Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168922475-17774-57829615855.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig15 Length=456
Score E Sequences producing significant alignments: (Bits) Value gi|2267567|gb|AAB63581.1| glycine-rich RNA binding protein 1 ... 155 6e-38 gi|108863012|gb|ABG22105.1| Glycine-rich RNA-binding protein ... 155 7e-38 gi|34851124|gb|AAL13082.1| putative glycine-rich RNA-binding pro 155 7e-38 gi|2624326|emb|CAA05728.1| OsGRP1 [Oryza sativa (japonica cultiv 155 7e-38 gi|115489714|ref|NP_001067344.1| Os12g0632000 [Oryza sativa (... 155 7e-38 gi|18103931|emb|CAC83314.1| glycine rich RNA binding protein ... 154 2e-37 gi|2293480|gb|AAB65412.1| glycine-rich protein [Oryza sativa] 154 2e-37 gi|2331133|gb|AAB66885.1| glycine-rich protein [Oryza sativa] 153 3e-37 gi|92874472|gb|ABE82737.1| RNA-binding region RNP-1 (RNA reco... 152 5e-37 gi|6911144|gb|AAF31403.1|AF200322_1 putative glycine-rich RNA... 152 5e-37 gi|108710322|gb|ABF98117.1| retrotransposon protein, putative... 151 8e-37 gi|115454539|ref|NP_001050870.1| Os03g0670700 [Oryza sativa (... 151 8e-37 gi|50881454|gb|AAT85299.1| glycine-rich RNA-binding protein, ... 151 8e-37 gi|20152613|emb|CAD29693.1| putative glycine rich protein [Rumex 151 1e-36 gi|18076086|emb|CAC80549.1| glycine-rich RNA-binding protein [Ri 151 1e-36 gi|2267593|gb|AAB63589.1| glycine-rich RNA-binding protein [Oryz 151 1e-36 gi|5726567|gb|AAD48471.1|AF169205_1 glycine-rich RNA-binding pro 149 3e-36 gi|1346181|sp|P49311|GRP2_SINAL Glycine-rich RNA-binding prot... 149 4e-36 gi|6911142|gb|AAF31402.1| putative glycine-rich RNA binding p... 148 9e-36 gi|82623423|gb|ABB87126.1| putative glycine-rich RNA binding ... 147 2e-35 gi|1346180|sp|P49310|GRP1_SINAL Glycine-rich RNA-binding prot... 147 2e-35 gi|2331131|gb|AAB66884.1| glycine-rich protein [Oryza sativa] 147 2e-35 gi|30681492|ref|NP_850017.1| ATGRP7; RNA binding [Arabidopsis th 146 3e-35 gi|21553354|gb|AAM62447.1| glycine-rich RNA binding protein 7 [A 146 3e-35 gi|15226605|ref|NP_179760.1| ATGRP7; RNA binding [Arabidopsis... 146 3e-35 gi|92874469|gb|ABE82734.1| RNA-binding region RNP-1 (RNA reco... 145 6e-35 gi|6911146|gb|AAF31404.1|AF200323_1 putative glycine-rich RNA... 145 6e-35 gi|544426|sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding prote... 144 1e-34 gi|7024451|dbj|BAA92156.1| glycine-rich RNA-binding protein [Cit 144 1e-34 gi|469070|dbj|BAA03741.1| RNA-binding glycine-rich protein-1 ... 142 5e-34 gi|20257711|gb|AAM16021.1| glycine-rich RNA binding protein [Zea 142 6e-34 gi|20257695|gb|AAM16013.1| glycine-rich RNA binding protein [Zea 142 6e-34 gi|20257691|gb|AAM16011.1| glycine-rich RNA binding protein [Zea 142 6e-34 gi|20257667|gb|AAM15999.1| glycine-rich RNA binding protein [... 142 6e-34 gi|20257687|gb|AAM16009.1| glycine-rich RNA binding protein [... 142 6e-34 gi|20257675|gb|AAM16003.1| glycine-rich RNA binding protein [Zea 142 6e-34 gi|20257689|gb|AAM16010.1| glycine-rich RNA binding protein [Zea 142 6e-34 gi|20257669|gb|AAM16000.1| glycine-rich RNA binding protein [Zea 142 6e-34 gi|20257683|gb|AAM16007.1| glycine-rich RNA binding protein [Zea 142 6e-34 gi|20257715|gb|AAM16023.1| glycine-rich RNA binding protein [... 142 6e-34 gi|2668742|gb|AAB88616.1| glycine-rich RNA binding protein [Zea 142 6e-34 gi|2226370|gb|AAC50020.1| RNA-binding protein [Nicotiana glutino 142 6e-34 gi|20257707|gb|AAM16019.1| glycine-rich RNA binding protein [Zea 141 8e-34 gi|799015|emb|CAA89058.1| putative glycine rich RNA binding prot 141 8e-34 gi|469072|dbj|BAA03743.1| RNA-binding gricine-rich protein-1 ... 141 8e-34 gi|544423|sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding prote... 141 8e-34 gi|2674201|gb|AAC61786.1| glycine-rich RNA-binding protein [Euph 140 1e-33 gi|6273331|gb|AAF06329.1|AF191305_1 glycine-rich RNA binding pro 140 2e-33 gi|10799202|gb|AAG23220.1| glycine-rich RNA-binding protein [Sor 140 2e-33 gi|111162637|gb|ABH07505.1| glycine-rich RNA-binding protein [Ni 139 4e-33 gi|114145394|dbj|BAF30986.1| glycine-rich RNA-binding protein [T 139 4e-33 gi|20257693|gb|AAM16012.1| glycine-rich RNA binding protein [Zea 139 4e-33 gi|4704605|gb|AAD28176.1|AF109917_1 glycine-rich RNA-binding pro 139 4e-33 gi|20257699|gb|AAM16015.1| glycine-rich RNA binding protein [... 