RID=1168859054-27264-140058055009.BLASTQ1, Contig57

Alignments
 

>gi|18652180|gb|AAL76994.1|  RNA binding protein [Elaeis oleifera]
Length=218

 Score =  224 bits (572),  Expect = 1e-58
 Identities = 129/134 (96%), Positives = 130/134 (97%), Gaps = 0/134 (0%)
 Frame = +1

Query  148  SSQLSISRRTNESSDFLPLEGGPGRRISEPEEPVKETATVLYIGHIPHgfyeeqmqgffq  327
            SSQLSISRRTNESSDFLPLEGGPGRRI+EPEEPVKETATVLYIGHIPHGFYEEQMQGFFQ
Sbjct  17   SSQLSISRRTNESSDFLPLEGGPGRRIAEPEEPVKETATVLYIGHIPHGFYEEQMQGFFQ  76

Query  328  qfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERV  507
            QFGKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERV
Sbjct  77   QFGKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERV  136

Query  508  HPKLWKGVXRXXKP  549
            HPKL KGV R  KP
Sbjct  137  HPKLVKGVNRRFKP  150


>gi|46367676|emb|CAE00870.1|  TA8 protein [Oryza sativa (japonica cultivar-group)]
Length=197

 Score =  168 bits (425),  Expect = 1e-41
 Identities = 97/133 (72%), Positives = 113/133 (84%), Gaps = 4/133 (3%)
 Frame = +1

Query  160  SISRRTNESSDFLPLEGGPGR---RISEPEEPVKETATVLYIGHIPHgfyeeqmqgffqq  330
            S + R+ E  DFLPLE  PG+   R  +PEEP + T+TVLYIGHIPHGFYEEQMQGFFQQ
Sbjct  18   SAAPRSGEGKDFLPLEERPGKKRAREEQPEEP-ENTSTVLYIGHIPHGFYEEQMQGFFQQ  76

Query  331  fgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERVH  510
            FG +KRLRI+RNRKTGKSKHYGF+EFENPEVAK+VADEMNNYLLFEH LQ++++PPE++H
Sbjct  77   FGTVKRLRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAIVPPEKIH  136

Query  511  PKLWKGVXRXXKP  549
            PKLWKGV R   P
Sbjct  137  PKLWKGVRRGFIP  149


>gi|115476394|ref|NP_001061793.1|  Os08g0412200 [Oryza sativa (japonica cultivar-group)]
 gi|37806189|dbj|BAC99692.1|  putative RNA binding protein [Oryza sativa (japonica cultivar-group)]
 gi|113623762|dbj|BAF23707.1|  Os08g0412200 [Oryza sativa (japonica cultivar-group)]
Length=214

 Score =  168 bits (425),  Expect = 1e-41
 Identities = 97/133 (72%), Positives = 113/133 (84%), Gaps = 4/133 (3%)
 Frame = +1

Query  160  SISRRTNESSDFLPLEGGPGR---RISEPEEPVKETATVLYIGHIPHgfyeeqmqgffqq  330
            S + R+ E  DFLPLE  PG+   R  +PEEP + T+TVLYIGHIPHGFYEEQMQGFFQQ
Sbjct  18   SAAPRSGEGKDFLPLEERPGKKRAREEQPEEP-ENTSTVLYIGHIPHGFYEEQMQGFFQQ  76

Query  331  fgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERVH  510
            FG +KRLRI+RNRKTGKSKHYGF+EFENPEVAK+VADEMNNYLLFEH LQ++++PPE++H
Sbjct  77   FGTVKRLRIARNRKTGKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAIVPPEKIH  136

Query  511  PKLWKGVXRXXKP  549
            PKLWKGV R   P
Sbjct  137  PKLWKGVRRGFIP  149


>gi|82623439|gb|ABB87134.1|  RNA binding protein-like protein [Solanum tuberosum]
Length=217

 Score =  152 bits (384),  Expect = 7e-37
 Identities = 88/129 (68%), Positives = 108/129 (83%), Gaps = 3/129 (2%)
 Frame = +1

Query  166  SRRTNESSDFLPLEGGPGRRISEPEEPVKET-ATVLYIGHIPHgfyeeqmqgffqqfgKI  342
            S   +E+ +FLPLEGGP +++  P+  +KE  ATVLYIG IPHGFYE +M+GFF+QFG I
Sbjct  25   SASKDEAREFLPLEGGPAQKL--PKTELKENKATVLYIGRIPHGFYENEMEGFFKQFGTI  82

Query  343  KRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERVHPKLW  522
            KRLRI+RN+KTGKSKH+GF+EFE+PEVAKVVA+ M+NYLLFEH LQ+ LIPPE VHP+LW
Sbjct  83   KRLRIARNKKTGKSKHFGFIEFESPEVAKVVAETMHNYLLFEHLLQVQLIPPEHVHPRLW  142

Query  523  KGVXRXXKP  549
            KGV R  KP
Sbjct  143  KGVNRWYKP  151


>gi|15238220|ref|NP_196080.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|14190443|gb|AAK55702.1|AF378899_1  AT5g04600/T32M21_200 [Arabidopsis thaliana]
 gi|7406464|emb|CAB85566.1|  rna binding protein-like [Arabidopsis thaliana]
 gi|15810057|gb|AAL06954.1|  AT5g04600/T32M21_200 [Arabidopsis thaliana]
 gi|17380696|gb|AAL36178.1|  putative rna binding protein [Arabidopsis thaliana]
 gi|21689805|gb|AAM67546.1|  putative RNA binding protein [Arabidopsis thaliana]
Length=222

