Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168921051-27058-122428320568.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig80 Length=835
Score E Sequences producing significant alignments: (Bits) Value gi|2267567|gb|AAB63581.1| glycine-rich RNA binding protein 1 ... 154 5e-37 gi|108863012|gb|ABG22105.1| Glycine-rich RNA-binding protein ... 153 7e-37 gi|34851124|gb|AAL13082.1| putative glycine-rich RNA-binding pro 153 7e-37 gi|2624326|emb|CAA05728.1| OsGRP1 [Oryza sativa (japonica cultiv 153 7e-37 gi|115489714|ref|NP_001067344.1| Os12g0632000 [Oryza sativa (... 153 7e-37 gi|18103931|emb|CAC83314.1| glycine rich RNA binding protein ... 152 2e-36 gi|2293480|gb|AAB65412.1| glycine-rich protein [Oryza sativa] 152 2e-36 gi|2331133|gb|AAB66885.1| glycine-rich protein [Oryza sativa] 151 3e-36 gi|92874472|gb|ABE82737.1| RNA-binding region RNP-1 (RNA reco... 150 5e-36 gi|6911144|gb|AAF31403.1|AF200322_1 putative glycine-rich RNA... 150 5e-36 gi|108710322|gb|ABF98117.1| retrotransposon protein, putative... 150 8e-36 gi|115454539|ref|NP_001050870.1| Os03g0670700 [Oryza sativa (... 150 8e-36 gi|50881454|gb|AAT85299.1| glycine-rich RNA-binding protein, ... 150 8e-36 gi|20152613|emb|CAD29693.1| putative glycine rich protein [Rumex 149 1e-35 gi|18076086|emb|CAC80549.1| glycine-rich RNA-binding protein [Ri 149 1e-35 gi|2267593|gb|AAB63589.1| glycine-rich RNA-binding protein [Oryz 149 1e-35 gi|5726567|gb|AAD48471.1|AF169205_1 glycine-rich RNA-binding pro 148 3e-35 gi|1346181|sp|P49311|GRP2_SINAL Glycine-rich RNA-binding prot... 147 4e-35 gi|6911142|gb|AAF31402.1| putative glycine-rich RNA binding p... 146 9e-35 gi|82623423|gb|ABB87126.1| putative glycine-rich RNA binding ... 145 1e-34 gi|1346180|sp|P49310|GRP1_SINAL Glycine-rich RNA-binding prot... 145 1e-34 gi|2331131|gb|AAB66884.1| glycine-rich protein [Oryza sativa] 145 2e-34 gi|30681492|ref|NP_850017.1| ATGRP7; RNA binding [Arabidopsis th 145 2e-34 gi|21553354|gb|AAM62447.1| glycine-rich RNA binding protein 7 [A 145 2e-34 gi|15226605|ref|NP_179760.1| ATGRP7; RNA binding [Arabidopsis... 145 2e-34 gi|92874469|gb|ABE82734.1| RNA-binding region RNP-1 (RNA reco... 144 6e-34 gi|6911146|gb|AAF31404.1|AF200323_1 putative glycine-rich RNA... 144 6e-34 gi|544426|sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding prote... 143 9e-34 gi|7024451|dbj|BAA92156.1| glycine-rich RNA-binding protein [Cit 142 1e-33 gi|469070|dbj|BAA03741.1| RNA-binding glycine-rich protein-1 ... 140 5e-33 gi|20257711|gb|AAM16021.1| glycine-rich RNA binding protein [Zea 140 6e-33 gi|20257695|gb|AAM16013.1| glycine-rich RNA binding protein [Zea 140 6e-33 gi|20257691|gb|AAM16011.1| glycine-rich RNA binding protein [Zea 140 6e-33 gi|20257667|gb|AAM15999.1| glycine-rich RNA binding protein [... 140 6e-33 gi|20257687|gb|AAM16009.1| glycine-rich RNA binding protein [... 140 6e-33 gi|20257675|gb|AAM16003.1| glycine-rich RNA binding protein [Zea 140 6e-33 gi|20257689|gb|AAM16010.1| glycine-rich RNA binding protein [Zea 140 6e-33 gi|20257669|gb|AAM16000.1| glycine-rich RNA binding protein [Zea 140 6e-33 gi|20257683|gb|AAM16007.1| glycine-rich RNA binding protein [Zea 140 6e-33 gi|20257715|gb|AAM16023.1| glycine-rich RNA binding protein [... 140 6e-33 gi|2668742|gb|AAB88616.1| glycine-rich RNA binding protein [Zea 140 6e-33 gi|2226370|gb|AAC50020.1| RNA-binding protein [Nicotiana glutino 140 6e-33 gi|20257707|gb|AAM16019.1| glycine-rich RNA binding protein [Zea 140 8e-33 gi|799015|emb|CAA89058.1| putative glycine rich RNA binding prot 140 8e-33 gi|469072|dbj|BAA03743.1| RNA-binding gricine-rich protein-1 ... 140 8e-33 gi|544423|sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding prote... 140 8e-33 gi|2674201|gb|AAC61786.1| glycine-rich RNA-binding protein [Euph 139 1e-32 gi|6273331|gb|AAF06329.1|AF191305_1 glycine-rich RNA binding pro 139 2e-32 gi|10799202|gb|AAG23220.1| glycine-rich RNA-binding protein [Sor 139 2e-32 gi|111162637|gb|ABH07505.1| glycine-rich RNA-binding protein [Ni 137 4e-32 gi|114145394|dbj|BAF30986.1| glycine-rich RNA-binding protein [T 137 4e-32 gi|20257693|gb|AAM16012.1| glycine-rich RNA binding protein [Zea 137 4e-32 gi|4704605|gb|AAD28176.1|AF109917_1 glycine-rich RNA-binding pro 137 4e-32 gi|90704785|dbj|BAE92287.1| putative glycine-rich RNA binding... 