RID=1168857734-334-169367899031.BLASTQ4, Contig32

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168857734-334-169367899031.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig32
Length=466

Distribution of 21 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|115434226|ref|NP_001041871.1|  Os01g0120800 [Oryza sativa (...   121    3e-50 
gi|6685541|sp|Q9XHR2|IF3A_MAIZE  Eukaryotic translation initia...   115    2e-46 
gi|15233360|ref|NP_192881.1|  EIF3A [Arabidopsis thaliana] >gi...   115    5e-44 
gi|110741442|dbj|BAE98683.1|  hypothetical protein [Arabidopsis t   115    5e-44
gi|92873696|gb|ABE82093.1|  Proteasome component region PCI [M...   114    1e-43
gi|6685538|sp|Q40554|IF3A_TOBAC  Eukaryotic translation initia...   108    1e-41
gi|116058986|emb|CAL54693.1|  Translation initiation factor 3,...  39.3    1e-05
gi|77555012|gb|ABA97808.1|  hypothetical protein LOC_Os12g2007...  30.4    2.9  
gi|117580170|dbj|BAF36549.1|  N-acetylglutamate kinase [Physco...  30.0    3.8  
gi|111146892|gb|ABH07384.1|  CMR1 [Phaseolus vulgaris]             29.3    6.5  
gi|105923188|gb|ABF81462.1|  TIR-NBS-LRR type disease resistan...  29.3    6.5  
gi|9958062|gb|AAG09551.1|AC011810_10  Putative protein phospho...  29.3    6.5  
gi|18402650|ref|NP_564546.1|  unknown protein [Arabidopsis tha...  28.9    8.4   
gi|21618061|gb|AAM67111.1|  unknown [Arabidopsis thaliana]         28.9    8.4

Alignments

 

>gi|115434226|ref|NP_001041871.1|  Os01g0120800 [Oryza sativa (japonica cultivar-group)]
 gi|43823412|emb|CAD24839.1|  translation initiation factor 3 [Oryza sativa (japonica cultivar-group)]
 gi|53791245|dbj|BAD52450.1|  putative translation initiation factor [Oryza sativa (japonica 
cultivar-group)]
 gi|113531402|dbj|BAF03785.1|  Os01g0120800 [Oryza sativa (japonica cultivar-group)]
Length=986

 Score =  121 bits (304),  Expect(2) = 3e-50
 Identities = 59/78 (75%), Positives = 71/78 (91%), Gaps = 0/78 (0%)
 Frame = +2

Query  2    EVQLAQYIPALEKLTTLRALQQVSQVYQSMKIEMLSKMIPFFDFSVVEKISVDAVKYNFV  181
            EV L+QY+PALEKLTTLR LQQ SQ++QS+KI+MLS+MIPFFDFSVVEKISVDAVK+NFV
Sbjct  436  EVFLSQYLPALEKLTTLRVLQQASQIFQSVKIDMLSRMIPFFDFSVVEKISVDAVKHNFV  495

Query  182  AMKVDHLKDAILFGNVDL  235
            AMKV+HL  A+ FG +D+
Sbjct  496  AMKVNHLSGAVHFGKMDI  513


 Score = 96.7 bits (239),  Expect(2) = 3e-50
 Identities = 51/75 (68%), Positives = 59/75 (78%), Gaps = 0/75 (0%)
 Frame = +1

Query  235  ESDRLCDHLTILADSLNRARSLIYPSVKKQSKLGENLHGLAEIVDKEHKRLLARKSIIEK  414
            ESD L +HL++LADSLN+ARSLI+P VKK SKLGENL  LA +V+ EHKRLLARKSIIEK
Sbjct  514  ESDCLSNHLSVLADSLNKARSLIHPPVKKPSKLGENLTSLAAVVENEHKRLLARKSIIEK  573