 Score =  137 bits (345),  Expect = 2e-32
 Identities = 74/134 (55%), Positives = 99/134 (73%), Gaps = 0/134 (0%)
 Frame = +1

Query  148  SSQLSISRRTNESSDFLPLEGGPGRRISEPEEPVKETATVLYIGHIPHgfyeeqmqgffq  327
            SSQL + +    S+DFLPLEGGP R+      P++  ATVLYIG IPHGFYE +++ FF 
Sbjct  22   SSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFS  81

Query  328  qfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERV  507
            QFG +KR+R++RN+KTGKSKH+GF++FE+PEVA++ A  MN+YLL EH L++ +I PE V
Sbjct  82   QFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYLLMEHMLKVHVIEPENV  141

Query  508  HPKLWKGVXRXXKP  549
             P LW+G     KP
Sbjct  142  KPNLWRGFKCNFKP  155


>gi|116057832|emb|CAL54035.1|  Myosin class II heavy chain (ISS) [Ostreococcus tauri]
Length=1763

 Score =  103 bits (256),  Expect = 5e-22
 Identities = 60/125 (48%), Positives = 87/125 (69%), Gaps = 5/125 (4%)
 Frame = +1

Query  172   RTNESSDFLPLEGGPGRRISEPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRL  351
             R  ++ D +PL      R S+ + P      V+Y+GH+PHGFYE QM+ +F QFG + R+
Sbjct  1564  RMAKTGDVIPLADAKPSRKSKKDLP-----RVIYVGHVPHGFYETQMREYFGQFGDVTRV  1618

Query  352   RISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERVHPKLWKGV  531
             ++SRN+KTG+SKHY F+EF++PEVA +VA+ MNNYLL    L+++LI PE+VHPK ++G 
Sbjct  1619  KVSRNKKTGRSKHYAFIEFKHPEVASIVAESMNNYLLANQVLKVTLIEPEKVHPKTFEGT  1678

Query  532   XRXXK  546
                 K
Sbjct  1679  GTKFK  1683


>gi|13877739|gb|AAK43947.1|AF370132_1  unknown protein [Arabidopsis thaliana]
Length=804

 Score = 40.4 bits (93),  Expect = 0.004
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +1

Query  214  PGRRISEPEEPVKE-TATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKH  390
            PG   +  + P KE   T LYIG +P    ++ +   F  FG+I   ++ ++R TG SK 
Sbjct  463  PGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKG  522

Query  391  YGFLEFENPEVAKVVADEMNNY  456
            YGF+++ + ++A      MN Y
Sbjct  523  YGFVKYADVQMANTAVQAMNGY  544


>gi|15241418|ref|NP_199943.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|30696034|ref|NP_851169.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|79330558|ref|NP_001032055.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|8843867|dbj|BAA97393.1|  unnamed protein product [Arabidopsis thaliana]
 gi|23297082|gb|AAN13087.1|  unknown protein [Arabidopsis thaliana]
Length=804

 Score = 40.4 bits (93),  Expect = 0.004
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = +1

Query  214  PGRRISEPEEPVKE-TATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKH  390
            PG   +  + P KE   T LYIG +P    ++ +   F  FG+I   ++ ++R TG SK 
Sbjct  463  PGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKG  522

Query  391  YGFLEFENPEVAKVVADEMNNY  456
            YGF+++ + ++A      MN Y
Sbjct  523  YGFVKYADVQMANTAVQAMNGY  544


>gi|115461392|ref|NP_001054296.1|  Os04g0682400 [Oryza sativa (japonica cultivar-group)]
 gi|113565867|dbj|BAF16210.1|  Os04g0682400 [Oryza sativa (japonica cultivar-group)]
Length=1008

 Score = 40.0 bits (92),  Expect = 0.005
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
 Frame = +1

Query  262  TVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVAD  441
            T LY+ H+P     E++   F   G+I + ++   R TG SK +GF++F +   A V   
Sbjct  784  TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT  843

Query  442  EMNNYLLFEHNLQLSLIPPERVHP  513
             MN Y L  H L++ +     VHP
Sbjct  844  HMNGYPLDGHVLEVRI---AGVHP  864


 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
 Frame = +1

Query  241  EPVKETATV-LYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENP  417
            +P+KE     LY+G +P    E+Q    F+ FG++ + R+ R ++      YG + F+NP
Sbjct  678  KPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQR------YGMVRFDNP  731

Query  418  EVAKVVADEMNNY  456
              A    D ++ Y
Sbjct  732  SCAAAAIDHLDGY  744


>gi|90399074|emb|CAJ86296.1|  H0124B04.13 [Oryza sativa (indica cultivar-group)]
Length=913

 Score = 40.0 bits (92),  Expect = 0.005
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
 Frame = +1

Query  262  TVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVAD  441
            T LY+ H+P     E++   F   G+I + ++   R TG SK +GF++F +   A V   
Sbjct  689  TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT  748