137 5e-32 gi|20257699|gb|AAM16015.1| glycine-rich RNA binding protein [... 137 5e-32 gi|20257679|gb|AAM16005.1| glycine-rich RNA binding protein [Zea 137 5e-32 gi|20257709|gb|AAM16020.1| glycine-rich RNA binding protein [Zea 137 5e-32 gi|20257681|gb|AAM16006.1| glycine-rich RNA binding protein [Zea 137 5e-32 gi|2645699|gb|AAC61787.1| glycine-rich RNA-binding protein [Euph 137 5e-32 gi|112994|sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, absc... 137 5e-32 gi|90265701|dbj|BAE91897.1| glycine-rich RNA-binding protein [Lo 137 7e-32 gi|544416|sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding prot... 136 9e-32 gi|22293|emb|CAA43431.1| glycine-rich protein [Zea mays] 135 2e-31 gi|1229138|gb|AAB07749.1| low temperature-responsive RNA-binding 135 2e-31 gi|2196542|gb|AAB61213.1| glycine-rich protein [Oryza sativa] 135 3e-31 gi|115529229|dbj|BAF34340.1| putative glycine-rich RNA-bindin... 134 3e-31 gi|30692256|ref|NP_849524.1| ATGRP8 (GLYCINE-RICH PROTEIN 8);... 134 6e-31 gi|30692254|ref|NP_849523.1| ATGRP8 (GLYCINE-RICH PROTEIN 8);... 134 6e-31 gi|15235002|ref|NP_195637.1| ATGRP8 (GLYCINE-RICH PROTEIN 8);... 134 6e-31 gi|974605|gb|AAA75104.1| single-stranded nucleic acid binding... 133 7e-31 gi|20257701|gb|AAM16016.1| glycine-rich RNA binding protein [Zea 133 1e-30 gi|20257697|gb|AAM16014.1| glycine-rich RNA binding protein [Zea 133 1e-30 gi|20257673|gb|AAM16002.1| glycine-rich RNA binding protein [Zea 131 4e-30 gi|1934994|emb|CAA73034.1| SGRP-1 [Solanum commersonii] 130 6e-30 gi|728594|emb|CAA88558.1| glycine rich protein, RNA binding p... 130 8e-30 gi|469071|dbj|BAA03742.1| RNA-binding glycine-rich protein-1 ... 130 8e-30 gi|21388660|dbj|BAC00786.1| glycine-rich RNA-binding protein [Ph 122 2e-27 gi|21388658|dbj|BAC00785.1| glycine-rich RNA binding protein ... 121 3e-27 gi|15226722|ref|NP_179221.1| RNA binding / nucleic acid bindi... 118 2e-26 gi|30692258|ref|NP_849525.1| ATGRP8 (GLYCINE-RICH PROTEIN 8);... 114 5e-25 gi|108863011|gb|ABG22104.1| Glycine-rich RNA-binding protein ... 110 5e-24 gi|115456445|ref|NP_001051823.1| Os03g0836200 [Oryza sativa (... 106 1e-22 gi|1395193|dbj|BAA12064.1| RNA-binding protein RZ-1 [Nicotian... 105 3e-22 gi|15982739|gb|AAL09710.1| AT3g26420/F20C19_14 [Arabidopsis t... 103 8e-22 gi|15231557|ref|NP_189273.1| ARRZ-1A; RNA binding / nucleotid... 103 8e-22 gi|12659074|gb|AAK01176.1| RNA-binding protein [Triticum aestivu 102 2e-21 gi|544421|sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding prote... 101 4e-21 gi|76160980|gb|ABA40453.1| RNA binding protein-like protein [... 99.4 2e-20 gi|115470953|ref|NP_001059075.1| Os07g0187300 [Oryza sativa (... 97.1 8e-20 gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Perse 95.5 2e-19 gi|133248|sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chlo... 95.5 2e-19 gi|21553972|gb|AAM63053.1| glycine-rich RNA binding protein, ... 94.7 4e-19 gi|829254|emb|CAA49174.1| glycine-rich RNA-binding protein [Arab 94.7 4e-19 gi|30682622|ref|NP_849377.1| ATGRP2 (GLYCINE-RICH RNA-BINDING... 94.7 4e-19 gi|15229525|ref|NP_189025.1| RNA binding / nucleic acid bindi... 94.7 4e-19 gi|15236359|ref|NP_193121.1| ATGRP2 (GLYCINE-RICH RNA-BINDING... 94.7 4e-19 gi|2826811|emb|CAA05727.1| AtGRP2 [Arabidopsis thaliana] 94.7 4e-19 gi|2366750|dbj|BAA22083.1| RNA binding protein [Nicotiana sylves 94.4 5e-19 gi|1009363|dbj|BAA11089.1| RGP-3 [Nicotiana sylvestris] 94.0 7e-19 gi|133246|sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chlo... 94.0 7e-19
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 419 Number of extensions: 9 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 835 Length of database: 101054579 Length adjustment: 112 Effective length of query: 723 Effective length of database: 69319491 Effective search space: 11507035506 Effective search space used: 11507035506 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 67 (30.4 bits)
