Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168859042-26068-67894325214.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig56 Length=530
Score E Sequences producing significant alignments: (Bits) Value gi|78103292|ref|YP_358625.1| ribosomal protein L23 [Phalaenop... 186 4e-47 gi|75755702|ref|YP_319806.1| ribosomal protein L23 [Acorus ca... 182 6e-46 gi|50346826|ref|YP_053197.1| ribosomal protein L23 [Nymphaea ... 182 6e-46 gi|116617150|ref|YP_817525.1| ribosomal protein L23 [Coffea a... 181 1e-45 gi|114330012|ref|YP_740693.1| ribosomal protein L23 [Nandina ... 181 2e-45 gi|115605064|ref|YP_784516.1| ribosomal protein L23 [Piper ce... 179 4e-45 gi|115391943|ref|YP_778532.1| ribosomal protein L23 [Jasminum... 179 4e-45 gi|114329790|ref|YP_740608.1| ribosomal protein L23 [Platanus... 179 5e-45 gi|68164846|ref|YP_247642.1| ribosomal protein L23 [Cucumis s... 178 9e-45 gi|108802683|ref|YP_636341.1| ribosomal protein L23 [Eucalypt... 177 1e-44 gi|110588826|gb|ABG76912.1| ribosomal protein L23 [Fragaria x an 176 3e-44 gi|11465999|ref|NP_054541.1| ribosomal protein L23 [Nicotiana... 176 4e-44 gi|110456663|gb|ABG74782.1| ribosomal protein L23 [Jasminum lera 176 6e-44 gi|34500956|ref|NP_904141.1| ribosomal protein L23 [Amborella... 176 6e-44 gi|7525075|ref|NP_051100.1| ribosomal protein L23 [Arabidopsi... 176 6e-44 gi|114107175|ref|YP_740160.1| ribosomal protein L23 [Daucus c... 175 7e-44 gi|110588834|gb|ABG76919.1| ribosomal protein L23 [Prunus persic 175 7e-44 gi|52220852|ref|YP_087008.1| ribosomal protein L23 [Panax gin... 174 2e-43 gi|13518376|ref|NP_084735.1| ribosomal protein L23 [Oenothera... 174 2e-43 gi|11245|emb|CAA47045.1| rpl23 [Arabidopsis thaliana] 173 3e-43 gi|32480885|ref|NP_862796.1| ribosomal protein L23 [Calycanth... 172 8e-43 gi|114329697|ref|YP_740518.1| ribosomal protein L23 [Citrus s... 171 1e-42 gi|11467236|ref|NP_043068.1| ribosomal protein L23 [Zea mays]... 170 2e-42 gi|114107088|ref|YP_740244.1| ribosomal protein L23 [Lirioden... 170 3e-42 gi|91208942|ref|YP_538977.1| ribosomal protein L23 [Gossypium... 170 3e-42 gi|11466832|ref|NP_039429.1| ribosomal protein L23 [Oryza sat... 169 4e-42 gi|110227121|ref|YP_665600.1| ribosomal protein L23 [Populus ... 169 7e-42 gi|22725678|gb|AAN04885.1| ribosomal protein L23 [Vigna angul... 169 7e-42 gi|94502533|ref|YP_588160.1| ribosomal protein L23 [Helianthu... 168 9e-42 gi|118430344|ref|YP_874779.1| ribosomal protein L23 [Agrostis... 168 1e-41 gi|114804306|ref|YP_762303.1| ribosomal protein L23 [Morus in... 167 2e-41 gi|91214182|ref|YP_538806.1| ribosomal protein L23 [Glycine m... 167 2e-41 gi|19920147|gb|AAM08579.1|AC092750_13 Putative ribosomal prot... 167 2e-41 gi|81176294|ref|YP_398371.1| chloroplast 50S ribosomal protei... 167 3e-41 gi|710565|gb|AAA84593.1| ribosomal protein L23 [Oryza sativa]... 165 1e-40 gi|118430311|ref|YP_874745.1| ribosomal protein L23 [Agrostis... 162 8e-40 gi|13518479|ref|NP_084838.1| ribosomal protein L23 [Lotus cor... 162 8e-40 gi|118614501|ref|YP_899416.1| ribosomal protein L23 [Sorghum ... 153 4e-37 gi|115531942|ref|YP_784097.1| ribosomal protein L23 [Pelargon... 147 2e-35 gi|132807|sp|P18664|RK23_SPIOL Putative chloroplast 50S ribosoma 145 1e-34 gi|70609340|gb|AAZ04905.1| ribosomal protein L2 [Yucca schidiger 130 4e-30 gi|119368540|ref|YP_913228.1| ribosomal protein L2 [Gossypium... 128 1e-29 gi|91208941|ref|YP_538976.1| ribosomal protein L2 [Gossypium ... 128 1e-29 gi|114329789|ref|YP_740607.1| ribosomal protein L2 [Platanus ... 127 2e-29 gi|114329696|ref|YP_740517.1| ribosomal protein L2 [Citrus si... 127 2e-29 gi|68164845|ref|YP_247641.1| ribosomal protein L2 [Cucumis sa... 127 2e-29 gi|57013885|ref|YP_173359.1| hypothetical protein NitaMp011 [... 126 4e-29 gi|132863|sp|P27107|RK2_SINAL Chloroplast 50S ribosomal prote... 126 4e-29 gi|11465998|ref|NP_054540.1| ribosomal protein L2 [Nicotiana ... 126 4e-29 gi|132861|sp|P21434|RK2_NICDE Chloroplast 50S ribosomal protein 126 4e-29 gi|116617149|ref|YP_817524.1| ribosomal protein L2 [Coffea ar... 125 7e-29 gi|116617172|ref|YP_817545.1| ribosomal protein L2 [Coffea ar... 125 7e-29 gi|68052867|sp|Q589A7|RK2_SILLA Chloroplast 50S ribosomal pro... 125 7e-29 gi|121720655|ref|YP_001001576.1| ribosomal protein L2 [Nuphar... 