|ref|NP_564830.1| SEH1H (seh1 homolog); nucleotide... 56.6 1e-07 gi|21593083|gb|AAM65032.1| seh1-like protein [Arabidopsis thalia 56.6 1e-07 gi|12584926|gb|AAG59882.1|AF325901_1 seh1-like protein [Arabidop 56.6 1e-07 gi|115438635|ref|NP_001043597.1| Os01g0620100 [Oryza sativa (... 50.4 7e-06 gi|12323471|gb|AAG51710.1|AC066689_9 unknown protein; 62092-5668 43.1 0.001 gi|115471407|ref|NP_001059302.1| Os07g0252000 [Oryza sativa (... 42.7 0.001 gi|15229130|ref|NP_189852.1| nucleotide binding [Arabidopsis ... 41.2 0.004 gi|116054964|emb|CAL57041.1| Beta-transducin family (WD-40 re... 40.8 0.006 gi|92867667|gb|ABE77850.1| WD40-like [Medicago truncatula] 40.0 0.010 gi|15229987|ref|NP_190039.1| nucleotide binding [Arabidopsis ... 32.7 0.018 gi|46562016|gb|AAT01224.1| katanin p80 subunit PF15p [Chlamydomo 38.9 0.022 gi|79323100|ref|NP_001031421.1| EMB1345; nucleotide binding [Ara 38.5 0.028 gi|18401018|ref|NP_565615.1| EMB1345; nucleotide binding [Ara... 38.5 0.028 gi|116060131|emb|CAL56190.1| Beta-transducin family (WD-40 re... 38.1 0.037 gi|3688180|emb|CAA21208.1| putative protein [Arabidopsis thal... 38.1 0.037 gi|62997477|gb|AAY24681.1| HIRA [Zea mays] 29.6 0.039 gi|22329107|ref|NP_195025.2| nucleotide binding [Arabidopsis tha 37.7 0.048 gi|92885109|gb|ABE87629.1| WD40-like [Medicago truncatula] 37.4 0.063 gi|116055740|emb|CAL57825.1| WD40 repeat-containing protein (ISS 37.0 0.082 gi|115471097|ref|NP_001059147.1| Os07g0205200 [Oryza sativa (... 36.6 0.11 gi|79533267|ref|NP_199834.2| nucleotide binding [Arabidopsis ... 36.6 0.11 gi|33146605|dbj|BAC79801.1| putative TATA box binding protein... 36.6 0.11 gi|9759025|dbj|BAB09394.1| unnamed protein product [Arabidopsis 36.6 0.11 gi|116059079|emb|CAL54786.1| WD40 repeat protein (ISS) [Ostreoco 36.2 0.14 gi|79512802|ref|NP_196852.3| FY (FY) [Arabidopsis thaliana] >... 36.2 0.14 gi|115480741|ref|NP_001063964.1| Os09g0567700 [Oryza sativa (... 35.0 0.31 gi|79520288|ref|NP_197897.3| nucleotide binding / transcripti... 34.7 0.41 gi|22329818|ref|NP_174067.2| nucleotide binding [Arabidopsis ... 34.7 0.41 gi|9802540|gb|AAF99742.1|AC004557_21 F17L21.26 [Arabidopsis thal 34.7 0.41 gi|115445651|ref|NP_001046605.1| Os02g0294600 [Oryza sativa (... 34.7 0.41 gi|3122601|sp|P93107|PF20_CHLRE Flagellar WD repeat protein P... 34.7 0.41 gi|15224798|ref|NP_179544.1| nucleotide binding [Arabidopsis ... 28.5 0.51 gi|116055154|emb|CAL57550.1| WD40 repeat-containing protein (ISS 34.3 0.53 gi|115442261|ref|NP_001045410.1| Os01g0951000 [Oryza sativa (... 33.9 0.69 gi|75037131|gb|ABA12455.1| putative OsFY [Oryza sativa (japonica 33.9 0.69 gi|57900475|dbj|BAD87887.1| putative FY protein [Oryza sativa (j 33.9 0.69 gi|50261761|gb|AAT72461.1| FY protein [Lolium perenne] 33.9 0.69 gi|115482406|ref|NP_001064796.1| Os10g0465000 [Oryza sativa (... 33.5 0.91 gi|93141132|gb|ABF00072.1| chloroplast heterotrimeric G-prote... 33.5 0.91 gi|28393597|gb|AAO42218.1| putative G-protein beta subunit [Arab 33.5 0.91 gi|42565068|ref|NP_188743.3| nucleotide binding [Arabidopsis ... 33.5 0.91 gi|22758311|gb|AAN05515.1| putative WD domain containing prot... 33.5 0.91 gi|115482398|ref|NP_001064792.1| Os10g0464100 [Oryza sativa (... 33.5 0.91 gi|115469236|ref|NP_001058217.1| Os06g0649500 [Oryza sativa (... 33.5 0.91 gi|115480433|ref|NP_001063810.1| Os09g0540600 [Oryza sativa (... 33.5 0.91 gi|11994266|dbj|BAB01449.1| retinoblastoma-binding protein-like 33.5 0.91 gi|4589834|dbj|BAA76895.1| LeArcA1 protein [Solanum lycopersicum 27.3 1.1 gi|115471661|ref|NP_001059429.1| Os07g0405100 [Oryza sativa (... 