Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168856679-7740-18980867387.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig13 Length=359
Score E Sequences producing significant alignments: (Bits) Value gi|121950|sp|P23444|H1_MAIZE Histone H1 >gi|22321|emb|CAA40362.1 61.2 1e-09 gi|15281594|gb|AAK94326.1| histone-like protein [Fritillaria lil 60.5 2e-09 gi|15281584|gb|AAK94321.1| histone-like protein [Fritillaria lil 60.5 2e-09 gi|15281598|gb|AAK94328.1| histone-like protein [Fritillaria lil 60.5 2e-09 gi|15281588|gb|AAK94323.1| histone-like protein [Fritillaria lil 60.5 2e-09 gi|15281578|gb|AAK94318.1| histone-like protein [Fritillaria ... 60.5 2e-09 gi|2641211|gb|AAB86857.1| histone-like protein [Fritillaria agre 60.5 2e-09 gi|15281580|gb|AAK94319.1| histone-like protein [Fritillaria lil 57.8 1e-08 gi|5230785|gb|AAD41007.1|AF107024_1 histone H1 WH1B.1 [Triticum 57.4 1e-08 gi|15281596|gb|AAK94327.1| histone-like protein [Fritillaria ... 57.0 2e-08 gi|15281606|gb|AAK94332.1| histone-like protein [Fritillaria lil 57.0 2e-08 gi|15281608|gb|AAK94333.1| histone-like protein [Fritillaria lil 57.0 2e-08 gi|15281592|gb|AAK94325.1| histone-like protein [Fritillaria ... 57.0 2e-08 gi|15281604|gb|AAK94331.1| histone-like protein [Fritillaria lil 57.0 2e-08 gi|15281586|gb|AAK94322.1| histone-like protein [Fritillaria lil 57.0 2e-08 gi|115455945|ref|NP_001051573.1| Os03g0799000 [Oryza sativa (... 56.2 3e-08 gi|556345|gb|AAA50303.1| histone H1 56.2 3e-08 gi|73587458|emb|CAJ27511.1| histone H1 subtype 7 [Pisum sativum] 56.2 3e-08 gi|15281590|gb|AAK94324.1| histone-like protein [Fritillaria lil 55.1 7e-08 gi|6474950|dbj|BAA87331.1| variant of histone H1 [Lilium longifl 54.3 1e-07 gi|3204127|emb|CAA07233.1| histone H1 [Cicer arietinum] 53.9 2e-07 gi|73587462|emb|CAJ27513.1| histone H1 subtype 7 [Pisum sativum] 53.9 2e-07 gi|73587460|emb|CAJ27512.1| histone H1 subtype 7 [Pisum sativum] 53.9 2e-07 gi|62286644|sp|Q9M5W4|H1_EUPES Histone H1 >gi|6752901|gb|AAF2... 53.9 2e-07 gi|21465095|gb|AAM54671.1|AF514417_1 histone H1 [Pisum sativu... 53.1 3e-07 gi|13540391|gb|AAK29449.1|AF352246_1 histone H1 [Pisum sativum] 53.1 3e-07 gi|13540393|gb|AAK29450.1|AF352247_1 histone H1 [Pisum sativum] 53.1 3e-07 gi|4106696|dbj|BAA36284.1| ribosome-sedimenting protein [Pisum s 53.1 3e-07 gi|4996567|dbj|BAA78535.1| ribosome-sedimenting protein [Pisum s 53.1 3e-07 gi|30420972|gb|AAP31306.1| histone H1 [Vicia hirsuta] 52.4 5e-07 gi|13540397|gb|AAK29452.1|AF352249_1 histone H1 [Lathyrus sativu 52.4 5e-07 gi|21465093|gb|AAM54670.1|AF514416_1 histone H1 [Lathyrus aphaca 52.4 5e-07 gi|13540399|gb|AAK29453.1|AF352250_1 histone H1 [Lathyrus sativu 52.4 5e-07 gi|81176340|gb|ABB59463.1| histone H1F [Nicotiana tabacum] >g... 52.4 5e-07 gi|15224536|ref|NP_180620.1| DNA binding [Arabidopsis thalian... 