Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168859071-28361-163170717311.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig59 Length=518
Score E Sequences producing significant alignments: (Bits) Value gi|115450157|ref|NP_001048679.1| Os03g0105600 [Oryza sativa (... 273 3e-73 gi|51988178|emb|CAE52517.1| beta tubulin [Setaria viridis] 272 6e-73 gi|51988176|emb|CAE52516.1| beta tubulin [Setaria viridis] 270 3e-72 gi|460991|emb|CAA55022.1| beta tubulin [Oryza sativa (japonica c 270 3e-72 gi|310317|gb|AAA66495.1| beta-tubulin 270 3e-72 gi|1076737|pir||JC2510 beta-tubulin R1623 - rice 270 3e-72 gi|8928414|sp|Q41783|TBB6_MAIZE Tubulin beta-6 chain (Beta-6 ... 270 3e-72 gi|115440571|ref|NP_001044565.1| Os01g0805900 [Oryza sativa (... 270 3e-72 gi|19569135|gb|AAL92026.1|AF484959_1 tubulin beta-1 [Gossypiu... 269 4e-72 gi|54036487|sp|Q6VAF4|TBB9_GOSHI Tubulin beta-9 chain (Beta-9... 269 4e-72 gi|18420724|ref|NP_568437.1| TUB8 [Arabidopsis thaliana] >gi|... 269 4e-72 gi|15451226|gb|AAK96884.1| beta tubulin [Arabidopsis thaliana... 269 5e-72 gi|76573337|gb|ABA46773.1| unknown [Solanum tuberosum] 269 5e-72 gi|8928430|sp|Q9ZRB1|TBB2_WHEAT Tubulin beta-2 chain (Beta-2 ... 269 5e-72 gi|8928425|sp|Q9ZPN9|TBB2_ELEIN Tubulin beta-2 chain (Beta-2 ... 269 5e-72 gi|8928403|sp|P93176|TBB_HORVU Tubulin beta chain (Beta tubul... 269 5e-72 gi|54036491|sp|Q6VAF8|TBB3_GOSHI Tubulin beta-3 chain (Beta-3... 268 6e-72 gi|586076|sp|P37392|TBB1_LUPAL Tubulin beta-1 chain (Beta-1 t... 268 6e-72 gi|62546343|gb|AAX86048.1| tubulin B4 [Glycine max] 268 8e-72 gi|115463893|ref|NP_001055546.1| Os05g0413200 [Oryza sativa (... 268 1e-71 gi|15239914|ref|NP_196786.1| TUB6 (BETA-6 TUBULIN) [Arabidops... 268 1e-71 gi|66271041|gb|AAY43798.1| tubulin [Gossypium hirsutum] 267 1e-71 gi|166908|gb|AAA32886.1| beta-8 tubulin 267 1e-71 gi|76573295|gb|ABA46752.1| unknown [Solanum tuberosum] 267 1e-71 gi|115436006|ref|NP_001042761.1| Os01g0282800 [Oryza sativa (... 267 1e-71 gi|8928431|sp|Q9ZRB2|TBB1_WHEAT Tubulin beta-1 chain (Beta-1 ... 267 1e-71 gi|8928427|sp|Q9ZRA8|TBB5_WHEAT Tubulin beta-5 chain (Beta-5 ... 267 1e-71 gi|8928423|sp|Q9ZPN7|TBB4_ELEIN Tubulin beta-4 chain (Beta-4 ... 267 1e-71 gi|8928421|sp|Q43697|TBB5_MAIZE Tubulin beta-5 chain (Beta-5 ... 267 1e-71 gi|13605867|gb|AAK32919.1|AF367332_1 AT5g62700/MRG21_12 [Arab... 267 2e-71 gi|5668667|dbj|BAA82637.1| Beta-tubulin [Zinnia elegans] 267 2e-71 gi|18424620|ref|NP_568959.1| TUB2; GTP binding / GTPase/ stru... 267 2e-71 gi|51945069|gb|AAU14217.1| TUB8 [Quercus petraea] 266 2e-71 gi|322701|pir||JA0049 Tubulin beta-2 chain - soybean 266 3e-71 gi|135449|sp|P18025|TBB1_MAIZE Tubulin beta-1 chain (Beta-1 t... 266 3e-71 gi|92876121|gb|ABE83854.1| Cell division protein FtsZ [Medicago 266 4e-71 gi|135460|sp|P18026|TBB2_MAIZE Tubulin beta-2 chain (Beta-2 t... 265 5e-71 gi|26450912|dbj|BAC42563.1| putative tubulin beta-6 chain [Arabi 265 9e-71 gi|8928416|sp|Q41785|TBB8_MAIZE Tubulin beta-8 chain (Beta-8 ... 