Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168857953-28244-36308229372.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig38 Length=379
Score E Sequences producing significant alignments: (Bits) Value gi|50234013|ref|YP_052791.1| hypothetical protein OrniCp118 [... 183 2e-46 gi|94502580|ref|YP_588382.1| hypothetical protein ZeamMp129 [... 125 3e-35 gi|11466830|ref|NP_039426.1| hypothetical protein OrsajCp068 ... 129 4e-30 gi|19920148|gb|AAM08580.1|AC092750_14 Hypothetical protein OR... 125 3e-29 gi|11467233|ref|NP_043065.1| hypothetical protein ZemaCp064 [... 120 2e-27 gi|48478714|ref|YP_024321.1| hypothetical protein 75 [Sacchar... 117 1e-26 gi|78103313|ref|YP_358623.1| hypothetical protein PhapfoPp076... 102 3e-22 gi|29565622|ref|NP_817201.1| ORF46b [Pinus koraiensis] >gi|29... 54.7 9e-08 gi|132861|sp|P21434|RK2_NICDE Chloroplast 50S ribosomal protein 42.0 6e-04 gi|121720655|ref|YP_001001576.1| ribosomal protein L2 [Nuphar... 41.6 8e-04 gi|118614533|ref|YP_899449.1| ribosomal protein L2 [Sorghum b... 41.6 8e-04 gi|38344817|emb|CAE02873.2| OSJNBb0022F23.10 [Oryza sativa (japo 41.6 8e-04 gi|3900977|emb|CAA37241.1| ribosomal protein L2 [Zea mays] 41.6 8e-04 gi|70609338|gb|AAZ04904.1| ribosomal protein L2 [Typha latifolia 41.6 8e-04 gi|70609340|gb|AAZ04905.1| ribosomal protein L2 [Yucca schidiger 41.6 8e-04 gi|75755701|ref|YP_319805.1| ribosomal protein L2 [Acorus cal... 41.6 8e-04 gi|50346825|ref|YP_053196.1| ribosomal protein L2 [Nymphaea a... 41.6 8e-04 gi|48478751|ref|YP_024359.1| ribosomal protein L2 [Saccharum ... 41.6 8e-04 gi|34500955|ref|NP_904140.1| ribosomal protein L2 [Amborella ... 41.6 8e-04 gi|34394232|dbj|BAC84684.1| ribosomal protein L2, chloroplast... 41.6 8e-04 gi|32480884|ref|NP_862795.1| ribosomal protein L2 [Calycanthu... 41.6 8e-04 gi|118430343|ref|YP_874778.1| ribosomal protein L2 [Agrostis ... 41.6 8e-04 gi|577558|emb|CAA55028.1| rpl 2 [Hordeum vulgare subsp. vulgare] 41.6 8e-04 gi|11467235|ref|NP_043066.1| ribosomal protein L2 [Zea mays] ... 41.6 8e-04 gi|14017613|ref|NP_114299.1| ribosomal protein L2 [Triticum a... 41.6 8e-04 gi|22417464|ref|NP_039463.2| ribosomal protein L2 [Oryza sati... 41.6 8e-04 gi|1213600|emb|CAA33924.1| ribosomal protein L2 [Oryza sativa... 41.6 8e-04 gi|115604975|ref|YP_784428.1| ribosomal protein L2 [Drimys gr... 40.4 0.002 gi|115605063|ref|YP_784515.1| ribosomal protein L2 [Piper cen... 39.7 0.003 gi|70609334|gb|AAZ04902.1| ribosomal protein L2 [Nuphar advena] 39.7 0.003 gi|70609330|gb|AAZ04900.1| ribosomal protein L2 [Acorus american 39.7 0.003 gi|114107111|ref|YP_740266.1| ribosomal protein L2 [Liriodend... 39.3 0.004 gi|114107087|ref|YP_740243.1| ribosomal protein L2 [Liriodend... 39.3 0.004 gi|78103302|ref|YP_358647.1| ribosomal protein L2 [Phalaenops... 