52.4 5e-07 gi|2623960|emb|CAA73171.1| histone H1 [Apium graveolens] 52.0 6e-07 gi|3021487|emb|CAA12232.1| histone H1 [Solanum lycopersicum] 51.2 1e-06 gi|13540395|gb|AAK29451.1|AF352248_1 histone H1 [Pisum sativum] 51.2 1e-06 gi|5230788|gb|AAD41008.1|AF107026_1 histone H1 WH1A.3 [Triticum 51.2 1e-06 gi|90704789|dbj|BAE92289.1| putative histone H1 [Cryptomeria jap 50.8 1e-06 gi|30420970|gb|AAP31305.1| histone H1 [Vicia faba] 50.8 1e-06 gi|37951219|dbj|BAD00018.1| histone 1 [Malus x domestica] 50.8 1e-06 gi|2980893|dbj|BAA25204.1| histone H1 [Triticum aestivum] 50.4 2e-06 gi|32966575|gb|AAP92164.1| histone H1 [Medicago truncatula] 50.1 2e-06 gi|5230783|gb|AAD41006.1|AF107023_1 histone H1 WH1A.2 [Triticum 49.7 3e-06 gi|5230781|gb|AAD41005.1|AF107022_1 histone H1 WH1A.1 [Triticum 49.7 3e-06 gi|14916992|sp|P27806|H1_WHEAT Histone H1 49.7 3e-06 gi|11558848|emb|CAA42529.2| histone H1 [Triticum aestivum] 49.7 3e-06 gi|46237494|emb|CAG25586.1| histone H1 [Pisum sativum] 49.3 4e-06 gi|46237496|emb|CAG25587.1| histone H1 [Pisum sativum] 49.3 4e-06 gi|29469895|gb|AAO74588.1| histone H1 subtype 5 [Pisum sativum] 49.3 4e-06 gi|28301619|emb|CAD65876.1| histone H1 [Pisum sativum] 49.3 4e-06 gi|16314|emb|CAA44312.1| histone H1-1 [Arabidopsis thaliana] 49.3 4e-06 gi|15222199|ref|NP_172161.1| DNA binding [Arabidopsis thalian... 49.3 4e-06 gi|121953|sp|P08283|H1_PEA Histone H1 (PsH1b) (PsH1b-40) >gi|... 49.3 4e-06 gi|115457440|ref|NP_001052320.1| Os04g0253000 [Oryza sativa (... 48.9 5e-06 gi|32489126|emb|CAE04793.1| OSJNBb0018J12.6 [Oryza sativa (ja... 48.9 5e-06 gi|30420974|gb|AAP31307.1| histone H1 [Lens nigricans] 48.9 5e-06 gi|13540405|gb|AAK29456.1|AF352253_1 histone H1 [Lens culinaris] 48.9 5e-06 gi|22135471|gb|AAM93216.1|AF527615_1 histone H1-like protein HON 48.9 5e-06 gi|13540403|gb|AAK29455.1|AF352252_1 histone H1 [Lens culinaris] 48.9 5e-06 gi|13540401|gb|AAK29454.1|AF352251_1 histone H1 [Lens culinaris] 48.9 5e-06 gi|585241|sp|P37218|H1_LYCES Histone H1 >gi|424100|gb|AAA50578.1 48.9 5e-06 gi|2980891|dbj|BAA25203.1| histone H1 [Triticum aestivum] 48.9 5e-06 gi|5230790|gb|AAD41009.1|AF107027_1 histone H1 WH1A.4 [Triticum 48.1 9e-06 gi|790929|gb|AAC41651.1| histone H1 48.1 9e-06 gi|6681423|dbj|BAA88671.1| histone H1 [Nicotiana tabacum] 48.1 9e-06 gi|30024108|emb|CAC84682.1| putative histone H1 [Pinus pinaster] 47.0 2e-05 gi|106879565|emb|CAJ38366.1| histone H1 [Plantago major] 46.6 3e-05 gi|47027093|gb|AAT08760.1| histone H1 [Hyacinthus orientalis] 46.2 