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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168858830-24059-84899029773.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,457,254 sequences; 1,532,736,548 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig52
Length=488

Distribution of 30 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|117671302|gb|ABK56834.1|  RPS3 [Cymbidium hybrid cultivar]       224    2e-58
gi|115488288|ref|NP_001066631.1|  Os12g0406200 [Oryza sativa (...   223    3e-58 Gene info
gi|92874745|gb|ABE82962.1|  Ribosomal protein S3Ae [Medicago t...   221    8e-58
gi|115451377|ref|NP_001049289.1|  Os03g0200500 [Oryza sativa (...   220    2e-57 Gene info
gi|24817254|emb|CAD56219.1|  ribosomal protein S3a [Cicer arietin   218    1e-56
gi|1856971|dbj|BAA05057.1|  cyc07 [Catharanthus roseus]             218    1e-56
gi|4079800|gb|AAC98779.1|  S-phase-specific ribosomal protein [Or   217    2e-56 UniGene info
gi|115445597|ref|NP_001046578.1|  Os02g0287000 [Oryza sativa (...   217    2e-56 Gene info
gi|217903|dbj|BAA00860.1|  cyc07 [Catharanthus roseus]              216    3e-56
gi|1350983|sp|P33444|RS3A_CATRO  40S ribosomal protein S3a (CYC07   216    3e-56
gi|76262913|gb|ABA41527.1|  cyc07 [Nicotiana tabacum]               216    4e-56 UniGene info
gi|81074465|gb|ABB55367.1|  cyc07-like [Solanum tuberosum] >gi...   213    3e-55
gi|32401367|gb|AAP80855.1|  cyc07 [Triticum aestivum]               212    5e-55 UniGene infoGene info
gi|1350981|sp|P49396|RS3A_BRARA  40S ribosomal protein S3a (S ...   212    5e-55
gi|6714564|dbj|BAA89498.1|  cyc07 [Daucus carota]                   212    5e-55
gi|82623437|gb|ABB87133.1|  40S ribosomal protein S3a-like [Solan   211    8e-55
gi|82400124|gb|ABB72801.1|  40S ribosomal protein S3a-like protei   211    8e-55
gi|1350984|sp|P49198|RS3A_HELAN  40S ribosomal protein S3a >gi...   211    8e-55
gi|15236171|ref|NP_195193.1|  structural constituent of riboso...   211    1e-54 UniGene infoGene info
gi|81074079|gb|ABB55362.1|  cyc07-like [Solanum tuberosum] >gi...   210    2e-54
gi|15229364|ref|NP_187135.1|  structural constituent of riboso...   209    3e-54 UniGene infoGene info
gi|61807078|gb|AAX55706.1|  cyc07 [Vitis vinifera]                  207    1e-53 UniGene info
gi|82400138|gb|ABB72808.1|  cyc07-like protein [Solanum tuberosum   198    7e-51
gi|17369860|sp|Q9XEG7|RS3A_TORRU  40S ribosomal protein S3a >g...   183    3e-46
gi|91940160|gb|ABE66401.1|  S phase protein [Striga asiatica]       159    5e-39
gi|109390473|gb|ABG33775.1|  ribosomal S3a [Musa acuminata]         101    1e-21
gi|22759731|dbj|BAC10914.1|  putative 40S ribosomal protein S3A [  80.1    4e-15
gi|116056281|emb|CAL56664.1|  Mitochondrial processing peptida...  47.0    7e-10
gi|108708366|gb|ABF96161.1|  hypothetical protein LOC_Os03g253...  28.9    9.4
Alignments

>gi|117671302|gb|ABK56834.1|  RPS3 [Cymbidium hybrid cultivar]
Length=261

 Score =  224 bits (570),  Expect = 2e-58
 Identities = 119/147 (80%), Positives = 123/147 (83%), Gaps = 0/147 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK   VDPF+  DWYDIKAPS F VRN GKTL SRT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGGKKKTVDPFSKKDWYDIKAPSVFTVRNIGKTLVSRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFEISLADL  DED +YRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL
Sbjct  61   LKHRVFEISLADLQNDEDQSYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            IEAH+DVKTTDNYTLR+FCIG    RP
Sbjct  121  IEAHIDVKTTDNYTLRLFCIGFTKRRP  147