33.1 1.2 gi|93141138|gb|ABF00075.1| chloroplast heterotrimeric G-prote... 33.1 1.2 gi|92887123|gb|ABE88641.1| WD40-like [Medicago truncatula] 33.1 1.2 gi|92886076|gb|ABE88086.1| hypothetical protein MtrDRAFT_AC14... 33.1 1.2 gi|2935698|gb|AAC39373.1| G protein beta subunit [Avena fatua] 33.1 1.2 gi|3023857|sp|Q39336|GBLP_BRANA Guanine nucleotide-binding pr... 26.2 1.4 gi|116059171|emb|CAL54878.1| Beta-transducin family (WD-40 re... 32.7 1.5 gi|115440269|ref|NP_001044414.1| Os01g0776400 [Oryza sativa (... 32.7 1.5 gi|74048992|gb|AAZ95170.1| WD-40 repeat family protein [Brassica 32.7 1.5 gi|22336039|dbj|BAC10503.1| G protein beta subunit [Triticum aes 32.7 1.5 gi|115478100|ref|NP_001062645.1| Os09g0241100 [Oryza sativa (... 32.3 2.0 gi|115454653|ref|NP_001050927.1| Os03g0685600 [Oryza sativa (... 32.3 2.0 gi|15225344|ref|NP_179623.1| nucleotide binding [Arabidopsis ... 32.3 2.0 gi|93141154|gb|ABF00083.1| chloroplast heterotrimeric G-prote... 32.0 2.6 gi|92869628|gb|ABE79248.1| hypothetical protein MtrDRAFT_AC13... 32.0 2.6 gi|22328400|ref|NP_567317.2| nucleotide binding [Arabidopsis ... 32.0 2.6 gi|5732049|gb|AAD48948.1|AF147262_11 contains similarity to P... 32.0 2.6 gi|115475045|ref|NP_001061119.1| Os08g0176800 [Oryza sativa (... 28.5 3.0 gi|4589836|dbj|BAA76896.1| LeArcA2 protein [Solanum lycopersicum 26.6 3.0 gi|82621178|gb|ABB86277.1| ArcA2 protein-like [Solanum tuberosum 26.6 3.0 gi|110740041|dbj|BAF01924.1| hypothetical protein [Arabidopsis t 31.6 3.4 gi|93141128|gb|ABF00070.1| chloroplast heterotrimeric G-prote... 31.6 3.4 gi|93141156|gb|ABF00084.1| chloroplast heterotrimeric G-prote... 31.6 3.4 gi|93141150|gb|ABF00081.1| chloroplast heterotrimeric G-prote... 31.6 3.4 gi|93141126|gb|ABF00069.1| chloroplast heterotrimeric G-prote... 31.6 3.4 gi|93141136|gb|ABF00074.1| chloroplast heterotrimeric G-prote... 31.6 3.4 gi|93141130|gb|ABF00071.1| chloroplast heterotrimeric G-prote... 31.6 3.4 gi|93141140|gb|ABF00076.1| chloroplast heterotrimeric G-prote... 31.6 3.4 gi|93141144|gb|ABF00078.1| chloroplast heterotrimeric G-prote... 31.6 3.4 gi|18424846|ref|NP_568990.1| FAS2 (FASCIATA 2); nucleotide bi... 31.6 3.4 gi|18379250|ref|NP_563703.1| nucleotide binding [Arabidopsis ... 31.6 3.4 gi|27311839|gb|AAO00885.1| Unknown protein [Arabidopsis thaliana 31.6 3.4 gi|3142301|gb|AAC16752.1| Contains similarity to neural cell ... 31.6 3.4 gi|42573792|ref|NP_974992.1| FAS2 (FASCIATA 2); nucleotide bindi 31.6 3.4 gi|30679647|ref|NP_671857.2| nucleotide binding [Arabidopsis ... 31.6 3.4 gi|30678798|ref|NP_849587.1| nucleotide binding [Arabidopsis tha 31.6 3.4 gi|42573790|ref|NP_974991.1| FAS2 (FASCIATA 2); nucleotide bi... 31.6 3.4 gi|26452438|dbj|BAC43304.1| unknown protein [Arabidopsis thalian 31.6 3.4 gi|2982616|emb|CAA06154.1| arcA 3 [Nicotiana tabacum] 26.2 3.9 gi|93141148|gb|ABF00080.1| chloroplast heterotrimeric G-prote... 31.2 4.5 gi|115480854|ref|NP_001064020.1| Os10g0104500 [Oryza sativa (... 31.2 4.5 gi|78707608|gb|ABB46583.1| Notchless, putative, expressed [Or... 31.2 4.5 gi|115486121|ref|NP_001068204.1| Os11g0594200 [Oryza sativa (... 31.2 4.5
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 594 Number of extensions: 20 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 761 Length of database: 101054579 Length adjustment: 111 Effective length of query: 650 Effective length of database: 69602840 Effective search space: 9883603280 Effective search space used: 9883603280 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 66 (30.0 bits)