Query  415  RKXXHERXMLXXXXE  459
            RK   ER +L    E
Sbjct  574  RKEDLERQILEKEKE  588


>gi|6685541|sp|Q9XHR2|IF3A_MAIZE  Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 
theta) (Eukaryotic translation initiation factor 3 large subunit) 
(eIF3a)
 gi|5106764|gb|AAD39834.1|AF073329_1  eukaryotic translation initiation factor 3 large subunit [Zea 
mays]
Length=962

 Score =  115 bits (287),  Expect(2) = 2e-46
 Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 0/82 (0%)
 Frame = +2

Query  2    EVQLAQYIPALEKLTTLRALQQVSQVYQSMKIEMLSKMIPFFDFSVVEKISVDAVKYNFV  181
            EV+L+QYI ALEKLTTLR LQQ S +++S+KI+MLS+MIPFFDFSVVEKISVDA K NFV
Sbjct  434  EVKLSQYISALEKLTTLRVLQQASCIFKSIKIDMLSRMIPFFDFSVVEKISVDAAKQNFV  493

Query  182  AMKVDHLKDAILFGNVDLNLTG  247
            A+KVDHL   + FG VD+   G
Sbjct  494  AIKVDHLSGVVQFGTVDIESDG  515


 Score = 90.5 bits (223),  Expect(2) = 2e-46
 Identities = 50/75 (66%), Positives = 56/75 (74%), Gaps = 0/75 (0%)
 Frame = +1

Query  235  ESDRLCDHLTILADSLNRARSLIYPSVKKQSKLGENLHGLAEIVDKEHKRLLARKSIIEK  414
            ESD L DHL++LADSLN+AR  I P VKK SKLGE+L  LA IV+ EHKRLLARKSIIEK
Sbjct  512  ESDGLSDHLSVLADSLNKARIHICPPVKKPSKLGESLISLAAIVENEHKRLLARKSIIEK  571

Query  415  RKXXHERXMLXXXXE  459
            RK   ER +L    E
Sbjct  572  RKEELERQILEKEKE  586


>gi|15233360|ref|NP_192881.1|  EIF3A [Arabidopsis thaliana]
 gi|23396624|sp|Q9LD55|IF3A_ARATH  Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 
theta) (Eukaryotic translation initiation factor 3 large subunit) 
(eIF3a) (p114)
 gi|12407749|gb|AAG53635.1|AF291711_1  initiation factor 3a [Arabidopsis thaliana]
 gi|7267841|emb|CAB81243.1|  putative protein [Arabidopsis thaliana]
 gi|7321039|emb|CAB82147.1|  putative protein [Arabidopsis thaliana]
 gi|110741456|dbj|BAE98688.1|  hypothetical protein [Arabidopsis thaliana]
Length=987

 Score =  115 bits (289),  Expect(2) = 5e-44
 Identities = 54/82 (65%), Positives = 70/82 (85%), Gaps = 0/82 (0%)
 Frame = +2

Query  2    EVQLAQYIPALEKLTTLRALQQVSQVYQSMKIEMLSKMIPFFDFSVVEKISVDAVKYNFV  181
            EVQL+QY+P+LEKL TLR LQQVS++YQ+++IE LS+++PFF FS VEKISVDAVK NFV
Sbjct  436  EVQLSQYVPSLEKLATLRLLQQVSKIYQTIRIESLSQLVPFFQFSEVEKISVDAVKNNFV  495

Query  182  AMKVDHLKDAILFGNVDLNLTG  247
            AMKVDH+K  ++FGN+ +   G
Sbjct  496  AMKVDHMKGVVIFGNLGIESDG  517


 Score = 81.3 bits (199),  Expect(2) = 5e-44
 Identities = 42/77 (54%), Positives = 52/77 (67%), Gaps = 0/77 (0%)
 Frame = +1

Query  229  GFESDRLCDHLTILADSLNRARSLIYPSVKKQSKLGENLHGLAEIVDKEHKRLLARKSII  408
            G ESD L DHL + A+SL++ R+++YP   K SKL   +  LA+ V+KEHKRLLARKSII
Sbjct  512  GIESDGLRDHLAVFAESLSKVRAMLYPVPSKASKLAGVIPNLADTVEKEHKRLLARKSII  571

