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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168856947-15210-66881305647.BLASTQ4


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,457,254 sequences; 1,532,736,548 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig17
Length=329

Distribution of 7 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|44888246|sp|P93313|NU4M_ARATH  NADH-ubiquinone oxidoreducta...  28.5    7.5  
gi|112253904|ref|YP_717159.1|  NADH dehydrogenase subunit 4 [B...  28.5    7.5   Gene info
gi|38605710|sp|P27572|NU4M_WHEAT  NADH-ubiquinone oxidoreducta...  28.5    7.5  
gi|20429167|dbj|BAB91330.1|  NADH dehydrogenase subunit 4 [Beta v  28.5    7.5  
gi|14272192|emb|CAC39486.1|  NADH dehydrogenase subunit 4 [Lunula  28.1    9.8  
gi|14272190|emb|CAC39487.1|  NADH dehydrogenase subunit 4 [Riccia  28.1    9.8  
gi|11467100|ref|NP_054401.1|  NADH dehydrogenase subunit 4 [Ma...  28.1    9.8   Gene info
Alignments

>gi|44888246|sp|P93313|NU4M_ARATH  NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit 
4)
Length=495

 Score = 28.5 bits (62),  Expect = 7.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query  134  ICLLAGKSGKRR*A--YVLALFFFGTVFLFVSCQIDLCIFF  250
            IC+L G SG R     Y++A      + + V C +DL +F+
Sbjct  103  ICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLDLLLFY  143


>gi|112253904|ref|YP_717159.1| Gene info NADH dehydrogenase subunit 4 [Brassica napus]
 gi|37591106|dbj|BAC98908.1| Gene info NADH dehydrogenase subunit 4 [Brassica napus]
Length=495

 Score = 28.5 bits (62),  Expect = 7.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query  134  ICLLAGKSGKRR*A--YVLALFFFGTVFLFVSCQIDLCIFF  250
            IC+L G SG R     Y++A      + + V C +DL +F+
Sbjct  103  ICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLDLLLFY  143


>gi|38605710|sp|P27572|NU4M_WHEAT  NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit 
4)
Length=495

 Score = 28.5 bits (62),  Expect = 7.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query  134  ICLLAGKSGKRR*A--YVLALFFFGTVFLFVSCQIDLCIFF  250
            IC+L G SG R     Y++A      + + V C +DL +F+
Sbjct  103  ICILVGWSGMRSFGKEYIIAFLICEFLMIAVFCMLDLLLFY  143


>gi|20429167|dbj|BAB91330.1|  NADH dehydrogenase subunit 4 [Beta vulgaris]
Length=495

 Score = 28.5 bits (62),  Expect = 7.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +2

Query  134  ICLLAGKSGKRR*A--YVLALFFFGTVFLFVSCQIDLCIFF  250
            IC+L G SG R     Y++A      + + V C +DL +F+
Sbjct  103  ICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLDLLLFY  143


>gi|14272192|emb|CAC39486.1|  NADH dehydrogenase subunit 4 [Lunularia cruciata]
Length=418

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
 Frame = +2

Query  134  ICLLAG----KSGKRR*AYVLALFFFGTVFLFVSCQIDLCIFF  250
            IC+L G    KS K+   Y++A F   +  + V C +DL IF+
Sbjct  33   ICILVGFYSVKSYKKE--YMIAFFICESFLIAVFCSLDLLIFY  73


>gi|14272190|emb|CAC39487.1|  NADH dehydrogenase subunit 4 [Riccia fluitans]
Length=418

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
 Frame = +2

Query  134  ICLLAG----KSGKRR*AYVLALFFFGTVFLFVSCQIDLCIFF  250
            IC+L G    KS K+   Y++A F   +  + V C +DL IF+
Sbjct  33   ICILVGFYSVKSYKKE--YMIAFFICESFLIAVFCSLDLLIFY  73


>gi|11467100|ref|NP_054401.1| Gene info NADH dehydrogenase subunit 4 [Marchantia polymorpha]
 gi|464242|sp|P26848|NU4M_MARPO Gene info NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit 
4)
 gi|786185|gb|AAC09398.1| Gene info nad4 [Marchantia polymorpha]
Length=495

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
 Frame = +2

Query  134  ICLLAG----KSGKRR*AYVLALFFFGTVFLFVSCQIDLCIFF  250
            IC+L G    KS K+   Y++A F   +  + V C +DL IF+
Sbjct  103  ICILVGFYSVKSYKKE--YMIAFFICESFLIAVFCSLDLLIFY  143







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 11, 2007  5:57 PM
  Number of letters in database: 101,016,998
  Number of sequences in database:  283,237
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283237
Number of Hits to DB: 239
Number of extensions: 6
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 329
Length of database: 101016998
Length adjustment: 77
Effective length of query: 252
Effective length of database: 79207749
Effective search space: 2534647968
Effective search space used: 2534647968
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)