139 5e-33 gi|20257679|gb|AAM16005.1| glycine-rich RNA binding protein [Zea 139 5e-33 gi|20257709|gb|AAM16020.1| glycine-rich RNA binding protein [Zea 139 5e-33 gi|20257681|gb|AAM16006.1| glycine-rich RNA binding protein [Zea 139 5e-33 gi|2645699|gb|AAC61787.1| glycine-rich RNA-binding protein [Euph 139 5e-33 gi|112994|sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, absc... 139 5e-33 gi|90265701|dbj|BAE91897.1| glycine-rich RNA-binding protein [Lo 138 7e-33 gi|544416|sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding prot... 138 9e-33 gi|90704785|dbj|BAE92287.1| putative glycine-rich RNA binding... 137 1e-32 gi|22293|emb|CAA43431.1| glycine-rich protein [Zea mays] 137 2e-32 gi|1229138|gb|AAB07749.1| low temperature-responsive RNA-binding 137 2e-32 gi|2196542|gb|AAB61213.1| glycine-rich protein [Oryza sativa] 136 3e-32 gi|115529229|dbj|BAF34340.1| putative glycine-rich RNA-bindin... 136 4e-32 gi|30692256|ref|NP_849524.1| ATGRP8 (GLYCINE-RICH PROTEIN 8);... 135 6e-32 gi|30692254|ref|NP_849523.1| ATGRP8 (GLYCINE-RICH PROTEIN 8);... 135 6e-32 gi|15235002|ref|NP_195637.1| ATGRP8 (GLYCINE-RICH PROTEIN 8);... 135 6e-32 gi|974605|gb|AAA75104.1| single-stranded nucleic acid binding... 135 8e-32 gi|20257701|gb|AAM16016.1| glycine-rich RNA binding protein [Zea 134 1e-31 gi|20257697|gb|AAM16014.1| glycine-rich RNA binding protein [Zea 134 1e-31 gi|20257673|gb|AAM16002.1| glycine-rich RNA binding protein [Zea 132 4e-31 gi|728594|emb|CAA88558.1| glycine rich protein, RNA binding p... 131 9e-31 gi|1934994|emb|CAA73034.1| SGRP-1 [Solanum commersonii] 130 1e-30 gi|469071|dbj|BAA03742.1| RNA-binding glycine-rich protein-1 ... 130 2e-30 gi|21388660|dbj|BAC00786.1| glycine-rich RNA-binding protein [Ph 124 2e-28 gi|21388658|dbj|BAC00785.1| glycine-rich RNA binding protein ... 123 3e-28 gi|15226722|ref|NP_179221.1| RNA binding / nucleic acid bindi... 118 8e-27 gi|30692258|ref|NP_849525.1| ATGRP8 (GLYCINE-RICH PROTEIN 8);... 114 1e-25 gi|108863011|gb|ABG22104.1| Glycine-rich RNA-binding protein ... 110 2e-24 gi|115456445|ref|NP_001051823.1| Os03g0836200 [Oryza sativa (... 106 4e-23 gi|1395193|dbj|BAA12064.1| RNA-binding protein RZ-1 [Nicotian... 105 9e-23 gi|15982739|gb|AAL09710.1| AT3g26420/F20C19_14 [Arabidopsis t... 103 3e-22 gi|15231557|ref|NP_189273.1| ARRZ-1A; RNA binding / nucleotid... 103 3e-22 gi|544421|sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding prote... 102 4e-22 gi|12659074|gb|AAK01176.1| RNA-binding protein [Triticum aestivu 102 7e-22 gi|76160980|gb|ABA40453.1| RNA binding protein-like protein [... 99.4 5e-21 gi|115470953|ref|NP_001059075.1| Os07g0187300 [Oryza sativa (... 97.1 2e-20 gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Perse 95.5 7e-20 gi|133248|sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chlo... 95.5 7e-20 gi|21553972|gb|AAM63053.1| glycine-rich RNA binding protein, ... 94.7 1e-19 gi|829254|emb|CAA49174.1| glycine-rich RNA-binding protein [Arab 94.7 1e-19 gi|30682622|ref|NP_849377.1| ATGRP2 (GLYCINE-RICH RNA-BINDING... 94.7 1e-19 gi|15229525|ref|NP_189025.1| RNA binding / nucleic acid bindi... 94.7 1e-19 gi|15236359|ref|NP_193121.1| ATGRP2 (GLYCINE-RICH RNA-BINDING... 94.7 1e-19 gi|2826811|emb|CAA05727.1| AtGRP2 [Arabidopsis thaliana] 94.7 1e-19 gi|2366750|dbj|BAA22083.1| RNA binding protein [Nicotiana sylves 94.4 2e-19 gi|1009363|dbj|BAA11089.1| RGP-3 [Nicotiana sylvestris] 94.0 2e-19 gi|133246|sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chlo... 94.0 2e-19
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.317 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 223 Number of extensions: 4 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 456 Length of database: 101054579 Length adjustment: 103 Effective length of query: 353 Effective length of database: 71869632 Effective search space: 3521611968 Effective search space used: 3521611968 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 62 (28.5 bits)