Query  409  EKRKXXHERXMLXXXXE  459
            EKRK   ER  L    E
Sbjct  572  EKRKEDQERQQLEMERE  588


>gi|110741442|dbj|BAE98683.1|  hypothetical protein [Arabidopsis thaliana]
Length=646

 Score =  115 bits (289),  Expect(2) = 5e-44
 Identities = 54/82 (65%), Positives = 70/82 (85%), Gaps = 0/82 (0%)
 Frame = +2

Query  2    EVQLAQYIPALEKLTTLRALQQVSQVYQSMKIEMLSKMIPFFDFSVVEKISVDAVKYNFV  181
            EVQL+QY+P+LEKL TLR LQQVS++YQ+++IE LS+++PFF FS VEKISVDAVK NFV
Sbjct  436  EVQLSQYVPSLEKLATLRLLQQVSKIYQTIRIESLSQLVPFFQFSEVEKISVDAVKNNFV  495

Query  182  AMKVDHLKDAILFGNVDLNLTG  247
            AMKVDH+K  ++FGN+ +   G
Sbjct  496  AMKVDHMKGVVIFGNLGIESDG  517


 Score = 81.3 bits (199),  Expect(2) = 5e-44
 Identities = 42/77 (54%), Positives = 52/77 (67%), Gaps = 0/77 (0%)
 Frame = +1

Query  229  GFESDRLCDHLTILADSLNRARSLIYPSVKKQSKLGENLHGLAEIVDKEHKRLLARKSII  408
            G ESD L DHL + A+SL++ R+++YP   K SKL   +  LA+ V+KEHKRLLARKSII
Sbjct  512  GIESDGLRDHLAVFAESLSKVRAMLYPVPSKASKLAGVIPNLADTVEKEHKRLLARKSII  571

Query  409  EKRKXXHERXMLXXXXE  459
            EKRK   ER  L    E
Sbjct  572  EKRKEDQERQQLEMERE  588


>gi|92873696|gb|ABE82093.1|  Proteasome component region PCI [Medicago truncatula]
 gi|92897901|gb|ABE93946.1|  Proteasome component region PCI [Medicago truncatula]
Length=959

 Score =  114 bits (286),  Expect(2) = 1e-43
 Identities = 57/82 (69%), Positives = 66/82 (80%), Gaps = 0/82 (0%)
 Frame = +2

Query  2    EVQLAQYIPALEKLTTLRALQQVSQVYQSMKIEMLSKMIPFFDFSVVEKISVDAVKYNFV  181
            EVQ +QY+PALEKL TLR LQQVS VYQSMKIE L+ MIPFFDFSVVEKISVDAVK  F+
Sbjct  436  EVQFSQYVPALEKLATLRLLQQVSNVYQSMKIENLAGMIPFFDFSVVEKISVDAVKQKFL  495

Query  182  AMKVDHLKDAILFGNVDLNLTG  247
            +MKVDH+K+ ++F    L   G
Sbjct  496  SMKVDHMKNVVIFCKTSLEADG  517


 Score = 81.3 bits (199),  Expect(2) = 1e-43
 Identities = 44/75 (58%), Positives = 52/75 (69%), Gaps = 0/75 (0%)
 Frame = +1

Query  235  ESDRLCDHLTILADSLNRARSLIYPSVKKQSKLGENLHGLAEIVDKEHKRLLARKSIIEK  414
            E+D L DHL   A+ LN+AR +I P  +KQSKLG  L  L+E+V KEHKRLLARKSIIEK
Sbjct  514  EADGLRDHLASFAEQLNKARQMICPPDRKQSKLGALLPTLSEVVAKEHKRLLARKSIIEK  573