Query  442  EMNNYLLFEHNLQLSLIPPERVHP  513
             MN Y L  H L++ +     VHP
Sbjct  749  HMNGYPLDGHVLEVRI---AGVHP  769


 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
 Frame = +1

Query  241  EPVKETATV-LYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENP  417
            +P+KE     LY+G +P    E+Q    F+ FG++ + R+ R ++      YG + F+NP
Sbjct  583  KPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQR------YGMVRFDNP  636

Query  418  EVAKVVADEMNNY  456
              A    D ++ Y
Sbjct  637  SCAAAAIDHLDGY  649


>gi|38345560|emb|CAE03434.2|  OSJNBa0032F06.17 [Oryza sativa (japonica cultivar-group)]
Length=924

 Score = 40.0 bits (92),  Expect = 0.005
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
 Frame = +1

Query  262  TVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVAD  441
            T LY+ H+P     E++   F   G+I + ++   R TG SK +GF++F +   A V   
Sbjct  700  TNLYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALT  759

Query  442  EMNNYLLFEHNLQLSLIPPERVHP  513
             MN Y L  H L++ +     VHP
Sbjct  760  HMNGYPLDGHVLEVRI---AGVHP  780


 Score = 30.0 bits (66),  Expect = 5.5
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
 Frame = +1

Query  241  EPVKETATV-LYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENP  417
            +P+KE     LY+G +P    E+Q    F+ FG++ + R+ R ++      YG + F+NP
Sbjct  594  KPIKEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQR------YGMVRFDNP  647

Query  418  EVAKVVADEMNNY  456
              A    D ++ Y
Sbjct  648  SCAAAAIDHLDGY  660


>gi|115478330|ref|NP_001062760.1|  Os09g0279500 [Oryza sativa (japonica cultivar-group)]
 gi|49387841|dbj|BAD26506.1|  putative plastid-specific ribosomal protein 2 precursor [Oryza 
sativa (japonica cultivar-group)]
 gi|49388840|dbj|BAD26030.1|  putative plastid-specific ribosomal protein 2 precursor [Oryza 
sativa (japonica cultivar-group)]
 gi|113630993|dbj|BAF24674.1|  Os09g0279500 [Oryza sativa (japonica cultivar-group)]
Length=245

 Score = 39.3 bits (90),  Expect = 0.009
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 0/71 (0%)
 Frame = +1

Query  238  EEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENP  417
            E P +  A  LY+G+IP     +++   F   G ++R  +  ++ TG+S+ +GF+    P
Sbjct  62   EAPEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTP  121

Query  418  EVAKVVADEMN  450
            E A    + +N
Sbjct  122  EEANAAIESLN  132


 Score = 35.8 bits (81),  Expect = 0.10
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
 Frame = +1

Query  172  RTNESSDFLPLEGGPGRRISEPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRL  351
            + N +  FLP      R   EPE    ++   +Y+G++      E ++ FF + G++   
Sbjct  142  KVNVTESFLP---NIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFSEKGEVLSA  198

Query  352  RISRNRKTGKSKHYGFLEFENPEVAKVVADEMNN  453
             +SR   T KSK YGF+ F + E  +      NN
Sbjct  199  TVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNN  232


>gi|115458038|ref|NP_001052619.1|  Os04g0385700 [Oryza sativa (japonica cultivar-group)]
 gi|113564190|dbj|BAF14533.1|  Os04g0385700 [Oryza sativa (japonica cultivar-group)]
Length=469

 Score = 38.9 bits (89),  Expect = 0.012
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +1

Query  199  PLEGGPGRRISEPEEPVKE-TATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKT  375
            P   G G   S      KE   T LYIG++P    +  + G F QFG+I   ++ R+R T
Sbjct  104  PWAAGGGAAASGANGIKKEYDETNLYIGYLPPTLDDSGLIGLFSQFGEIVMAKVIRDRIT  163

Query  376  GKSKHYGFLEFENPEVAKVVADEMNNYLL  462
            G+SK YGF+++ +   A      MN Y L
Sbjct  164  GQSKGYGFVKYSDVSQANAAIAAMNGYHL  192


>gi|32489985|emb|CAE05015.1|  OSJNBa0044M19.2 [Oryza sativa (japonica cultivar-group)]
Length=650

 Score = 38.9 bits (89),  Expect = 0.012
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +1

Query  199  PLEGGPGRRISEPEEPVKE-TATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKT  375
            P   G G   S      KE   T LYIG++P    +  + G F QFG+I   ++ R+R T
Sbjct  285  PWAAGGGAAASGANGIKKEYDETNLYIGYLPPTLDDSGLIGLFSQFGEIVMAKVIRDRIT  344

Query  376  GKSKHYGFLEFENPEVAKVVADEMNNYLL  462
            G+SK YGF+++ +   A      MN Y L
Sbjct  345  GQSKGYGFVKYSDVSQANAAIAAMNGYHL  373


>gi|115463535|ref|NP_001055367.1|  Os05g0373400 [Oryza sativa (japonica cultivar-group)]
 gi|113578918|dbj|BAF17281.1|  Os05g0373400 [Oryza sativa (japonica cultivar-group)]
Length=496

 Score = 38.1 bits (87),  Expect = 0.020
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 0/85 (0%)
 Frame = +1