39.3 0.004 gi|78103291|ref|YP_358624.1| ribosomal protein L2 [Phalaenops... 39.3 0.004 gi|11466971|ref|NP_054392.1| ribosomal protein L2 [Epifagus v... 38.5 0.007 gi|38099028|gb|AAR11150.1| ribosomal protein L2 [Cucurbita pepo] 37.7 0.012 gi|121308426|dbj|BAF43596.1| rpl2 [Ranunculus japonicus] 37.4 0.016 gi|116617149|ref|YP_817524.1| ribosomal protein L2 [Coffea ar... 37.4 0.016 gi|116617172|ref|YP_817545.1| ribosomal protein L2 [Coffea ar... 37.4 0.016 gi|115391942|ref|YP_778531.1| ribosomal protein L2 [Jasminum ... 37.4 0.016 gi|114330011|ref|YP_740692.1| ribosomal protein L2 [Nandina d... 37.4 0.016 gi|114107174|ref|YP_740159.1| ribosomal protein L2 [Daucus ca... 37.4 0.016 gi|94502532|ref|YP_588159.1| ribosomal protein L2 [Helianthus... 37.4 0.016 gi|91984033|ref|YP_567119.1| ribosomal protein L2 [Vitis vini... 37.4 0.016 gi|21304463|emb|CAD29834.2| putative ribosomal protein L2 [Vitis 37.4 0.016 gi|70609336|gb|AAZ04903.1| ribosomal protein L2 [Ranunculus macr 37.4 0.016 gi|52220851|ref|YP_087007.1| ribosomal protein L2 [Panax gins... 37.4 0.016 gi|28261758|ref|NP_783272.1| ribosomal protein L2 [Atropa bel... 37.4 0.016 gi|28261783|ref|NP_783296.1| ribosomal protein L2 [Atropa bel... 37.4 0.016 gi|11465998|ref|NP_054540.1| ribosomal protein L2 [Nicotiana ... 37.4 0.016 gi|68052867|sp|Q589A7|RK2_SILLA Chloroplast 50S ribosomal pro... 37.0 0.020 gi|11497599|ref|NP_055005.1| ribosomal protein L12 [Spinacia ... 37.0 0.020 gi|81176293|ref|YP_398370.1| ribosomal protein L2 [Lactuca sa... 35.8 0.045 gi|400994|sp|P31163|RK2_PEA Chloroplast 50S ribosomal protein... 35.8 0.045 gi|121308429|dbj|BAF43598.1| rpl2 [Elaeagnus formosana] 35.4 0.059 gi|114804305|ref|YP_762302.1| ribosomal protein L2 [Morus ind... 35.4 0.059 gi|114329789|ref|YP_740607.1| ribosomal protein L2 [Platanus ... 35.4 0.059 gi|110588825|gb|ABG76911.1| ribosomal protein L2 [Fragaria x ana 35.4 0.059 gi|110588833|gb|ABG76918.1| ribosomal protein L2 [Prunus persica 35.4 0.059 gi|110227141|ref|YP_665619.1| ribosomal protein L2 [Populus a... 35.4 0.059 gi|110227120|ref|YP_665599.1| ribosomal protein L2 [Populus a... 35.4 0.059 gi|38099004|gb|AAR11138.1| ribosomal protein L2 [Ecballium el... 35.4 0.059 gi|38099012|gb|AAR11142.1| ribosomal protein L2 [Acanthosicyos n 35.4 0.059 gi|91208941|ref|YP_538976.1| ribosomal protein L2 [Gossypium ... 35.4 0.059 gi|108802682|ref|YP_636340.1| ribosomal protein L2 [Eucalyptu... 35.4 0.059 gi|68164845|ref|YP_247641.1| ribosomal protein L2 [Cucumis sa... 35.4 0.059 gi|132863|sp|P27107|RK2_SINAL Chloroplast 50S ribosomal prote... 35.4 0.059 gi|13518478|ref|NP_084837.1| ribosomal protein L2 [Lotus corn... 35.4 0.059 gi|7525074|ref|NP_051099.1| ribosomal protein L2 [Arabidopsis... 