>gi|115488288|ref|NP_001066631.1| Gene info Os12g0406200 [Oryza sativa (japonica cultivar-group)]
 gi|108862547|gb|ABG21991.1| Gene info 40S ribosomal protein S3a, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113649138|dbj|BAF29650.1| Gene info Os12g0406200 [Oryza sativa (japonica cultivar-group)]
Length=260

 Score =  223 bits (567),  Expect = 3e-58
 Identities = 118/147 (80%), Positives = 121/147 (82%), Gaps = 0/147 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKG K   VDPFA  DWYDIKAPS FNVRN GKTL SRT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED AYRKIRLRAEDVQGKNVLTNFWGM FTTDKLRSLV+KWQTL
Sbjct  61   LKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            IEAHVDVKTTDNY LR+FCIG    RP
Sbjct  121  IEAHVDVKTTDNYMLRLFCIGFTKRRP  147


>gi|92874745|gb|ABE82962.1|  Ribosomal protein S3Ae [Medicago truncatula]
 gi|92886882|gb|ABE88517.1|  Ribosomal protein S3Ae [Medicago truncatula]
Length=298

 Score =  221 bits (564),  Expect = 8e-58
 Identities = 119/148 (80%), Positives = 123/148 (83%), Gaps = 0/148 (0%)
 Frame = +1

Query  40   TDMAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXAS  219
            T MAVG    ISKGKKGGK  A DPFA  DWYDIKAPS F V+N GKTL SRT GT  AS
Sbjct  36   TIMAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIAS  95

Query  220  EGLKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQ  399
            EGLKH VFE+SLADL  DED A+RKIRLRAEDVQGKN+LTNFWGMDFTTDKLRSLVRKWQ
Sbjct  96   EGLKHRVFEVSLADLQGDEDNAFRKIRLRAEDVQGKNLLTNFWGMDFTTDKLRSLVRKWQ  155

Query  400  TLIEAHVDVKTTDNYTLRMFCIGXXXXR  483
            TLIEAHVDVKTTDNYTLRMFCIG    R
Sbjct  156  TLIEAHVDVKTTDNYTLRMFCIGFTKRR  183


>gi|115451377|ref|NP_001049289.1| Gene info Os03g0200500 [Oryza sativa (japonica cultivar-group)]
 gi|1350986|sp|P49397|RS3A_ORYSA  40S ribosomal protein S3a (CYC07 protein)
 gi|483431|dbj|BAA05059.1| UniGene info cyc07 [Oryza sativa]
 gi|108706696|gb|ABF94491.1| Gene info 40S ribosomal protein S3a, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113547760|dbj|BAF11203.1| Gene info Os03g0200500 [Oryza sativa (japonica cultivar-group)]
Length=262

 Score =  220 bits (561),  Expect = 2e-57
 Identities = 117/147 (79%), Positives = 120/147 (81%), Gaps = 0/147 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKG K   VDPFA  DWYDIKAPS FNVRN GKTL SRT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED AYRKIRLRAEDVQGKNVLTNFWGM FTTDKLRSLV+KWQTL
Sbjct  61   LKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            IEAHVDVKTTD Y LR+FCIG    RP
Sbjct  121  IEAHVDVKTTDGYMLRLFCIGFTKRRP  147


>gi|24817254|emb|CAD56219.1|  ribosomal protein S3a [Cicer arietinum]
Length=261

 Score =  218 bits (554),  Expect = 1e-56
 Identities = 118/146 (80%), Positives = 122/146 (83%), Gaps = 0/146 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK  A DPF+  DWYDIKAPS F V+N GKTL SRT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFEISLADL  DED A+RKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKWQTL
Sbjct  61   LKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXR  483
            IEAHVDVKTTDNYTLRMFCIG    R
Sbjct  121  IEAHVDVKTTDNYTLRMFCIGFTKRR  146


>gi|1856971|dbj|BAA05057.1|  cyc07 [Catharanthus roseus]
Length=245

 Score =  218 bits (554),  Expect = 1e-56
 Identities = 116/146 (79%), Positives = 123/146 (84%), Gaps = 0/146 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK  A DPFA  DWYDIKAPS F+VRN GKTL +RT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFEISLADL  DED ++RKIRLRAED+QGKNVLTNFWGMDFTTDKLRSLVRKWQ+L
Sbjct  61   LKHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXR  483
            IEAHVDVKTTD+YTLRMFCIG    R
Sbjct  121  IEAHVDVKTTDSYTLRMFCIGFTKKR  146