Query  268  LYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEM  447
            L+I HIP  F ++ + G FQ FG++   ++  ++ TG SK +GF+ +++P  A+     M
Sbjct  412  LFIYHIPQEFGDQDLAGAFQGFGRVLSAKVFVDKATGLSKCFGFISYDSPASAQTAISMM  471

Query  448  NNYLLFEHNLQLSLIPPERVHPKLW  522
            N Y L    L++ L      H K +
Sbjct  472  NGYQLGGKKLKVQLKRDNSKHSKTY  496


>gi|40804404|gb|AAR91698.1|  DNA-binding protein [Lycopersicon esculentum]
Length=428

 Score = 38.1 bits (87),  Expect = 0.020
 Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 0/90 (0%)
 Frame = +1

Query  193  FLPLEGGPGRRISEPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRK  372
            ++P      +++ + ++   E    ++IG +     E  +   F Q G++  +++ RN++
Sbjct  56   YMPYYHQQHQQMIQIQQNASEDNRTIWIGDLQQWMDEGYLHTCFAQAGEVISVKVIRNKQ  115

Query  373  TGKSKHYGFLEFENPEVAKVVADEMNNYLL  462
            TG+S+ YGF+EF   E A+ V    N  ++
Sbjct  116  TGQSERYGFIEFNTHEAAEKVLQSYNGTMM  145


 Score = 32.3 bits (72),  Expect = 1.1
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 0/58 (0%)
 Frame = +1

Query  340  IKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERVHP  513
            +K  ++  +  TG+SK YGF+ F++         EMN        +++ +  P++  P
Sbjct  205  VKGAKVVIDSNTGRSKGYGFVRFDDESERSRAMTEMNGIYCSSRAMRIGVATPKKPSP  262


>gi|15220241|ref|NP_175181.1|  ATRBP47C'; RNA binding [Arabidopsis thaliana]
 gi|5668811|gb|AAD46037.1|AC007519_22  Contains 3 PF|00076 RNA recognition motif domains.  EST gb|T20424 
comes from this gene. [Arabidopsis thaliana]
 gi|110743035|dbj|BAE99410.1|  hypothetical protein [Arabidopsis thaliana]
Length=434

 Score = 37.7 bits (86),  Expect = 0.027
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 0/38 (0%)
 Frame = +1

Query  337  KIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMN  450
            +I  L++ RN+  G S+ YGF+EFE+ +VA  V  E N
Sbjct  130  EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFN  167


>gi|2289001|gb|AAB64330.1|  putative U1 small nuclear ribonucleoprotein 70 kDa [Arabidopsis 
thaliana]
Length=292

 Score = 37.4 bits (85),  Expect = 0.035
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
 Frame = +1

Query  181  ESSDFLPLEGGPGRRI----SEPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKR  348
            + +D  P + G  R +    S   + V +    L++G + H   E+ ++    ++G+IK 
Sbjct  27   DGTDVAPHDNGVRRALLYDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKN  86

Query  349  LRISRNRKTGKSKHYGFLEFE  411
            LR+ R+  TG S+ YGF+E+E
Sbjct  87   LRLVRHIVTGASRGYGFVEYE  107


>gi|99565|pir||S15348  RNA-binding protein, 28K - spinach
Length=233

 Score = 37.4 bits (85),  Expect = 0.035
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
 Frame = +1

Query  187  SDFLPLEGGPGRRISEPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRN  366
            SD   +EGG G   SEP E  K     L++G++P+    E++ G F   G ++   +  N
Sbjct  37   SDEGGVEGGQG--FSEPPEEAK-----LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYN  89

Query  367  RKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPP  498
            R+T +S+ +GF+     E A+   + +N Y +    L ++   P
Sbjct  90   RETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAP  133


>gi|21309|emb|CAA41023.1|  28kD RNA binding protein [Spinacia oleracea]
Length=226

 Score = 37.4 bits (85),  Expect = 0.035
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
 Frame = +1

Query  187  SDFLPLEGGPGRRISEPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRN  366
            SD   +EGG G   SEP E  K     L++G++P+    E++ G F   G ++   +  N
Sbjct  30   SDEGGVEGGQG--FSEPPEEAK-----LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYN  82

Query  367  RKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPP  498
            R+T +S+ +GF+     E A+   + +N Y +    L ++   P
Sbjct  83   RETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAP  126


>gi|133247|sp|P28644|ROC1_SPIOL  28 kDa ribonucleoprotein, chloroplast (28RNP)
Length=233

 Score = 37.4 bits (85),  Expect = 0.035
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
 Frame = +1

Query  187  SDFLPLEGGPGRRISEPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRN  366
            SD   +EGG G   SEP E  K     L++G++P+    E++ G F   G ++   +  N
Sbjct  37   SDEGGVEGGQG--FSEPPEEAK-----LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYN  89

Query  367  RKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPP  498
            R+T +S+ +GF+     E A+   + +N Y +    L ++   P
Sbjct  90   RETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAP  133


>gi|92429673|gb|ABE77206.1|  unknown [Sorghum bicolor]
Length=240

 Score = 37.0 bits (84),  Expect = 0.045
 Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 0/75 (0%)
 Frame = +1

Query  265  VLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADE  444
            V+Y+G+IP    E+++    +  G ++ LR++ +  TGK + Y F+E+ + E A+     
Sbjct  20   VVYVGNIPFHASEKEVHDACELIGPVRSLRLAADPGTGKRRGYAFVEYPDDETARSACRN  79

