Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168859560-1495-74555701449.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,457,254 sequences; 1,532,736,548 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig68 Length=411
Score E Sequences producing significant alignments: (Bits) Value gi|115469470|ref|NP_001058334.1| Os06g0671900 [Oryza sativa (... 255 3e-68 gi|74053562|sp|Q40665|TBB3_ORYSA Tubulin beta-3 chain (Beta-3... 255 3e-68 gi|493725|emb|CAA55912.1| beta tubulin [Oryza sativa (japonica c 255 4e-68 gi|115444453|ref|NP_001046006.1| Os02g0167300 [Oryza sativa (... 255 4e-68 gi|1076738|pir||JC2511 beta-tubulin R2242 - rice 255 4e-68 gi|92889845|gb|ABE90057.1| Tubulin/FtsZ family, GTPase domain... 254 9e-68 gi|1351202|sp|P28551|TBB3_SOYBN Tubulin beta chain (Beta tubu... 254 9e-68 gi|8928415|sp|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 ... 254 9e-68 gi|8928426|sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain (Beta-1 ... 254 9e-68 gi|54036490|sp|Q6VAF7|TBB5_GOSHI Tubulin beta-5 chain (Beta-5... 252 3e-67 gi|8928424|sp|Q9ZPN8|TBB3_ELEIN Tubulin beta-3 chain (Beta-3 ... 250 1e-66 gi|115455701|ref|NP_001051451.1| Os03g0780600 [Oryza sativa (... 250 1e-66 gi|8928428|sp|Q9ZRA9|TBB4_WHEAT Tubulin beta-4 chain (Beta-4 ... 249 3e-66 gi|8928429|sp|Q9ZRB0|TBB3_WHEAT Tubulin beta-3 chain (Beta-3 ... 248 4e-66 gi|303842|dbj|BAA02505.1| beta-tubulin [Oryza sativa (japonica c 248 4e-66 gi|829169|gb|AAA67322.1| beta-tubulin 244 7e-65 gi|166640|gb|AAA32757.1| beta-tubulin 244 7e-65 gi|15241472|ref|NP_199247.1| TUB4 [Arabidopsis thaliana] >gi|... 244 7e-65 gi|18394812|ref|NP_564101.1| TUB5 [Arabidopsis thaliana] >gi|... 243 1e-64 gi|92876124|gb|ABE83857.1| Cell division protein FtsZ [Medicago 243 2e-64 gi|37038217|gb|AAQ88116.1| beta-tubulin 3 [Physcomitrella patens 242 3e-64 gi|4105696|gb|AAD02498.1| beta tubulin 1 [Arabidopsis thaliana] 241 6e-64 gi|15222873|ref|NP_177706.1| TUB1; GTP binding / GTPase/ stru... 241 6e-64 gi|26449623|dbj|BAC41937.1| putative tubulin beta-1 chain [Ar... 241 6e-64 gi|37038246|gb|AAQ88118.1| beta-tubulin 5 [Physcomitrella patens 241 8e-64 gi|37038205|gb|AAQ88115.1| beta-tubulin 2 [Physcomitrella patens 241 8e-64 gi|267072|sp|P29500|TBB1_PEA Tubulin beta-1 chain (Beta-1 tub... 241 8e-64 gi|51988176|emb|CAE52516.1| beta tubulin [Setaria viridis] 240 1e-63 gi|460991|emb|CAA55022.1| beta tubulin [Oryza sativa (japonica c 240 1e-63 gi|310317|gb|AAA66495.1| beta-tubulin 240 1e-63 gi|1076737|pir||JC2510 beta-tubulin R1623 - rice 240 1e-63 gi|8928414|sp|Q41783|TBB6_MAIZE Tubulin beta-6 chain (Beta-6 ... 240 1e-63 gi|115440571|ref|NP_001044565.1| Os01g0805900 [Oryza sativa (... 