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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168857418-10492-90138086135.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,457,254 sequences; 1,532,736,548 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig26
Length=246

Distribution of 2 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|116830127|gb|ABK28021.1|  unknown [Arabidopsis thaliana]        28.1    9.6  
gi|68565309|sp|Q9LQM2|ATL1F_ARATH  Putative RING-H2 finger pro...  28.1    9.6
Alignments

>gi|116830127|gb|ABK28021.1|  unknown [Arabidopsis thaliana]
Length=333

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
 Frame = +2

Query  68   LVRSSPHSSPLPDNEWAVLPHHRHP  142
            LVRS  H  PLP +   ++ H  HP
Sbjct  218  LVRSEIHDEPLPRDTVTIIVHEEHP  242


>gi|68565309|sp|Q9LQM2|ATL1F_ARATH  Putative RING-H2 finger protein ATL1F precursor
 gi|8920611|gb|AAF81333.1|AC007767_13  Contains similarity to RING-H2 zinc finger protein ATL6 from 
Arabidopsis thaliana gb|AF132016.  It contains a zinc finger, 
C3HC4 domain PF|00097
 gi|12597863|gb|AAG60172.1|AC084110_5  hypothetical protein [Arabidopsis thaliana]
 gi|98962001|gb|ABF59330.1|  unknown protein [Arabidopsis thaliana]
Length=332

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
 Frame = +2

Query  68   LVRSSPHSSPLPDNEWAVLPHHRHP  142
            LVRS  H  PLP +   ++ H  HP
Sbjct  218  LVRSEIHDEPLPRDTVTIIVHEEHP  242







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 11, 2007  5:57 PM
  Number of letters in database: 101,016,998
  Number of sequences in database:  283,237
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283237
Number of Hits to DB: 115
Number of extensions: 1
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 246
Length of database: 101016998
Length adjustment: 53
Effective length of query: 193
Effective length of database: 86005437
Effective search space: 2494157673
Effective search space used: 2494157673
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)