Query  445  MNNYLLFEHNLQLSL  489
            ++ + L    L++ L
Sbjct  80   LHGHALRGRELRVGL  94


>gi|30693595|ref|NP_566958.3|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|79314769|ref|NP_001030841.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|17979394|gb|AAL49922.1|  unknown protein [Arabidopsis thaliana]
 gi|22136722|gb|AAM91680.1|  unknown protein [Arabidopsis thaliana]
Length=253

 Score = 37.0 bits (84),  Expect = 0.045
 Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 0/70 (0%)
 Frame = +1

Query  241  EPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPE  420
            +P  E A  +YIG+IP     EQ+    ++ G ++++++  ++ +G+S+ +GF   ++ E
Sbjct  69   DPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVE  128

Query  421  VAKVVADEMN  450
             A  V +++N
Sbjct  129  DANAVVEKLN  138


 Score = 30.4 bits (67),  Expect = 4.2
 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +1

Query  199  PLEGGPGRRISEPEEPV-KETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKT  375
            P+   P   + + E+    ++   +Y+G++     +E ++  F + GK+   ++SR   T
Sbjct  155  PIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGT  214

Query  376  GKSKHYGFLEFENPEVAKVVADEMNNYLL  462
             KS  +GF+ F + E  +     +NN LL
Sbjct  215  SKSTGFGFVTFSSEEDVEAAIVALNNSLL  243


>gi|115442121|ref|NP_001045340.1|  Os01g0938200 [Oryza sativa (japonica cultivar-group)]
 gi|20160777|dbj|BAB89718.1|  putative ribonucleoprotein [Oryza sativa (japonica cultivar-group)]
 gi|20161317|dbj|BAB90241.1|  putative ribonucleoprotein [Oryza sativa (japonica cultivar-group)]
 gi|113534871|dbj|BAF07254.1|  Os01g0938200 [Oryza sativa (japonica cultivar-group)]
Length=460

 Score = 37.0 bits (84),  Expect = 0.045
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 0/83 (0%)
 Frame = +1

Query  268  LYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEM  447
            L+I HIP  + ++ +   FQ+FG++   ++  ++ TG SK +GF+ +++P  A+     M
Sbjct  376  LFIYHIPQDYGDQDLSNAFQRFGRVLSAKVFVDKATGSSKCFGFVSYDSPASAQAAIGVM  435

Query  448  NNYLLFEHNLQLSLIPPERVHPK  516
            N + L    L++ L      H K
Sbjct  436  NGFQLGSKKLKVQLKRDNSKHSK  458


>gi|82621116|gb|ABB86246.1|  DNA-binding protein-like [Solanum tuberosum]
Length=423

 Score = 36.6 bits (83),  Expect = 0.059
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 0/38 (0%)
 Frame = +1

Query  349  LRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLL  462
            +++ RN++TG+S+ YGF+EF   E A+ V    N  ++
Sbjct  108  VKVIRNKQTGQSERYGFIEFNTHEAAEKVLQSYNGTMM  145


 Score = 30.8 bits (68),  Expect = 3.2
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 0/55 (0%)
 Frame = +1

Query  340  IKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPER  504
            +K  ++  +  TG+SK YGF+ F++         EMN        +++ +  P++
Sbjct  205  VKGAKVVIDSNTGRSKGYGFVRFDDESERSRAMTEMNGIYCSSRAMRIGVATPKK  259


>gi|30524687|emb|CAC85245.1|  salt tolerance protein 4 [Beta vulgaris]
Length=203

 Score = 36.2 bits (82),  Expect = 0.077
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
 Frame = +1

Query  166  SRRTNESSDFLPLEGGPGRRISEPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIK  345
            SR T    D L  +GGPG     P   ++    ++ +  +     EE +   F +FG++K
Sbjct  74   SRMTAREFDSLDSDGGPG-----PARSIE--GWIILVTGVHEEAQEEDLLNVFGEFGQLK  126

Query  346  RLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQL  483
             L ++ +R+TG  K Y  +E+E  E A+    EMN   + E  + +
Sbjct  127  NLHLNLDRRTGFVKGYALIEYEKFEEAQAAIKEMNGAKMLEQPINV  172


>gi|9663767|emb|CAC01237.1|  RNA Binding Protein 45 [Nicotiana plumbaginifolia]
Length=409

 Score = 36.2 bits (82),  Expect = 0.077
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = +1

Query  268  LYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEM  447
            L+IG + +   E  +   F   G++   ++ RN++TG+S+ YGFLEF +   A+ +    
Sbjct  86   LWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQTY  145

Query  448  NNYLL--FEHNLQLS  486
            N  L+   E N +++
Sbjct  146  NGTLMPNVEQNFRMN  160


>gi|116000790|emb|CAL50470.1|  FOG: RRM domain (ISS) [Ostreococcus tauri]
Length=318

 Score = 35.8 bits (81),  Expect = 0.10
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 0/61 (0%)
 Frame = +1

Query  268  LYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEM  447
            ++IG++P+   E  +   F + G ++ LR+   R TGK K YGF+EF++   A      +
Sbjct  6    VFIGNVPYDATEASLTEIFCECGPVRELRLVTERDTGKLKGYGFVEFDDFATAMSAVRNL  65