>gi|4079800|gb|AAC98779.1| UniGene info S-phase-specific ribosomal protein [Oryza sativa]
Length=261

 Score =  217 bits (552),  Expect = 2e-56
 Identities = 112/147 (76%), Positives = 121/147 (82%), Gaps = 0/147 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKG+KG K   VDPF+  DWYDIKAP+ F+VRN GKTL SRT GT  ASEG
Sbjct  1    MAVGKNKRISKGRKGSKKKTVDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED AYRK+RLRAEDVQG+NVLTNFWGM FTTDKLRSLV+KWQTL
Sbjct  61   LKHRVFEVSLADLRNDEDQAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            IEAHVDVKTTDNY LR+FCIG    RP
Sbjct  121  IEAHVDVKTTDNYMLRLFCIGFTKRRP  147


>gi|115445597|ref|NP_001046578.1| Gene info Os02g0287000 [Oryza sativa (japonica cultivar-group)]
 gi|47847734|dbj|BAD21513.1| Gene info putative ribosomal protein S3a, cytosolic [Oryza sativa (japonica 
cultivar-group)]
 gi|47847921|dbj|BAD21711.1| Gene info putative ribosomal protein S3a, cytosolic [Oryza sativa (japonica 
cultivar-group)]
 gi|113536109|dbj|BAF08492.1| Gene info Os02g0287000 [Oryza sativa (japonica cultivar-group)]
Length=261

 Score =  217 bits (552),  Expect = 2e-56
 Identities = 112/147 (76%), Positives = 121/147 (82%), Gaps = 0/147 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKG+KG K   VDPF+  DWYDIKAP+ F+VRN GKTL SRT GT  ASEG
Sbjct  1    MAVGKNKRISKGRKGSKKKTVDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED AYRK+RLRAEDVQG+NVLTNFWGM FTTDKLRSLV+KWQTL
Sbjct  61   LKHRVFEVSLADLQNDEDQAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            IEAHVDVKTTDNY LR+FCIG    RP
Sbjct  121  IEAHVDVKTTDNYMLRLFCIGFTKRRP  147


>gi|217903|dbj|BAA00860.1|  cyc07 [Catharanthus roseus]
Length=245

 Score =  216 bits (550),  Expect = 3e-56
 Identities = 115/146 (78%), Positives = 123/146 (84%), Gaps = 0/146 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK  A DPFA  DWYDIKAPS F+VRN GKTL +RT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            L+H VFEISLADL  DED ++RKIRLRAED+QGKNVLTNFWGMDFTTDKLRSLVRKWQ+L
Sbjct  61   LEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXR  483
            IEAHVDVKTTD+YTLRMFCIG    R
Sbjct  121  IEAHVDVKTTDSYTLRMFCIGFTKKR  146


>gi|1350983|sp|P33444|RS3A_CATRO  40S ribosomal protein S3a (CYC07 protein)
Length=260

 Score =  216 bits (550),  Expect = 3e-56
 Identities = 115/146 (78%), Positives = 123/146 (84%), Gaps = 0/146 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK  A DPFA  DWYDIKAPS F+VRN GKTL +RT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            L+H VFEISLADL  DED ++RKIRLRAED+QGKNVLTNFWGMDFTTDKLRSLVRKWQ+L
Sbjct  61   LEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXR  483
            IEAHVDVKTTD+YTLRMFCIG    R
Sbjct  121  IEAHVDVKTTDSYTLRMFCIGFTKKR  146


>gi|76262913|gb|ABA41527.1| UniGene info cyc07 [Nicotiana tabacum]
Length=261

 Score =  216 bits (549),  Expect = 4e-56
 Identities = 113/147 (76%), Positives = 123/147 (83%), Gaps = 0/147 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK  A DP+A  DWYDIKAPS F+++N GKTL +RT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGGKKKAADPYAKKDWYDIKAPSVFDIKNVGKTLVTRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED ++RKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLV+KWQTL
Sbjct  61   LKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            IEAHVDVKTTD+YTLRMFCI     RP
Sbjct  121  IEAHVDVKTTDSYTLRMFCIAFTKKRP  147


>gi|81074465|gb|ABB55367.1|  cyc07-like [Solanum tuberosum]
 gi|82400110|gb|ABB72794.1|  cyc07-like protein [Solanum tuberosum]
Length=261