265 9e-71 gi|81952|pir||S20869 tubulin beta-2 chain - garden pea (fragment 265 9e-71 gi|115469470|ref|NP_001058334.1| Os06g0671900 [Oryza sativa (... 264 2e-70 gi|74053562|sp|Q40665|TBB3_ORYSA Tubulin beta-3 chain (Beta-3... 264 2e-70 gi|8928429|sp|Q9ZRB0|TBB3_WHEAT Tubulin beta-3 chain (Beta-3 ... 264 2e-70 gi|493725|emb|CAA55912.1| beta tubulin [Oryza sativa (japonica c 263 2e-70 gi|8928428|sp|Q9ZRA9|TBB4_WHEAT Tubulin beta-4 chain (Beta-4 ... 263 2e-70 gi|115455701|ref|NP_001051451.1| Os03g0780600 [Oryza sativa (... 263 2e-70 gi|115444453|ref|NP_001046006.1| Os02g0167300 [Oryza sativa (... 263 2e-70 gi|1076738|pir||JC2511 beta-tubulin R2242 - rice 263 2e-70 gi|8928412|sp|Q40106|TBB2_LUPAL Tubulin beta-2 chain (Beta-2 ... 263 3e-70 gi|8928415|sp|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 ... 263 3e-70 gi|8928426|sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain (Beta-1 ... 263 3e-70 gi|54036490|sp|Q6VAF7|TBB5_GOSHI Tubulin beta-5 chain (Beta-5... 263 3e-70 gi|135462|sp|P12460|TBB2_SOYBN Tubulin beta-2 chain (Beta-2 t... 263 3e-70 gi|267075|sp|P29501|TBB2_PEA Tubulin beta-2 chain (Beta-2 tub... 263 3e-70 gi|77416913|gb|ABA81852.1| unknown [Solanum tuberosum] 262 4e-70 gi|1351202|sp|P28551|TBB3_SOYBN Tubulin beta chain (Beta tubu... 262 4e-70 gi|8928424|sp|Q9ZPN8|TBB3_ELEIN Tubulin beta-3 chain (Beta-3 ... 262 6e-70 gi|267072|sp|P29500|TBB1_PEA Tubulin beta-1 chain (Beta-1 tub... 262 6e-70 gi|303842|dbj|BAA02505.1| beta-tubulin [Oryza sativa (japonica c 262 6e-70 gi|115253056|emb|CAL46265.1| beta-tubulin 6 [Oryza sativa (indic 261 8e-70 gi|92889845|gb|ABE90057.1| Tubulin/FtsZ family, GTPase domain... 261 8e-70 gi|92876124|gb|ABE83857.1| Cell division protein FtsZ [Medicago 261 1e-69 gi|15227559|ref|NP_180515.1| TUB7 [Arabidopsis thaliana] >gi|... 261 1e-69 gi|3986687|gb|AAC84132.1| beta-tubulin [Cichorium intybus] 260 2e-69 gi|37038217|gb|AAQ88116.1| beta-tubulin 3 [Physcomitrella patens 259 3e-69 gi|4105696|gb|AAD02498.1| beta tubulin 1 [Arabidopsis thaliana] 259 5e-69 gi|15222873|ref|NP_177706.1| TUB1; GTP binding / GTPase/ stru... 259 5e-69 gi|26449623|dbj|BAC41937.1| putative tubulin beta-1 chain [Ar... 259 5e-69 gi|464850|sp|P33630|TBB1_ANEPH Tubulin beta-1 chain (Beta-1 t... 259 5e-69 gi|37038205|gb|AAQ88115.1| beta-tubulin 2 [Physcomitrella patens 258 6e-69 gi|37038246|gb|AAQ88118.1| beta-tubulin 5 [Physcomitrella patens 258 8e-69 gi|37038179|gb|AAQ88113.1| beta-tubulin 6 [Physcomitrella patens 257 1e-68 gi|135453|sp|P11482|TBB1_VOLCA Tubulin beta chain (Beta tubul... 