Query  448  N  450
            N
Sbjct  66   N  66


>gi|115452253|ref|NP_001049727.1|  Os03g0278500 [Oryza sativa (japonica cultivar-group)]
 gi|108707490|gb|ABF95285.1|  polyadenylate binding protein, types 1, 2, 3, 4 family protein, 
expressed [Oryza sativa (japonica cultivar-group)]
 gi|113548198|dbj|BAF11641.1|  Os03g0278500 [Oryza sativa (japonica cultivar-group)]
Length=647

 Score = 35.8 bits (81),  Expect = 0.10
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 0/40 (0%)
 Frame = +1

Query  367  RKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLS  486
            R  G SK +GF+ F+NPE AK   + MN  LL    L ++
Sbjct  250  RDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVA  289


>gi|92877413|gb|ABE84531.1|  Polyadenylate binding protein, human types 1, 2, 3, 4 [Medicago 
truncatula]
Length=414

 Score = 35.8 bits (81),  Expect = 0.10
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 0/69 (0%)
 Frame = +1

Query  244  PVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEV  423
            P + T T LY+G + H   + Q+   F Q G++  +RI R+  + +S  YG++ F NP  
Sbjct  18   PNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHD  77

Query  424  AKVVADEMN  450
            A    D +N
Sbjct  78   AAKAMDVLN  86


 Score = 35.4 bits (80),  Expect = 0.13
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
 Frame = +1

Query  190  DFLPLEGGPGRRISEPEEPV--KETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISR  363
            +F PL   P R +    +P   K  A  ++I ++      + +   F  FG I   +I+ 
Sbjct  86   NFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAM  145

Query  364  NRKTGKSKHYGFLEFENPEVAKVVADEMNNYLL  462
            +  +G SK YGF++FEN E A+   D++N  LL
Sbjct  146  DA-SGLSKGYGFVQFENEESAQSAIDKLNGMLL  177


>gi|87240837|gb|ABD32695.1|  RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding 
EF-hand [Medicago truncatula]
 gi|92897076|gb|ABE93532.1|  RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding 
EF-hand [Medicago truncatula]
Length=479

 Score = 35.8 bits (81),  Expect = 0.10
 Identities = 17/62 (27%), Positives = 39/62 (62%), Gaps = 0/62 (0%)
 Frame = +1

Query  268  LYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEM  447
            ++IG +P    ++ ++   +  G I  +++ ++R+TG+SK Y F+ ++  EVA+   D++
Sbjct  106  VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI  165

Query  448  NN  453
            +N
Sbjct  166  HN  167


>gi|84453184|dbj|BAE71189.1|  putative DNA binding protein [Trifolium pratense]
Length=253

 Score = 35.8 bits (81),  Expect = 0.10
 Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = +1

Query  199  PLEGGPGRRISEPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTG  378
            P +  P +++ +P     +    L+IG + +   E  +   F   G++  +++ RN++T 
Sbjct  49   PPQSAPPQQLPQPA--TADEVRTLWIGDLQYWMDENYLYQCFSHTGEVGNVKVIRNKQTN  106

Query  379  KSKHYGFLEFENPEVAKVVADEMNNYLL  462
            +S+ YGFLEF +   A+ +  + N  ++
Sbjct  107  QSEGYGFLEFTSRAGAERILQQYNGNIM  134


>gi|110681486|emb|CAL25353.1|  ACBF-like dna binding protein [Platanus x acerifolia]
Length=216

 Score = 35.4 bits (80),  Expect = 0.13
 Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 0/73 (0%)
 Frame = +1

Query  232  EPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFE  411
            + ++ + E    +++G + +      +   F   G++  +++ RN++TG+S+ YGF+EF 
Sbjct  19   QQQQGLTEENKTIWVGDLHYWMDGNYLNNCFAHTGEVISIKVIRNKQTGQSEGYGFVEFF  78

Query  412  NPEVAKVVADEMN  450
            + E A+ V    N
Sbjct  79   SREAAEKVLQNYN  91


>gi|92875390|gb|ABE83383.1|  RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]
Length=454

 Score = 35.4 bits (80),  Expect = 0.13
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 0/70 (0%)
 Frame = +1

Query  253  ETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKV  432
            E    +++G + H   E  +   F   G++   ++ RN++TG+S+ YGF+EF    +A+ 
Sbjct  113  EEIRTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEK  172

Query  433  VADEMNNYLL  462
            V    N  ++
Sbjct  173  VLQNFNGTMM  182


 Score = 29.6 bits (65),  Expect = 7.2
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 0/57 (0%)
 Frame = +1

Query  340  IKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERVH  510
            IK  ++  +  TG+SK YGF+ F +         EMN        +++ +  P++ +
Sbjct  241  IKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKTY  297


>gi|115453241|ref|NP_001050221.1|  Os03g0376600 [Oryza sativa (japonica cultivar-group)]
 gi|18921322|gb|AAL82527.1|AC084766_13  putative ribonucleoprotein [Oryza sativa]
 gi|108708430|gb|ABF96225.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113548692|dbj|BAF12135.1|  Os03g0376600 [Oryza sativa (japonica cultivar-group)]
Length=265

 Score = 35.4 bits (80),  Expect = 0.13
 Identities = 19/77 (24%), Positives = 45/77 (58%), Gaps = 0/77 (0%)
 Frame = +1