Query  415  RKXXHERXMLXXXXE  459
            RK   ER +L    E
Sbjct  574  RKEEQERQLLEKERE  588


>gi|6685538|sp|Q40554|IF3A_TOBAC  Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 
theta) (Eukaryotic translation initiation factor 3 large subunit) 
(eIF3a) (PNLA-35)
 gi|506471|emb|CAA56189.1|  unnamed protein product [Nicotiana tabacum]
Length=958

 Score =  108 bits (269),  Expect(2) = 1e-41
 Identities = 51/68 (75%), Positives = 64/68 (94%), Gaps = 0/68 (0%)
 Frame = +2

Query  2    EVQLAQYIPALEKLTTLRALQQVSQVYQSMKIEMLSKMIPFFDFSVVEKISVDAVKYNFV  181
            EVQL+QY+PALEKL TLR LQQVSQVYQ+++I+ +SKMIPFFDF+V+EKISVDAV+ NF+
Sbjct  436  EVQLSQYVPALEKLATLRLLQQVSQVYQTIQIDNISKMIPFFDFTVIEKISVDAVRRNFL  495

Query  182  AMKVDHLK  205
            A+KVDH+K
Sbjct  496  AIKVDHMK  503


 Score = 81.3 bits (199),  Expect(2) = 1e-41
 Identities = 41/59 (69%), Positives = 49/59 (83%), Gaps = 0/59 (0%)
 Frame = +1

Query  268  LADSLNRARSLIYPSVKKQSKLGENLHGLAEIVDKEHKRLLARKSIIEKRKXXHERXML  444
            LA+SL++AR++IYP  KK +KLGE L  LAEIV+KEHKRLLARKSIIEKRK   ER +L
Sbjct  525  LAESLSKARTMIYPPAKKAAKLGEALSNLAEIVEKEHKRLLARKSIIEKRKEEQERLLL  583


>gi|116058986|emb|CAL54693.1|  Translation initiation factor 3, subunit a (eIF-3a) (ISS) [Ostreococcus 
tauri]
Length=966

 Score = 39.3 bits (90),  Expect(2) = 1e-05
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +2

Query  95   IEMLSKMIPFFDFSVVEKISVDAVKYNFVAMKVDHLKDAILFGNVDLNLTGFVIT  259
            I+ L   +PF  +  VE+I V A++ +++A+K+DH   ++ F    L  TGF+ T
Sbjct  490  IDSLKSSVPFMPYHEVERILVQAIRNDYIAVKIDHASGSMHFVGDRLE-TGFIKT  543


 Score = 28.5 bits (62),  Expect(2) = 1e-05
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
 Frame = +1

Query  256  HLTILADSLNRARSLIYPSVKKQSKLGENLHG--LAEIVDKEHKRLLARKSIIEKRKXXH  429
            HLT  A  L    S I P   K    G  + G  L   V+ EHKR LARK  + K K  H
Sbjct  544  HLTRAARLLQEGMSKIAP---KTPATGARVLGTELRAAVEAEHKRALARK--VRKLKKRH  598

Query  430  E  432
            +
Sbjct  599  D  599


>gi|77555012|gb|ABA97808.1|  hypothetical protein LOC_Os12g20070 [Oryza sativa (japonica cultivar-group)]
Length=375

 Score = 30.4 bits (67),  Expect = 2.9
 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 23/89 (25%)
 Frame = -1

Query  460  PPXPXPAYXAH--------VXPCVSQLSISGQEAFCVPYP-LFPLNHVGFPPVWIAFSLM  308
            PP P P Y  H          P    +S + QE        +F +N +  PPVW+     
Sbjct  246  PPSPSPLYPIHSDDEAEAEATPSAMDISEASQEPETTRGTRMFHINDLNVPPVWV-----  300

Query  307  DKSGSSLY*ENQQEWSGDHKACQIQIHIT  221
                     E Q+E   + +  + Q HIT
Sbjct  301  ---------ETQEEEDPEERIFETQEHIT  320


>gi|117580170|dbj|BAF36549.1|  N-acetylglutamate kinase [Physcomitrella patens]
 gi|117580172|dbj|BAF36550.1|  N-acetylglutamate kinase [Physcomitrella patens]
Length=347

