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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168857017-20455-115659371913.BLASTQ4


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,457,254 sequences; 1,532,736,548 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig20
Length=482

Distribution of 7 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|115464703|ref|NP_001055951.1|  Os05g0498700 [Oryza sativa (...  36.2    0.057 Gene info
gi|77999240|gb|ABB16967.1|  unknown [Solanum tuberosum]            32.7    0.63 
gi|21592623|gb|AAM64572.1|  gda-1, putative [Arabidopsis thaliana  30.0    4.1   UniGene info
gi|2369766|emb|CAA04664.1|  hypothetical protein [Citrus x paradi  30.0    4.1  
gi|21665866|emb|CAD37200.1|  GDA2 protein [Pisum sativum]          30.0    4.1  
gi|15232081|ref|NP_189345.1|  unknown protein [Arabidopsis tha...  30.0    4.1   UniGene infoGene info
gi|92895178|gb|ABE92610.1|  RNA-directed DNA polymerase (Rever...  28.9    9.0
Alignments

>gi|115464703|ref|NP_001055951.1| Gene info Os05g0498700 [Oryza sativa (japonica cultivar-group)]
 gi|48475219|gb|AAT44288.1| Gene info putative B2 protein [Oryza sativa (japonica cultivar-group)]
 gi|51038049|gb|AAT93853.1| Gene info unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113579502|dbj|BAF17865.1| Gene info Os05g0498700 [Oryza sativa (japonica cultivar-group)]
Length=314

 Score = 36.2 bits (82),  Expect = 0.057
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 0/28 (0%)
 Frame = -2

Query  475  HYXXXXXRXXLSVXETLSXXDLCEKEGI  392
            HY     R  LS+ ETLS  DLCEKEG+
Sbjct  287  HYDGPKFRLELSIAETLSLLDLCEKEGV  314


>gi|77999240|gb|ABB16967.1|  unknown [Solanum tuberosum]
Length=298

 Score = 32.7 bits (73),  Expect = 0.63
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 0/28 (0%)
 Frame = -2

Query  475  HYXXXXXRXXLSVXETLSXXDLCEKEGI  392
            HY     R  LSV ETL   DLCEK G+
Sbjct  271  HYDGPKFRLELSVPETLDLLDLCEKAGV  298


>gi|21592623|gb|AAM64572.1| UniGene info gda-1, putative [Arabidopsis thaliana]
Length=296

 Score = 30.0 bits (66),  Expect = 4.1
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 0/27 (0%)
 Frame = -2

Query  475  HYXXXXXRXXLSVXETLSXXDLCEKEG  395
            HY     R  LSV ETL   DLCE+ G
Sbjct  268  HYDGPKFRLELSVPETLDLLDLCEQAG  294


>gi|2369766|emb|CAA04664.1|  hypothetical protein [Citrus x paradisi]
Length=305

 Score = 30.0 bits (66),  Expect = 4.1
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 0/27 (0%)
 Frame = -2

Query  475  HYXXXXXRXXLSVXETLSXXDLCEKEG  395
            HY     R  LSV ETL   DLCE+ G
Sbjct  276  HYDGPKFRLELSVPETLDLMDLCEQAG  302


>gi|21665866|emb|CAD37200.1|  GDA2 protein [Pisum sativum]
Length=213

 Score = 30.0 bits (66),  Expect = 4.1
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 0/27 (0%)
 Frame = -2

Query  475  HYXXXXXRXXLSVXETLSXXDLCEKEG  395
            HY     R  LSV ETL   DLCE+ G
Sbjct  184  HYDGPKFRLELSVPETLDLMDLCEQAG  210


>gi|15232081|ref|NP_189345.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|9279632|dbj|BAB01090.1| Gene info unnamed protein product [Arabidopsis thaliana]
 gi|16604450|gb|AAL24231.1| UniGene infoGene info AT3g27090/MOJ10_18 [Arabidopsis thaliana]
 gi|21655279|gb|AAM65351.1| UniGene infoGene info AT3g27090/MOJ10_18 [Arabidopsis thaliana]
Length=296

 Score = 30.0 bits (66),  Expect = 4.1
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 0/27 (0%)
 Frame = -2

Query  475  HYXXXXXRXXLSVXETLSXXDLCEKEG  395
            HY     R  LSV ETL   DLCE+ G
Sbjct  268  HYDGPKFRLELSVPETLDLLDLCEQAG  294


>gi|92895178|gb|ABE92610.1|  RNA-directed DNA polymerase (Reverse transcriptase) [Medicago 
truncatula]
Length=681

 Score = 28.9 bits (63),  Expect = 9.0
 Identities = 11/16 (68%), Positives = 14/16 (87%), Gaps = 0/16 (0%)
 Frame = +1

Query  226  STWKYNLSNRPSKLAL  273
            ++WKY L NRPS+LAL
Sbjct  647  ASWKYKLLNRPSRLAL  662







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 11, 2007  5:57 PM
  Number of letters in database: 101,016,998
  Number of sequences in database:  283,237
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283237
Number of Hits to DB: 362
Number of extensions: 4
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 482
Length of database: 101016998
Length adjustment: 104
Effective length of query: 378
Effective length of database: 71560350
Effective search space: 4007379600
Effective search space used: 4007379600
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)