Query  268  LYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEM  447
            +++G++P      Q+ G F+Q G ++ + +  ++ TG+S+ +GF+   + E  +   ++ 
Sbjct  88   VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQF  147

Query  448  NNYLLFEHNLQLSLIPP  498
            N Y+L   +L+++  PP
Sbjct  148  NGYILDGRSLRVNSGPP  164


>gi|42571787|ref|NP_973984.1|  ATRBP47C; RNA binding [Arabidopsis thaliana]
Length=310

 Score = 35.4 bits (80),  Expect = 0.13
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 0/38 (0%)
 Frame = +1

Query  337  KIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMN  450
            +I  +++ RN+  G S+ YGF+EFE+ +VA  V  E N
Sbjct  128  EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFN  165


>gi|15220233|ref|NP_175180.1|  ATRBP47C; RNA binding [Arabidopsis thaliana]
 gi|5668812|gb|AAD46038.1|AC007519_23  Contains 3 PF|00076 RNA recognition motif domains.  ESTs gb|R30092, 
gb|R30093, gb|AA394338, gb|N65719 and gb|AA597577 come 
from this gene. [Arabidopsis thaliana]
 gi|12744993|gb|AAK06876.1|AF344325_1  putative DNA binding protein [Arabidopsis thaliana]
 gi|14334552|gb|AAK59684.1|  putative DNA binding protein [Arabidopsis thaliana]
 gi|17065624|gb|AAL33806.1|  putative DNA binding protein [Arabidopsis thaliana]
Length=432

 Score = 35.4 bits (80),  Expect = 0.13
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 0/38 (0%)
 Frame = +1

Query  337  KIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEMN  450
            +I  +++ RN+  G S+ YGF+EFE+ +VA  V  E N
Sbjct  128  EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFN  165


>gi|115477903|ref|NP_001062547.1|  Os08g0567200 [Oryza sativa (japonica cultivar-group)]
 gi|42409101|dbj|BAD10352.1|  putative RNA recognition motif (RRM)-containing protein [Oryza 
sativa (japonica cultivar-group)]
 gi|46804978|dbj|BAD17833.1|  putative RNA recognition motif (RRM)-containing protein [Oryza 
sativa (japonica cultivar-group)]
 gi|113624516|dbj|BAF24461.1|  Os08g0567200 [Oryza sativa (japonica cultivar-group)]
Length=235

 Score = 35.4 bits (80),  Expect = 0.13
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 0/33 (0%)
 Frame = +1

Query  352  RISRNRKTGKSKHYGFLEFENPEVAKVVADEMN  450
            R+ R+++TGK+K YGF+ F NP        EMN
Sbjct  157  RVVRDKRTGKTKGYGFVSFSNPTDLAGAIKEMN  189


>gi|92887758|gb|ABE89041.1|  RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]
Length=280

 Score = 35.0 bits (79),  Expect = 0.17
 Identities = 17/77 (22%), Positives = 42/77 (54%), Gaps = 0/77 (0%)
 Frame = +1

Query  268  LYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEM  447
            L++G++P      Q+   F+  G ++ + +  ++ TG+S+ +GF+   +    +  A ++
Sbjct  86   LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL  145

Query  448  NNYLLFEHNLQLSLIPP  498
            N Y++    L+++  PP
Sbjct  146  NGYVVDGRELRVNAGPP  162


>gi|21591633|gb|AAM64164.1|AF515695_1  cleavage stimulation factor 64 [Arabidopsis thaliana]
Length=461

 Score = 35.0 bits (79),  Expect = 0.17
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 0/63 (0%)
 Frame = +1

Query  268  LYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEM  447
            +++G+IP+   EEQ++    + G +   R+  +R+TGK K YGF E+++ E A      +
Sbjct  11   VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL  70

Query  448  NNY  456
             +Y
Sbjct  71   QSY  73


>gi|30689357|ref|NP_850395.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|18252907|gb|AAL62380.1|  putative U1 small nuclear ribonucleoprotein 70 kDa [Arabidopsis 
thaliana]
 gi|21389635|gb|AAM48016.1|  putative U1 small nuclear ribonucleoprotein 70 kDa [Arabidopsis 
thaliana]
Length=333

 Score = 35.0 bits (79),  Expect = 0.17
 Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 0/61 (0%)
 Frame = +1

Query  229  SEPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEF  408
            S   + V +    L++G + H   E+ ++    ++G+IK LR+ R+  TG S+ YGF+E+
Sbjct  53   SGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEY  112

Query  409  E  411
            E
Sbjct  113  E  113


>gi|9930616|gb|AAG02117.1|AF293840_1  poly(A) binding protein [Arabidopsis thaliana]
Length=660

 Score = 35.0 bits (79),  Expect = 0.17
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 0/30 (0%)
 Frame = +1

Query  373  TGKSKHYGFLEFENPEVAKVVADEMNNYLL  462
            TG+SK YGF++FE  E A+   D++N  L+
Sbjct  172  TGRSKGYGFVQFEKEESAQAAIDKLNGMLM  201


>gi|3287682|gb|AAC25510.1|AAC25510  Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) 
from A. thaliana. [Arabidopsis thaliana]
Length=655

 Score = 35.0 bits (79),  Expect = 0.17
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 0/30 (0%)
 Frame = +1