 Score =  213 bits (542),  Expect = 3e-55
 Identities = 114/147 (77%), Positives = 121/147 (82%), Gaps = 0/147 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK  A DP+A  DWYDIKAPS F ++N GKTL +RT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGGKKKAADPYAKKDWYDIKAPSVFEIKNVGKTLVTRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED AYRKIRLRAEDVQG+NVLTNF GMDFTTDKLRSLVRKWQTL
Sbjct  61   LKHRVFEVSLADLQKDEDQAYRKIRLRAEDVQGRNVLTNFHGMDFTTDKLRSLVRKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            IEAHVDVKTTD+YTLRMFCI     RP
Sbjct  121  IEAHVDVKTTDSYTLRMFCIAFTKKRP  147


>gi|32401367|gb|AAP80855.1| UniGene infoGene info cyc07 [Triticum aestivum]
Length=242

 Score =  212 bits (540),  Expect = 5e-55
 Identities = 114/147 (77%), Positives = 116/147 (78%), Gaps = 0/147 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKG+KG K  AVDPF    WYDIKAP  F  RN GKTL SRT GT  ASEG
Sbjct  1    MAVGKNKRISKGRKGSKKKAVDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED AYRKIRLRAEDVQG NVLTNFWGMDFTTDKLRSLVRKWQTL
Sbjct  61   LKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGMNVLTNFWGMDFTTDKLRSLVRKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            IEAHVDVKTTDNY LRMF IG    RP
Sbjct  121  IEAHVDVKTTDNYMLRMFAIGFTKRRP  147


>gi|1350981|sp|P49396|RS3A_BRARA  40S ribosomal protein S3a (S phase-specific protein BIS289)
 gi|387909|gb|AAA33013.1|  S-phase-specific protein
 gi|397401|emb|CAA81030.1|  unnamed protein product [Brassica rapa]
Length=262

 Score =  212 bits (540),  Expect = 5e-55
 Identities = 113/146 (77%), Positives = 119/146 (81%), Gaps = 0/146 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKG+KGGK   VDPFA  DWYDIKAPS F  RN GKTL SRT GT  ASEG
Sbjct  1    MAVGKNKRISKGRKGGKKKIVDPFAKKDWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED AYRKIRLRAEDVQG+NVLT FWGMDFTTDKLRSLV+KWQTL
Sbjct  61   LKHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXR  483
            IE+HVDVKTTDNYTLR+FCI     R
Sbjct  121  IESHVDVKTTDNYTLRLFCIAFTKRR  146


>gi|6714564|dbj|BAA89498.1|  cyc07 [Daucus carota]
Length=261

 Score =  212 bits (540),  Expect = 5e-55
 Identities = 115/146 (78%), Positives = 120/146 (82%), Gaps = 0/146 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK  A DPFA  DWYDIKAP+ F  +N GKTL SRT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+ LADL  DED AYRKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKWQTL
Sbjct  61   LKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXR  483
            IEAHVDVKTTD+YTLRMFCIG    R
Sbjct  121  IEAHVDVKTTDSYTLRMFCIGFTKKR  146


>gi|82623437|gb|ABB87133.1|  40S ribosomal protein S3a-like [Solanum tuberosum]
Length=261

 Score =  211 bits (538),  Expect = 8e-55
 Identities = 113/147 (76%), Positives = 121/147 (82%), Gaps = 0/147 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK  A DP+A  DWYDIKAPS F ++N GKTL +RT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGGKKKAADPYAKKDWYDIKAPSVFEIKNVGKTLVTRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED A+RKIRLRAEDVQG+NVLTNF GMDFTTDKLRSLVRKWQTL
Sbjct  61   LKHRVFEVSLADLQKDEDQAFRKIRLRAEDVQGRNVLTNFHGMDFTTDKLRSLVRKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            IEAHVDVKTTD+YTLRMFCI     RP
Sbjct  121  IEAHVDVKTTDSYTLRMFCIAFTKKRP  147


>gi|82400124|gb|ABB72801.1|  40S ribosomal protein S3a-like protein [Solanum tuberosum]
Length=260