35.4 0.059 gi|25992902|gb|AAN77249.1| ribosomal protein L2 [Oryza sativa] 35.0 0.078 gi|2769663|gb|AAD15254.1| ribosomal protein L2 [Oryza sativa] 35.0 0.078 gi|11466745|ref|NP_039341.1| ribosomal protein L2 [Marchantia... 35.0 0.078 gi|114329696|ref|YP_740517.1| ribosomal protein L2 [Citrus si... 34.3 0.13 gi|108773078|ref|YP_635987.1| ribosomal protein L2 [Scenedesm... 33.9 0.17 gi|669076|emb|CAA29735.1| rpl2 [Glycine max] 33.9 0.17 gi|91214205|ref|YP_538827.1| ribosomal protein L2 [Glycine ma... 33.9 0.17 gi|91214181|ref|YP_538805.1| ribosomal protein L2 [Glycine ma... 33.9 0.17 gi|28202214|ref|NP_777455.1| ribosomal protein L2 [Anthoceros... 33.9 0.17 gi|42559265|sp|Q8LVH2|RK2_PHAAN Chloroplast 50S ribosomal pro... 33.9 0.17 gi|22711952|ref|NP_683843.1| ribosomal protein L2 [Chaetospha... 33.9 0.17 gi|119368540|ref|YP_913228.1| ribosomal protein L2 [Gossypium... 33.5 0.23 gi|108773249|ref|YP_635791.1| ribosomal protein L2 [Chara vul... 33.5 0.23 gi|70609332|gb|AAZ04901.1| ribosomal protein L2 [Ginkgo biloba] 33.5 0.23 gi|108744233|gb|ABD62231.1| ribosomal protein L2 [Chlorokybus at 32.7 0.38 gi|13518375|ref|NP_084734.1| ribosomal protein L2 [Oenothera ... 32.7 0.38 gi|18860353|ref|NP_569670.1| ribosomal protein L2 [Psilotum n... 32.7 0.38 gi|115531943|ref|YP_784098.1| ribosomal protein L2 [Pelargoni... 32.0 0.66 gi|113170444|ref|YP_717236.1| Rpl2 [Ostreococcus tauri] >gi|1... 32.0 0.66 gi|6093986|sp|O62954|RK2_PICAB Chloroplast 50S ribosomal prot... 32.0 0.66 gi|29565717|ref|NP_817235.1| ribosomal protein L2 [Pinus kora... 32.0 0.66 gi|7524696|ref|NP_042450.1| ribosomal protein L2 [Pinus thunb... 32.0 0.66 gi|115350002|ref|YP_764390.1| ribosomal protein L2 [Stigeoclo... 31.6 0.86 gi|108773371|ref|YP_635833.1| ribosomal protein L2 [Oltmannsi... 31.2 1.1 gi|108796728|ref|YP_636488.1| ribosomal protein L2 [Zygnema c... 30.8 1.5 gi|108796830|ref|YP_636419.1| ribosomal protein L2 [Staurastr... 30.8 1.5 gi|60117153|ref|YP_209487.1| ribosomal protein L2 [Huperzia l... 30.8 1.5 gi|67968331|dbj|BAE00231.1| ribosomal protein L2 [Selaginella un 30.4 1.9 gi|34501446|ref|NP_904233.1| ribosomal protein L2 [Physcomitr... 30.4 1.9 gi|11467776|ref|NP_050827.1| ribosomal protein L2 [Nephroselm... 29.6 3.3
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 11, 2007 5:57 PM Number of letters in database: 101,016,998 Number of sequences in database: 283,237 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283237 Number of Hits to DB: 265 Number of extensions: 8 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 379 Length of database: 101016998 Length adjustment: 93 Effective length of query: 286 Effective length of database: 74675957 Effective search space: 2464306581 Effective search space used: 2464306581 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)