Query  373  TGKSKHYGFLEFENPEVAKVVADEMNNYLL  462
            TG+SK YGF++FE  E A+   D++N  L+
Sbjct  172  TGRSKGYGFVQFEKEESAQAAIDKLNGMLM  201


>gi|22330574|ref|NP_177325.2|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|7239507|gb|AAF43233.1|AC012654_17  Contains similarity to the polyadenylation factor 64 kDa subunit 
from Xenopus laevis gb|U17394; It contains RNA recognition 
motif PF|00076.  ESTs gb|AI993960 and T42211 come from this 
gene. [Arabidopsis thaliana]
 gi|110738120|dbj|BAF00992.1|  cleavage stimulation factor like protein [Arabidopsis thaliana]
Length=461

 Score = 35.0 bits (79),  Expect = 0.17
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 0/63 (0%)
 Frame = +1

Query  268  LYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADEM  447
            +++G+IP+   EEQ++    + G +   R+  +R+TGK K YGF E+++ E A      +
Sbjct  11   VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL  70

Query  448  NNY  456
             +Y
Sbjct  71   QSY  73


>gi|15219945|ref|NP_173690.1|  PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding [Arabidopsis thaliana]
 gi|12643628|sp|O64380|PABP3_ARATH  Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP 
3)
 gi|2505869|emb|CAA72907.1|  polyA binding protein PAB3 [Arabidopsis thaliana]
 gi|15450820|gb|AAK96681.1|  Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis 
thaliana]
Length=660

 Score = 35.0 bits (79),  Expect = 0.17
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 0/30 (0%)
 Frame = +1

Query  373  TGKSKHYGFLEFENPEVAKVVADEMNNYLL  462
            TG+SK YGF++FE  E A+   D++N  L+
Sbjct  172  TGRSKGYGFVQFEKEESAQAAIDKLNGMLM  201


>gi|116310076|emb|CAH67097.1|  H0818E04.14 [Oryza sativa (indica cultivar-group)]
Length=426

 Score = 34.7 bits (78),  Expect = 0.22
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = +1

Query  199  PLEGGPGRRISEPEEPVK------ETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRIS  360
            P     GRR   P  P        E    +++G + +   E  +   F   G++  +++ 
Sbjct  77   PPAAAAGRRTPTPPAPAGSGGNGCEENKTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVI  136

Query  361  RNRKTGKSKHYGFLEF  408
            RNR+TG+S+ YGF+EF
Sbjct  137  RNRQTGQSEGYGFVEF  152


>gi|115458668|ref|NP_001052934.1|  Os04g0449900 [Oryza sativa (japonica cultivar-group)]
 gi|113564505|dbj|BAF14848.1|  Os04g0449900 [Oryza sativa (japonica cultivar-group)]
Length=426

 Score = 34.7 bits (78),  Expect = 0.22
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = +1

Query  199  PLEGGPGRRISEPEEPVK------ETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRIS  360
            P     GRR   P  P        E    +++G + +   E  +   F   G++  +++ 
Sbjct  77   PPAAAAGRRTPTPPAPAGSGGNGCEENKTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVI  136

Query  361  RNRKTGKSKHYGFLEF  408
            RNR+TG+S+ YGF+EF
Sbjct  137  RNRQTGQSEGYGFVEF  152


>gi|62320844|dbj|BAD93798.1|  putative protein [Arabidopsis thaliana]
Length=567

 Score = 34.7 bits (78),  Expect = 0.22
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
 Frame = +1

Query  190  DFLPLEGGPGRRISEPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRISRNR  369
            D+  LE  P   I E E P      VL++ ++        +  FF   G++  +R+  N 
Sbjct  164  DYRRLESHP---IEEDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNH  220

Query  370  KTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNL  477
            + GK   YGF+EF + +  K   +  N   L +H +
Sbjct  221  E-GKHVGYGFVEFASADETKKALENKNGEYLHDHKI  255


>gi|1054915|gb|AAA81023.1|  CEBP-1 [Dianthus caryophyllus]
Length=292

 Score = 34.7 bits (78),  Expect = 0.22
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
 Frame = +1

Query  181  ESSDFLPLEG-GPGRRISEPEEPVKETATVLYIGHIPHgfyeeqmqgffqqfgKIKRLRI  357
            ++S+  P  G G     SEP E VK     LY+G++P     E++   F   G ++   +
Sbjct  89   DASEPQPSSGFGSEDGFSEPSEDVK-----LYVGNLPFDVDSEKLANMFDAAGVVEIAEV  143

Query  358  SRNRKTGKSKHYGFLEFENPEVAKVVADEMNNYLLFEHNLQLSLIPPERVHPK  516
              NR+T +S+ +GF+     E A    +  ++Y L    L ++   P    P+
Sbjct  144  IYNRETDRSRGFGFVTMSTVEEADKAVEMFHSYELNGRLLTVNKAAPRGSRPE  196


>gi|166786|gb|AAA32832.1|  poly(A)-binding protein
Length=668

 Score = 34.7 bits (78),  Expect = 0.22
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 0/29 (0%)
 Frame = +1

Query  376  GKSKHYGFLEFENPEVAKVVADEMNNYLL  462
            G+SK YGF++FE  E A+   D++N  LL
Sbjct  169  GRSKGYGFVQFEKEETAQAAIDKLNGMLL  197
Distribution of 120 Blast Hits on the Query Sequence