 Score =  211 bits (538),  Expect = 8e-55
 Identities = 113/147 (76%), Positives = 122/147 (82%), Gaps = 0/147 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK  A DP+A  DWYDIKAPS F VRN GKTL +RT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGGKKKAADPYAKKDWYDIKAPSVFGVRNVGKTLVTRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED ++RKIRLRAEDVQG+NVLTNF GMDFTTDKLRSLV+KWQ+L
Sbjct  61   LKHRVFEVSLADLQNDEDHSFRKIRLRAEDVQGRNVLTNFHGMDFTTDKLRSLVKKWQSL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            IEAHVDVKTTD+YTLRMFCIG    RP
Sbjct  121  IEAHVDVKTTDSYTLRMFCIGFTKKRP  147


>gi|1350984|sp|P49198|RS3A_HELAN  40S ribosomal protein S3a
 gi|469248|gb|AAA80978.1| UniGene info ribosomal protein S3a
Length=260

 Score =  211 bits (538),  Expect = 8e-55
 Identities = 113/146 (77%), Positives = 120/146 (82%), Gaps = 0/146 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK  A DPF+  DWYDIKAPS F  RN GKTL +RT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSLFITRNVGKTLVTRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED +YRKIRLRAEDVQGKNVLTNFWGMD TTDKLRSLV+KWQ+L
Sbjct  61   LKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXR  483
            IEAHVDVKTTDN+TLRMFCIG    R
Sbjct  121  IEAHVDVKTTDNFTLRMFCIGFTKKR  146


>gi|15236171|ref|NP_195193.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|19884297|sp|Q42262|RS3A2_ARATH Gene info 40S ribosomal protein S3a-2
 gi|2661422|emb|CAA04689.1| UniGene infoGene info Putative S-phase-specific ribosomal protein [Arabidopsis thaliana]
 gi|3096936|emb|CAA18846.1| Gene info Putative S-phase-specific ribosomal protein [Arabidopsis thaliana]
 gi|7270417|emb|CAB80184.1| Gene info Putative S-phase-specific ribosomal protein [Arabidopsis thaliana]
 gi|17064848|gb|AAL32578.1| UniGene infoGene info Putative S-phase-specific ribosomal protein [Arabidopsis thaliana]
Length=262

 Score =  211 bits (537),  Expect = 1e-54
 Identities = 112/146 (76%), Positives = 118/146 (80%), Gaps = 0/146 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKG+KGGK  AVDPF+  DWYD+KAP  F  RN GKTL SRT GT  ASEG
Sbjct  1    MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED AYRKIRLRAEDVQG+NVLT FWGMDFTTDKLRSLV+KWQTL
Sbjct  61   LKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXR  483
            IEAHVDVKTTD YTLRMFCI     R
Sbjct  121  IEAHVDVKTTDGYTLRMFCIAFTKRR  146


>gi|81074079|gb|ABB55362.1|  cyc07-like [Solanum tuberosum]
 gi|82400152|gb|ABB72815.1|  cyc07-like protein [Solanum tuberosum]
Length=261

 Score =  210 bits (535),  Expect = 2e-54
 Identities = 112/147 (76%), Positives = 121/147 (82%), Gaps = 0/147 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK  A DP+A  DWYDIKAPS F ++N GKTL +RT GT  AS+G
Sbjct  1    MAVGKNKRISKGKKGGKKKAADPYAKKDWYDIKAPSVFEIKNVGKTLVTRTQGTKIASDG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED A+RKIRLRAEDVQG+NVLTNF GMDFTTDKLRSLVRKWQTL
Sbjct  61   LKHRVFEVSLADLQKDEDQAFRKIRLRAEDVQGRNVLTNFHGMDFTTDKLRSLVRKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            IEAHVDVKTTD+YTLRMFCI     RP
Sbjct  121  IEAHVDVKTTDSYTLRMFCIAFTKKRP  147


>gi|15229364|ref|NP_187135.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|75308953|sp|Q9CAV0|RS3A1_ARATH Gene info 40S ribosomal protein S3a-1
 gi|12322852|gb|AAG51414.1|AC009465_14 Gene info putative 40S ribosomal protein S3A (S phase specific); 75194-73527 
[Arabidopsis thaliana]
 gi|17065440|gb|AAL32874.1| UniGene infoGene info putative 40S ribosomal protein S3A (S phase specific) [Arabidopsis 
thaliana]
 gi|20148513|gb|AAM10147.1| UniGene infoGene info putative 40S ribosomal protein S3A (S phase specific) [Arabidopsis 
thaliana]
 gi|21553921|gb|AAM63004.1| UniGene infoGene info putative 40S ribosomal protein S3A (S phase specific) [Arabidopsis 
thaliana]
Length=262

