RESULTS SUMMARY
View contig list

  Total sequences analysed = 1248

  Sequences sorted into 359 contigs and 0 singletons

  Total SNPs detected = 1005
 

Total consensus size = 152008 bp
 

 SNP frequency = 0.66/100 bp
 

 Smallest contig = 2 sequences

 

 Total transitions = 382

  

Total transversions = 553

 

 Total indels = 70

  221 contigs containing 2 sequences

    124(56.11)% of these contigs contain snps    with a total of 378 snps

  74 contigs containing 3 sequences

    59(79.73)% of these contigs contain snps    with a total of 344 snps

  31 contigs containing 4 sequences

    28(90.32)% of these contigs contain snps    with a total of 239 snps

  12 contigs containing 5 sequences

    4(33.33)% of these contigs contain snps    with a total of 13 snps

  6 contigs containing 6 sequences

    2(33.33)% of these contigs contain snps    with a total of 7 snps

  4 contigs containing 7 sequences

    1(25.00)% of these contigs contain snps    with a total of 1 snps

  2 contigs containing 9 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 10 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 11 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 13 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 17 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 31 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 202 sequences

    1(100.00)% of these contigs contain snps

    with a total of 23 snps