Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168859368-12881-167795081238.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig65 Length=562
Score E Sequences producing significant alignments: (Bits) Value gi|115445707|ref|NP_001046633.1| Os02g0304900 [Oryza sativa (... 148 1e-35 gi|115465439|ref|NP_001056319.1| Os05g0562200 [Oryza sativa (... 142 1e-33 gi|115439097|ref|NP_001043828.1| Os01g0672400 [Oryza sativa (... 114 3e-25 gi|28393233|gb|AAO42046.1| unknown protein [Arabidopsis thali... 104 2e-22 gi|66271049|gb|AAY43802.1| Fb2 [Gossypium hirsutum] 102 7e-22 gi|25992529|gb|AAN77145.1| fiber protein Fb2 [Gossypium barbaden 102 7e-22 gi|15240426|ref|NP_198051.1| unknown protein [Arabidopsis tha... 101 2e-21 gi|15230036|ref|NP_187221.1| unknown protein [Arabidopsis tha... 88.6 1e-17 gi|15028023|gb|AAK76542.1| unknown protein [Arabidopsis thali... 86.7 5e-17 gi|469110|emb|CAA55321.1| Di19 [Arabidopsis thaliana] 86.7 5e-17 gi|2191171|gb|AAB61057.1| similar to A. thaliana DI19 mRNA (N... 85.5 1e-16 gi|18377875|gb|AAL67123.1| AT3g06760/F3E22_10 [Arabidopsis th... 84.0 3e-16 gi|13937216|gb|AAK50100.1|AF372963_1 AT5g49230/K21P3_11 [Arab... 82.8 7e-16 gi|15239827|ref|NP_199734.1| HRB1 (HYPERSENSITIVE TO RED AND ... 80.9 3e-15 gi|3377806|gb|AAC28179.1| T2H3.13 [Arabidopsis thaliana] 80.5 4e-15 gi|30679079|ref|NP_849286.1| unknown protein [Arabidopsis thalia 80.5 4e-15 gi|15235270|ref|NP_192129.1| unknown protein [Arabidopsis tha... 80.5 4e-15 gi|26452595|dbj|BAC43381.1| unknown protein [Arabidopsis thalian 79.7 6e-15 gi|115463401|ref|NP_001055300.1| Os05g0358000 [Oryza sativa (... 77.4 3e-14 gi|55167983|gb|AAV43851.1| unknown protein [Oryza sativa (japoni 73.9 3e-13 gi|30696097|ref|NP_849821.1| ATDI19 [Arabidopsis thaliana] 73.6 5e-13 gi|30696095|ref|NP_564715.2| ATDI19 [Arabidopsis thaliana] >g... 73.6 5e-13 gi|115442503|ref|NP_001045531.1| Os01g0971100 [Oryza sativa (... 72.8 8e-13 gi|28195116|gb|AAO33770.1| unknown [Oryza sativa (indica cultiva 69.3 9e-12 gi|115461655|ref|NP_001054427.1| Os05g0107900 [Oryza sativa (... 68.9 1e-11 gi|15230782|ref|NP_187332.1| unknown protein [Arabidopsis tha... 64.7 2e-10 gi|115489026|ref|NP_001067000.1| Os12g0556100 [Oryza sativa (... 60.1 5e-09 gi|15217855|ref|NP_171775.1| unknown protein [Arabidopsis thalia 54.7 2e-07 gi|87241066|gb|ABD32924.1| hypothetical protein MtrDRAFT_AC15... 38.1 0.021 gi|115448053|ref|NP_001047806.1| Os02g0694600 [Oryza sativa (... 36.2 0.080 gi|5802627|gb|AAD51742.1|AF176089_1 COP8 [Arabidopsis thaliana] 33.9 0.40 gi|87241067|gb|ABD32925.1| hypothetical protein MtrDRAFT_AC15... 33.9 0.40 gi|21592680|gb|AAM64629.1| COP8 (constitutive photomorphogeni... 33.9 0.40 gi|15239134|ref|NP_199111.1| COP8 (CONSTITUTIVE PHOTOMORPHOGE... 33.9 0.40 gi|52353566|gb|AAU44132.1| unknown protein [Oryza sativa (japoni 33.5 0.52 gi|41053001|dbj|BAD07910.1| GCN5-related N-acetyltransferase-... 32.7 0.88 gi|22795247|gb|AAN08219.1| hypothetical protein [Oryza sativa... 32.0 1.5 gi|92870014|gb|ABE79425.1| hypothetical protein MtrDRAFT_AC14... 30.8 3.4 gi|18411296|ref|NP_567171.1| RHB1A; protein binding / ubiquit... 30.8 3.4 gi|3790581|gb|AAC69853.1| RING-H2 finger protein RHB1a [Arabi... 30.8 3.4 gi|39104581|dbj|BAC42779.2| putative RING-H2 finger protein RHB1 30.8 3.4 gi|115485147|ref|NP_001067717.1| Os11g0294600 [Oryza sativa (... 30.4 4.4 gi|30689895|ref|NP_850429.1| structural constituent of nuclea... 30.4 4.4 gi|15228626|ref|NP_191749.1| unknown protein [Arabidopsis tha... 30.4 4.4 gi|92918539|gb|ABE96719.1| hypothetical protein MtrDRAFT_AC14... 30.0 5.7 gi|53370657|gb|AAU89152.1| hypothetical protein LOC_Os03g4334... 30.0 5.7 gi|115461510|ref|NP_001054355.1| Os04g0691000 [Oryza sativa (... 29.6 7.5 gi|90657625|gb|ABD96923.1| hypothetical protein [Cleome spinosa] 29.6 7.5 gi|15222289|ref|NP_177686.1| transcription factor/ zinc ion b... 29.6 7.5 gi|115391852|dbj|BAF33369.1| soluble acid invertase [Fragaria x 29.3 9.8 gi|115454021|ref|NP_001050611.1| Os03g0598700 [Oryza sativa (... 29.3 9.8 gi|9755382|gb|AAF98189.1|AC000107_12 F17F8.19 [Arabidopsis thali 29.3 9.8 gi|77548311|gb|ABA91108.1| expressed protein [Oryza sativa (japo 29.3 9.8 gi|55296381|dbj|BAD68504.1| hypothetical protein [Oryza sativa ( 29.3 9.8
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 11, 2007 5:57 PM Number of letters in database: 101,016,998 Number of sequences in database: 283,237 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283237 Number of Hits to DB: 395 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 562 Length of database: 101016998 Length adjustment: 107 Effective length of query: 455 Effective length of database: 70710639 Effective search space: 5656851120 Effective search space used: 5656851120 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)