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SSR
OF RICE
Seq Id | Gene Name | SSR Motif | SSR Type | Primer Sequences | GC % | Annealing temp | Product size | |
EU709762.1 | Calcium dependent protein kinase | (CGC)6 | Compound | FOR | GACACACACAGAGGAGGAG | 57.89 | 53.70 | 226 |
REV | GAGGGCGATCTTGCTGAT | 55.56 | 58.86 | |||||
AB002109.1 | Protein kinase | (T)13 | p1 | FOR | CAGCAACTCGTTGTTCCAGA | 60.02 | 50.00 | 204 |
REV | CCGAACGAACTGATGAGTGA | 59.83 | 50.00 | |||||
AB101657.1 | Protein kinase | (ATCC)5 | p4 | FOR | GCGATGATGCATCCTACTAC | 50.00 | 55.78 | 200 |
REV | CTGATCGATCGCTAGTGC | 55.56 | 55.37 | |||||
AB101656.1 | Protein kinase | (AG)7 | p1 | FOR | GTTTCGCGATTTCCATGC | 50.00 | 60.17 | 308 |
REV | TGGCACGCACTGTGTTAATC | 50.00 | 60.73 | |||||
AB101655.1 | Protein kinase | (TC)17 | compound | FOR | TCCTCCTCCTCCTCTCCTCT | 60.00 | 59.49 | 231 |
REV | GGAGTGAGAGTGTATGCGAGA | 52.38 | 58.04 | |||||
EF666056.1 | Mitogen-activated_protein_kinase | (GCA)5 | p3 | FOR | ACCCTCCCGCTCGATCACTT | 60.00 | 65.51 | 381 |
REV | AAGCAACCCAGCCAGGGAAC | 60.00 | 65.47 | |||||
DQ848674.1 | Mitogen-activated_prote in_kinase | (CAG)5 | p3 | FOR | GCGATTTGCTACTCCGACTC | 55.00 | 59.98 | 212 |
REV | AATCCCATCGGAATTCATCA | 40.00 | 60.10 | |||||
AB284130.1 | MAP_kinase_phosphatase, | (GGC)5 | p3 | FOR | CGACTCACTCGGATCAGGTT | 55.00 | 60.26 | 500 |
REV | GTCAGCAACCTTGGAGCACT | 55.00 | 60.45 | |||||
EF174189.1 | Defense-responsive_protein_(MPK6) | (GGC)5 | p3 | FOR | CCTACTCCGATCAACGACTA | 50.00 | 55.42 | 217 |
REV | GAGGAGACCTCGAAGAAGTT | 50.00 | 55.14 | |||||
AY524971.1 | MAP_kinase_3 | (CGA)6 | p3 | FOR | CTTCTCCTCTTCTCCTCCTC | 55.00 | 55.77 | 202 |
REV | TTCCCTTGGTTACCCATC | 50.00 | 55.66 | |||||
AF080436 | Mitogen_activated_protein_kinaseMEK1) | CGC)4 | p3 | FOR | TCTCCTTCCTAGCAGCAGCA | 55.00 | 61.71 | 309 |
REV | GGTGGATCTCGCAGTAGAGC | 60.00 | 59.98 | |||||
AY463361.1 | Benzothiadiazole-genesis_receptor_kinase1 | (TGC)4 | p3 | FOR | AAGAGGGTGGTGCTGATT | 50.00 | 55.06 | 234 |
REV | GGGTCCCAACTTTGTAGAAC | 50.00 | 55.70 | |||||
AY524974.1 | Benzothiadiazole-induced_MAP_kinase | (T)11 | p1 | FOR | GCCCGAAGGTATTTGCCTA | 52.63 | 60.05 | 246 |
REV | GGAGAGCATCCTGGTCACAT | 55.00 | 60.08 | |||||