240 1e-63 gi|76573295|gb|ABA46752.1| unknown [Solanum tuberosum] 240 1e-63 gi|51945069|gb|AAU14217.1| TUB8 [Quercus petraea] 239 2e-63 gi|37038179|gb|AAQ88113.1| beta-tubulin 6 [Physcomitrella patens 239 2e-63 gi|8928430|sp|Q9ZRB1|TBB2_WHEAT Tubulin beta-2 chain (Beta-2 ... 239 2e-63 gi|8928425|sp|Q9ZPN9|TBB2_ELEIN Tubulin beta-2 chain (Beta-2 ... 239 2e-63 gi|8928403|sp|P93176|TBB_HORVU Tubulin beta chain (Beta tubul... 239 2e-63 gi|19569135|gb|AAL92026.1|AF484959_1 tubulin beta-1 [Gossypiu... 239 2e-63 gi|3986687|gb|AAC84132.1| beta-tubulin [Cichorium intybus] 239 2e-63 gi|54036487|sp|Q6VAF4|TBB9_GOSHI Tubulin beta-9 chain (Beta-9... 239 2e-63 gi|37038193|gb|AAQ88114.1| beta-tubulin 1 [Physcomitrella patens 239 3e-63 gi|76573337|gb|ABA46773.1| unknown [Solanum tuberosum] 239 3e-63 gi|62546343|gb|AAX86048.1| tubulin B4 [Glycine max] 239 3e-63 gi|15233429|ref|NP_193821.1| TUB9; GTP binding / GTPase/ stru... 239 3e-63 gi|115253056|emb|CAL46265.1| beta-tubulin 6 [Oryza sativa (indic 238 4e-63 gi|115463893|ref|NP_001055546.1| Os05g0413200 [Oryza sativa (... 238 4e-63 gi|51988178|emb|CAE52517.1| beta tubulin [Setaria viridis] 238 5e-63 gi|54036489|sp|Q6VAF6|TBB6_GOSHI Tubulin beta-6 chain (Beta-6... 238 5e-63 gi|15239914|ref|NP_196786.1| TUB6 (BETA-6 TUBULIN) [Arabidops... 238 5e-63 gi|5668669|dbj|BAA82638.1| Beta-tubulin [Zinnia elegans] 238 5e-63 gi|13605867|gb|AAK32919.1|AF367332_1 AT5g62700/MRG21_12 [Arab... 238 6e-63 gi|166908|gb|AAA32886.1| beta-8 tubulin 238 6e-63 gi|135453|sp|P11482|TBB1_VOLCA Tubulin beta chain (Beta tubul... 238 6e-63 gi|135478|sp|P04690|TBB_CHLRE Tubulin beta-1/beta-2 chain >gi... 238 6e-63 gi|18420724|ref|NP_568437.1| TUB8 [Arabidopsis thaliana] >gi|... 238 6e-63 gi|586076|sp|P37392|TBB1_LUPAL Tubulin beta-1 chain (Beta-1 t... 238 6e-63 gi|81952|pir||S20869 tubulin beta-2 chain - garden pea (fragment 238 6e-63 gi|18424620|ref|NP_568959.1| TUB2; GTP binding / GTPase/ stru... 238 6e-63 gi|92876121|gb|ABE83854.1| Cell division protein FtsZ [Medicago 237 8e-63 gi|66271041|gb|AAY43798.1| tubulin [Gossypium hirsutum] 237 8e-63 gi|40036995|gb|AAR37366.1| beta-tubulin [Nicotiana attenuata] 237 8e-63 gi|34099835|gb|AAQ57206.1| beta tubulin [Populus alba x Populus 237 8e-63 gi|15451226|gb|AAK96884.1| beta tubulin [Arabidopsis thaliana... 237 8e-63 gi|77963735|gb|ABB13293.1| beta-tubulin [Lycopersicon esculentum 237 8e-63 gi|3915083|sp|Q39445|TBB_CICAR Tubulin beta chain (Beta tubul... 237 8e-63 gi|115436006|ref|NP_001042761.1| Os01g0282800 [Oryza sativa (... 237 8e-63 gi|8928431|sp|Q9ZRB2|TBB1_WHEAT Tubulin beta-1 chain (Beta-1 ... 237 8e-63 gi|8928427|sp|Q9ZRA8|TBB5_WHEAT Tubulin beta-5 chain (Beta-5 ... 237 8e-63 gi|8928423|sp|Q9ZPN7|TBB4_ELEIN Tubulin beta-4 chain (Beta-4 ... 