3e-05 gi|825521|emb|CAA77867.1| H1 histone-like protein [Solanum lycop 46.2 3e-05 gi|23506611|gb|AAN37904.1| histone H1D [Nicotiana tabacum] 45.4 6e-05 gi|27529850|dbj|BAC53940.1| stress-inducible H1 histone-like pro 45.4 6e-05 gi|14594811|emb|CAC43291.1| putative linker histone H1 variant p 45.1 8e-05 gi|7595978|gb|AAF64525.1|AF253416_1 histone H1 variant [Lycopers 45.1 8e-05 gi|729668|sp|P40267|H1_LYCPN Histone H1 >gi|436823|gb|AAB0307... 45.1 8e-05 gi|5726575|gb|AAD48472.1|AF170089_1 histone H1C [Nicotiana tabac 44.7 1e-04 gi|15227957|ref|NP_179396.1| HIS1-3 (HISTONE H1-3); DNA bindi... 44.3 1e-04 gi|18463959|gb|AAL73043.1|AF461814_1 histone H1-like protein [Ze 42.7 4e-04 gi|585238|sp|Q08864|H11_VOLCA Histone H1-I >gi|349585|gb|AAA7472 42.7 4e-04 gi|414525|gb|AAA21525.1| meiotin-1 41.6 9e-04 gi|537916|gb|AAB59301.1| meiotin-1 41.6 9e-04 gi|30680194|ref|NP_849970.1| HIS1-3 (HISTONE H1-3); DNA binding 40.8 0.001 gi|115470923|ref|NP_001059060.1| Os07g0184800 [Oryza sativa (... 40.0 0.002 gi|555655|gb|AAA50196.1| DNA-binding protein 38.9 0.006 gi|585239|sp|Q08865|H12_VOLCA Histone H1-II >gi|349587|gb|AAA342 38.9 0.006 gi|92870991|gb|ABE80152.1| hypothetical protein MtrDRAFT_AC13... 37.0 0.021 gi|4218141|emb|CAA15421.1| HMR1 protein [Antirrhinum majus] 36.6 0.027 gi|571480|gb|AAA98452.1| histone H1 35.8 0.047 gi|454279|gb|AAA32718.1| DNA-binding protein 35.4 0.061 gi|110931798|gb|ABH02898.1| MYB transcription factor MYB153 [Gly 35.0 0.080 gi|110931654|gb|ABH02826.1| MYB transcription factor MYB55 [Glyc 34.7 0.10 gi|115476508|ref|NP_001061850.1| Os08g0428800 [Oryza sativa (... 34.3 0.14 gi|25553691|dbj|BAC24935.1| putative high mobility group I/Y ... 34.3 0.14 gi|15706274|emb|CAC69997.1| HMG I/Y like protein [Glycine max] 33.9 0.18 gi|47027043|gb|AAT08736.1| high mobility group I/Y-2 [Hyacinthus 33.5 0.23 gi|115466186|ref|NP_001056692.1| Os06g0130800 [Oryza sativa (... 32.7 0.40 gi|4585621|emb|CAB40849.1| HMGI/Y protein [Zea mays] 32.7 0.40 gi|108710720|gb|ABF98515.1| AT hook motif family protein, exp... 32.3 0.52 gi|121906|sp|P15871|H11_WHEAT Histone H1.1 32.3 0.52
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 11, 2007 5:57 PM Number of letters in database: 101,016,998 Number of sequences in database: 283,237 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283237 Number of Hits to DB: 120 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 359 Length of database: 101016998 Length adjustment: 86 Effective length of query: 273 Effective length of database: 76658616 Effective search space: 2529734328 Effective search space used: 2529734328 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)