 Score =  209 bits (533),  Expect = 3e-54
 Identities = 111/146 (76%), Positives = 119/146 (81%), Gaps = 0/146 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKG+KGGK  AVDPF+  DWYD+KAPS F  RN GKTL SRT GT  ASEG
Sbjct  1    MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEG  60

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            LKH VFE+SLADL  DED AYRKIRLRAEDVQG+NVL  FWGMDFTTDKLRSLV+KWQTL
Sbjct  61   LKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTL  120

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXR  483
            IEAHVDVKTTD+YTLR+FCI     R
Sbjct  121  IEAHVDVKTTDSYTLRLFCIAFTKRR  146


>gi|61807078|gb|AAX55706.1| UniGene info cyc07 [Vitis vinifera]
Length=237

 Score =  207 bits (528),  Expect = 1e-53
 Identities = 103/118 (87%), Positives = 104/118 (88%), Gaps = 0/118 (0%)
 Frame = +1

Query  112  PFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEGLKHXVFEISLADLXXDEDXAYR  291
            PFA  DWYDIKAPS F+VRN GKTL SRT GT  ASEGLKH V  ISLADL  DED AYR
Sbjct  1    PFAKKDWYDIKAPSIFSVRNVGKTLVSRTQGTKIASEGLKHRVSGISLADLQNDEDRAYR  60

Query  292  KIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCI  465
            KIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCI
Sbjct  61   KIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCI  118


>gi|82400138|gb|ABB72808.1|  cyc07-like protein [Solanum tuberosum]
Length=260

 Score =  198 bits (504),  Expect = 7e-51
 Identities = 96/124 (77%), Positives = 105/124 (84%), Gaps = 0/124 (0%)
 Frame = +1

Query  115  FAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEGLKHXVFEISLADLXXDEDXAYRK  294
            +A  DWYDIKAPS F ++N GKTL +RT GT  AS+GLKH VFE+SLADL  DED A+RK
Sbjct  23   YAKKDWYDIKAPSVFEIKNVGKTLVTRTQGTKIASDGLKHRVFEVSLADLQKDEDQAFRK  82

Query  295  IRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGXX  474
            IRLRAEDVQG+NVLTNF GMDFTTDKLRSLVRKWQTLIEAHVDVKTTD+YTLRMFCI   
Sbjct  83   IRLRAEDVQGRNVLTNFHGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIAFT  142

Query  475  XXRP  486
              RP
Sbjct  143  KKRP  146


>gi|17369860|sp|Q9XEG7|RS3A_TORRU  40S ribosomal protein S3a
 gi|4574210|gb|AAD23952.1|AF093109_1  ribosomal protein S3 [Tortula ruralis]
Length=248

 Score =  183 bits (464),  Expect = 3e-46
 Identities = 101/147 (68%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK   VDPF+  DWYDIKAP        G+    RT GT  AS+G
Sbjct  1    MAVGKDKRISKGKKGGKKKIVDPFSKKDWYDIKAPPRSRRARSGRRCH-RTAGTKIASDG  59

Query  226  LKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTL  405
            L   VFE+SLADL  DED A+RKI+LRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQ+L
Sbjct  60   LNFRVFEVSLADLQNDEDQAFRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSL  119

Query  406  IEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            I+AHVDVKTTDNY +R+FCI     RP
Sbjct  120  IQAHVDVKTTDNYQIRIFCIAFTKKRP  146


>gi|91940160|gb|ABE66401.1|  S phase protein [Striga asiatica]
Length=190

 Score =  159 bits (402),  Expect = 5e-39
 Identities = 77/93 (82%), Positives = 82/93 (88%), Gaps = 0/93 (0%)
 Frame = +1

Query  205  TXXASEGLKHXVFEISLADLXXDEDXAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSL  384
            T  ASEGLKH VFE+SLADL  DED ++RKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSL
Sbjct  1    TKIASEGLKHRVFEVSLADLQGDEDHSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSL  60