237 8e-63 gi|8928421|sp|Q43697|TBB5_MAIZE Tubulin beta-5 chain (Beta-5 ... 237 8e-63 gi|8928401|sp|O04386|TBB_CHLIN Tubulin beta chain (Beta tubul... 237 8e-63 gi|26450912|dbj|BAC42563.1| putative tubulin beta-6 chain [Arabi 237 1e-62 gi|115450157|ref|NP_001048679.1| Os03g0105600 [Oryza sativa (... 237 1e-62 gi|322701|pir||JA0049 Tubulin beta-2 chain - soybean 236 1e-62 gi|5668667|dbj|BAA82637.1| Beta-tubulin [Zinnia elegans] 236 1e-62 gi|54036491|sp|Q6VAF8|TBB3_GOSHI Tubulin beta-3 chain (Beta-3... 236 2e-62 gi|267075|sp|P29501|TBB2_PEA Tubulin beta-2 chain (Beta-2 tub... 236 2e-62 gi|92872824|gb|ABE81376.1| Cell division protein FtsZ [Medicago 235 3e-62 gi|135460|sp|P18026|TBB2_MAIZE Tubulin beta-2 chain (Beta-2 t... 235 3e-62 gi|1174595|sp|P46263|TBB1_SOLTU Tubulin beta-1 chain (Beta-1 ... 235 4e-62 gi|1174599|sp|P46264|TBB2_SOLTU Tubulin beta-2 chain (Beta-2 ... 235 4e-62 gi|37038236|gb|AAQ88117.1| beta-tubulin 4 [Physcomitrella patens 234 5e-62 gi|8928416|sp|Q41785|TBB8_MAIZE Tubulin beta-8 chain (Beta-8 ... 234 5e-62 gi|8928411|sp|Q39697|TBB2_DAUCA Tubulin beta-2 chain (Beta-2 ... 234 9e-62 gi|15227559|ref|NP_180515.1| TUB7 [Arabidopsis thaliana] >gi|... 233 1e-61 gi|135462|sp|P12460|TBB2_SOYBN Tubulin beta-2 chain (Beta-2 t... 233 2e-61 gi|135449|sp|P18025|TBB1_MAIZE Tubulin beta-1 chain (Beta-1 t... 233 2e-61 gi|92894218|gb|ABE92128.1| Cell division protein FtsZ; Peptid... 232 4e-61 gi|135452|sp|P12459|TBB1_SOYBN Tubulin beta-1 chain (Beta-1 t... 232 4e-61 gi|81816|pir||JA0048 tubulin beta-1 chain - soybean 232 4e-61 gi|169436|gb|AAA33803.1| beta-2 tubulin (beta-2-tub) 231 5e-61 gi|8928412|sp|Q40106|TBB2_LUPAL Tubulin beta-2 chain (Beta-2 ... 231 5e-61 gi|135494|sp|P22852|TBB_POLAG Tubulin beta chain (Beta tubuli... 231 5e-61 gi|77416913|gb|ABA81852.1| unknown [Solanum tuberosum] 230 1e-60 gi|8928420|sp|Q43695|TBB3_MAIZE Tubulin beta-3 chain (Beta-3 ... 230 1e-60 gi|23452315|gb|AAN32988.1| beta-tubulin 1 [Gossypium hirsutum] 229 2e-60 gi|115454449|ref|NP_001050825.1| Os03g0661300 [Oryza sativa (... 229 3e-60 gi|23452329|gb|AAN32995.1| beta-tubulin 8 [Gossypium hirsutum] 228 5e-60
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 11, 2007 5:57 PM Number of letters in database: 101,016,998 Number of sequences in database: 283,237 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283237 Number of Hits to DB: 345 Number of extensions: 3 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 411 Length of database: 101016998 Length adjustment: 101 Effective length of query: 310 Effective length of database: 72410061 Effective search space: 2606762196 Effective search space used: 2606762196 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)