257 1e-68 gi|135478|sp|P04690|TBB_CHLRE Tubulin beta-1/beta-2 chain >gi... 257 1e-68 gi|18394812|ref|NP_564101.1| TUB5 [Arabidopsis thaliana] >gi|... 257 2e-68 gi|8928401|sp|O04386|TBB_CHLIN Tubulin beta chain (Beta tubul... 257 2e-68 gi|37038193|gb|AAQ88114.1| beta-tubulin 1 [Physcomitrella patens 256 3e-68 gi|40036995|gb|AAR37366.1| beta-tubulin [Nicotiana attenuata] 254 9e-68 gi|23452315|gb|AAN32988.1| beta-tubulin 1 [Gossypium hirsutum] 254 9e-68 gi|77963735|gb|ABB13293.1| beta-tubulin [Lycopersicon esculentum 254 9e-68 gi|5668669|dbj|BAA82638.1| Beta-tubulin [Zinnia elegans] 253 2e-67 gi|54036489|sp|Q6VAF6|TBB6_GOSHI Tubulin beta-6 chain (Beta-6... 253 3e-67 gi|15233429|ref|NP_193821.1| TUB9; GTP binding / GTPase/ stru... 253 3e-67 gi|829169|gb|AAA67322.1| beta-tubulin 253 4e-67 gi|1174595|sp|P46263|TBB1_SOLTU Tubulin beta-1 chain (Beta-1 ... 252 5e-67 gi|1174599|sp|P46264|TBB2_SOLTU Tubulin beta-2 chain (Beta-2 ... 252 5e-67 gi|37038236|gb|AAQ88117.1| beta-tubulin 4 [Physcomitrella patens 252 6e-67 gi|135452|sp|P12459|TBB1_SOYBN Tubulin beta-1 chain (Beta-1 t... 251 8e-67 gi|3915083|sp|Q39445|TBB_CICAR Tubulin beta chain (Beta tubul... 251 8e-67 gi|81816|pir||JA0048 tubulin beta-1 chain - soybean 251 8e-67 gi|77999243|gb|ABB16968.1| beta-tubulin-like protein [Solanum tu 251 1e-66 gi|8928411|sp|Q39697|TBB2_DAUCA Tubulin beta-2 chain (Beta-2 ... 251 1e-66 gi|92894218|gb|ABE92128.1| Cell division protein FtsZ; Peptid... 251 1e-66 gi|92872824|gb|ABE81376.1| Cell division protein FtsZ [Medicago 250 2e-66 gi|267076|sp|P29502|TBB3_PEA Tubulin beta-3 chain (Beta-3 tub... 250 2e-66 gi|56112435|gb|AAV71172.1| beta-tubulin [Lotus corniculatus] 249 3e-66 gi|166640|gb|AAA32757.1| beta-tubulin 249 4e-66 gi|15241472|ref|NP_199247.1| TUB4 [Arabidopsis thaliana] >gi|... 249 4e-66 gi|8928420|sp|Q43695|TBB3_MAIZE Tubulin beta-3 chain (Beta-3 ... 248 1e-65 gi|115454449|ref|NP_001050825.1| Os03g0661300 [Oryza sativa (... 247 1e-65
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 11, 2007 5:57 PM Number of letters in database: 101,016,998 Number of sequences in database: 283,237 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283237 Number of Hits to DB: 353 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 518 Length of database: 101016998 Length adjustment: 105 Effective length of query: 413 Effective length of database: 71277113 Effective search space: 4775566571 Effective search space used: 4775566571 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)