 Score = 30.0 bits (66),  Expect = 3.8
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +2

Query  23   IPALEKLTTLRALQQVSQVYQSMKIEMLSKMIPFFDFSVVEKISVDAVKYNFVAMKVDHL  202
            + A+   T  +A  + SQ     ++++L++ +PF      + +    VKY   AMK + L
Sbjct  48   VEAVTDQTARQAAVRTSQYTGKERVDILAEALPFIQRFQGKTV---VVKYGGAAMKDESL  104

Query  203  KDAILFGNVDLNLTG  247
            KD ++   V L+  G
Sbjct  105  KDGVIKDLVLLSCVG  119


>gi|111146892|gb|ABH07384.1|  CMR1 [Phaseolus vulgaris]
Length=1133

 Score = 29.3 bits (64),  Expect = 6.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 0/38 (0%)
 Frame = +1

Query  250  CDHLTILADSLNRARSLIYPSVKKQSKLGENLHGLAEI  363
            C +L  L D++++ RSLI  +V   SKL     GL EI
Sbjct  753  CKNLVCLPDTIHKLRSLIVLNVSGCSKLSSLPEGLKEI  790


>gi|105923188|gb|ABF81462.1|  TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]
Length=1151

 Score = 29.3 bits (64),  Expect = 6.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 0/32 (0%)
 Frame = -1

Query  442   AYXAHVXPCVSQLSISGQEAFCVPYPLFPLNH  347
             A  +H  P V++L+ISG E    P P FP  H
Sbjct  977   ALPSHHLPRVTRLTISGCEQLATPLPRFPRLH  1008


>gi|9958062|gb|AAG09551.1|AC011810_10  Putative protein phosphotase 2a 65kd regulatory subunit [Arabidopsis 
thaliana]
Length=591

 Score = 29.3 bits (64),  Expect = 6.5
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query  2    EVQLAQYIPALEKLTTLRALQQVSQVYQSMKIEMLSKMIPFFDFSVVEKI  151
            E+  ++ +PAL K TTL +  +V  +  ++  +M+  +IP  D +VVE +
Sbjct  509  EITCSKLLPALTKRTTLSSSFRVPNIKFNV-AKMMQSLIPIVDQAVVENM  557


>gi|18402650|ref|NP_564546.1|  unknown protein [Arabidopsis thaliana]
 gi|5430771|gb|AAD43171.1|AC007504_26  Unknown Protein [Arabidopsis thaliana]
 gi|105830110|gb|ABF74714.1|  At1g49470 [Arabidopsis thaliana]
Length=302

 Score = 28.9 bits (63),  Expect = 8.4
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 0/36 (0%)
 Frame = +2

Query  113  MIPFFDFSVVEKISVDAVKYNFVAMKVDHLKDAILF  220
            +I FF F  +  +++D   +NF ++K D+L+ A +F
Sbjct  55   LILFFSFLSITLLTLDFPNFNFSSLKPDNLEHASMF  90


>gi|21618061|gb|AAM67111.1|  unknown [Arabidopsis thaliana]
Length=302

 Score = 28.9 bits (63),  Expect = 8.4
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 0/36 (0%)
 Frame = +2

Query  113  MIPFFDFSVVEKISVDAVKYNFVAMKVDHLKDAILF  220
            +I FF F  +  +++D   +NF ++K D+L+ A +F
Sbjct  55   LILFFSFLSITLLTLDFPNFNFSSLKPDNLEHASMF  90

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 11, 2007  5:57 PM
  Number of letters in database: 101,016,998
  Number of sequences in database:  283,237
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283237
Number of Hits to DB: 292
Number of extensions: 2
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 466
Length of database: 101016998
Length adjustment: 103
Effective length of query: 363
Effective length of database: 71843587
Effective search space: 3735866524
Effective search space used: 3735866524
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 62 (28.5 bits)