Query  385  VRKWQTLIEAHVDVKTTDNYTLRMFCIGXXXXR  483
            VRKWQ+LIEAHVDVKTTDNYTLR+FCI     R
Sbjct  61   VRKWQSLIEAHVDVKTTDNYTLRLFCIAFTKKR  93


>gi|109390473|gb|ABG33775.1|  ribosomal S3a [Musa acuminata]
Length=94

 Score =  101 bits (251),  Expect = 1e-21
 Identities = 46/58 (79%), Positives = 50/58 (86%), Gaps = 0/58 (0%)
 Frame = +1

Query  313  DVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGXXXXRP  486
            DVQGKNVLTNFWGM+ TTDK+R +VR+W TLIEAHVDVKTTDNYTLRMFCI     RP
Sbjct  1    DVQGKNVLTNFWGMNLTTDKVRYIVRRWLTLIEAHVDVKTTDNYTLRMFCIAFTKRRP  58


>gi|22759731|dbj|BAC10914.1|  putative 40S ribosomal protein S3A [Zinnia elegans]
Length=66

 Score = 80.1 bits (196),  Expect = 4e-15
 Identities = 48/66 (72%), Positives = 50/66 (75%), Gaps = 0/66 (0%)
 Frame = +1

Query  46   MAVGXXXXISkgkkggkxxAVDPFAXXDWYDIKAPSXFNVRNXGKTLXSRTXGTXXASEG  225
            MAVG    ISKGKKGGK  AVDPFA  DWYDIKAPS F+ RN GKTL +RT GT  ASEG
Sbjct  1    MAVGKNKRISKGKKGGKKKAVDPFAKKDWYDIKAPSLFSTRNVGKTLVTRTQGTKIASEG  60

Query  226  LKHXVF  243
            LKH VF
Sbjct  61   LKHRVF  66


>gi|116056281|emb|CAL56664.1|  Mitochondrial processing peptidase, beta subunit, and related 
enzymes (insulinase superfamily) (ISS) [Ostreococcus tauri]
Length=855

 Score = 47.0 bits (110),  Expect(2) = 7e-10
 Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 0/84 (0%)
 Frame = -3

Query  465  NTEHPQRVIISGLHIDMCLDESLPLPH*RSKLVSRKIHSPEVCEHIFPLNILSTKPDLSV  286
            + EH Q V I  L +D  LDE  PL + R+ L+  ++H+ +V + I  L++ + +  L+ 
Sbjct  597  DAEHSQGVAIRRLDVDEALDEGEPLANERADLIRGEVHAGKVGQDILALHVFALELHLAE  656

Query  285  SXVLIXXKVG*RNFKHXVLQTLRR  214
              + +  ++G R+ +   LQ++ R
Sbjct  657  RLIFVVVQIGERDLEDATLQSVGR  680


 Score = 35.4 bits (80),  Expect(2) = 7e-10
 Identities = 29/95 (30%), Positives = 32/95 (33%), Gaps = 39/95 (41%)
 Frame = -1

Query  206  VPXVLEXRVFPXFLTLKXEGALMSYQSXXAKGST--------------------------  105
            VP V    V P FLT    GALMSYQS    GST                          
Sbjct  707  VPCVRVTSVLPMFLTENMLGALMSYQSFFVNGSTLRSSRARTQSVIRRAANPRGSTRVVK  766

Query  104  -------------AXXFPPFFPLEIXXXLPTAMSV  39
                         A   PPF PL++   LP A+ V
Sbjct  767  RSRRARARPPTTYAFFLPPFLPLDMRLFLPCAIGV  801


>gi|108708366|gb|ABF96161.1|  hypothetical protein LOC_Os03g25364 [Oryza sativa (japonica cultivar-group)]
Length=279

 Score = 28.9 bits (63),  Expect = 9.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 0/29 (0%)
 Frame = +3

Query  345  LGNGFYD*QA*IFSAEVANSHRGTCRCED  431
            L NGF++  + ++ AE A  +R TCRC D
Sbjct  76   LRNGFHEVGSRLWQAESAQENRRTCRCCD  104







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 11, 2007  5:57 PM
  Number of letters in database: 101,016,998
  Number of sequences in database:  283,237
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283237
Number of Hits to DB: 268
Number of extensions: 1
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 488
Length of database: 101016998
Length adjustment: 104
Effective length of query: 384
Effective length of database: 71560350
Effective search space: 4150500300
Effective search space used: 4150500300
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)