125 9e-29 gi|115604975|ref|YP_784428.1| ribosomal protein L2 [Drimys gr... 125 9e-29 gi|70609334|gb|AAZ04902.1| ribosomal protein L2 [Nuphar advena] 125 9e-29 gi|91214205|ref|YP_538827.1| ribosomal protein L2 [Glycine ma... 125 9e-29 gi|91214181|ref|YP_538805.1| ribosomal protein L2 [Glycine ma... 125 9e-29 gi|28261758|ref|NP_783272.1| ribosomal protein L2 [Atropa bel... 125 9e-29 gi|28261783|ref|NP_783296.1| ribosomal protein L2 [Atropa bel... 125 9e-29 gi|110588825|gb|ABG76911.1| ribosomal protein L2 [Fragaria x ana 125 1e-28 gi|34500955|ref|NP_904140.1| ribosomal protein L2 [Amborella ... 125 1e-28 gi|110227141|ref|YP_665619.1| ribosomal protein L2 [Populus a... 124 2e-28 gi|110227120|ref|YP_665599.1| ribosomal protein L2 [Populus a... 124 2e-28 gi|7525074|ref|NP_051099.1| ribosomal protein L2 [Arabidopsis... 124 2e-28 gi|91984033|ref|YP_567119.1| ribosomal protein L2 [Vitis vini... 124 2e-28 gi|78103302|ref|YP_358647.1| ribosomal protein L2 [Phalaenops... 124 2e-28 gi|78103291|ref|YP_358624.1| ribosomal protein L2 [Phalaenops... 124 2e-28 gi|32480884|ref|NP_862795.1| ribosomal protein L2 [Calycanthu... 124 2e-28 gi|81176293|ref|YP_398370.1| ribosomal protein L2 [Lactuca sa... 124 3e-28 gi|114107087|ref|YP_740243.1| ribosomal protein L2 [Liriodend... 123 3e-28 gi|115391942|ref|YP_778531.1| ribosomal protein L2 [Jasminum ... 123 4e-28 gi|114804305|ref|YP_762302.1| ribosomal protein L2 [Morus ind... 123 4e-28 gi|114330011|ref|YP_740692.1| ribosomal protein L2 [Nandina d... 122 6e-28 gi|70609330|gb|AAZ04900.1| ribosomal protein L2 [Acorus american 122 7e-28 gi|75755701|ref|YP_319805.1| ribosomal protein L2 [Acorus cal... 122 7e-28 gi|52220851|ref|YP_087007.1| ribosomal protein L2 [Panax gins... 122 7e-28 gi|114107111|ref|YP_740266.1| ribosomal protein L2 [Liriodend... 122 1e-27 gi|13752253|gb|AAK37783.1| ribosomal protein L2 [Populus deltoid 122 1e-27 gi|108802682|ref|YP_636340.1| ribosomal protein L2 [Eucalyptu... 122 1e-27 gi|70609338|gb|AAZ04904.1| ribosomal protein L2 [Typha latifolia 121 1e-27 gi|50346825|ref|YP_053196.1| ribosomal protein L2 [Nymphaea a... 121 1e-27 gi|114107174|ref|YP_740159.1| ribosomal protein L2 [Daucus ca... 121 2e-27 gi|94502532|ref|YP_588159.1| ribosomal protein L2 [Helianthus... 121 2e-27 gi|70609336|gb|AAZ04903.1| ribosomal protein L2 [Ranunculus macr 120 2e-27 gi|115605063|ref|YP_784515.1| ribosomal protein L2 [Piper cen... 120 4e-27 gi|110588833|gb|ABG76918.1| ribosomal protein L2 [Prunus persica 119 8e-27 gi|11466971|ref|NP_054392.1| ribosomal protein L2 [Epifagus v... 117 2e-26 gi|42559265|sp|Q8LVH2|RK2_PHAAN Chloroplast 50S ribosomal pro... 117 2e-26 gi|115531943|ref|YP_784098.1| ribosomal protein L2 [Pelargoni... 115 7e-26 gi|577558|emb|CAA55028.1| rpl 2 [Hordeum vulgare subsp. vulgare] 114 2e-25 gi|6093984|sp|O62961|RK23_PICAB Chloroplast 50S ribosomal pro... 114 2e-25 gi|13518375|ref|NP_084734.1| ribosomal protein L2 [Oenothera ... 114 2e-25 gi|2769663|gb|AAD15254.1| ribosomal protein L2 [Oryza sativa] 114 2e-25 gi|1213600|emb|CAA33924.1| ribosomal protein L2 [Oryza sativa... 114 2e-25 gi|13518478|ref|NP_084837.1| ribosomal protein L2 [Lotus corn... 114 3e-25 gi|3900977|emb|CAA37241.1| ribosomal protein L2 [Zea mays] 113 3e-25 gi|1334381|emb|CAA43983.1| large ribosomal protein 2 [Zea mays] 113 3e-25 gi|118430343|ref|YP_874778.1| ribosomal protein L2 [Agrostis ... 112 6e-25 gi|25992902|gb|AAN77249.1| ribosomal protein L2 [Oryza sativa] 112 8e-25
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 11, 2007 5:57 PM Number of letters in database: 101,016,998 Number of sequences in database: 283,237 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283237 Number of Hits to DB: 338 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 530 Length of database: 101016998 Length adjustment: 106 Effective length of query: 424 Effective length of database: 70993876 Effective search space: 4969571320 Effective search space used: 4969571320 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)