Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168922098-4046-117394887873.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig6 Length=146
Score E Sequences producing significant alignments: (Bits) Value gi|115449525|ref|NP_001048487.1| Os02g0813800 [Oryza sativa (... 80.1 2e-15 gi|49523569|emb|CAF18246.1| STY-L protein [Antirrhinum majus] 74.7 9e-14 gi|38345190|emb|CAE03368.2| OSJNBb0065L13.11 [Oryza sativa (j... 74.3 1e-13 gi|11141605|gb|AAG32022.1|AF277458_1 LEUNIG [Arabidopsis thalian 65.9 4e-11 gi|18418034|ref|NP_567896.1| LUG (LEUNIG) [Arabidopsis thalia... 65.9 4e-11 gi|7486768|pir||T08588 hypothetical protein L23H3.30 - Arabid... 65.9 4e-11 gi|27804457|gb|AAO22525.1| leunig [Brassica rapa subsp. pekinens 64.3 1e-10 gi|115456751|ref|NP_001051976.1| Os03g0860900 [Oryza sativa (... 62.8 3e-10 gi|92895307|gb|ABE92662.1| Lissencephaly type-1-like homology... 62.8 3e-10 gi|115438408|ref|NP_001043532.1| Os01g0607600 [Oryza sativa (... 61.6 8e-10 gi|53792192|dbj|BAD52825.1| putative LEUNIG [Oryza sativa (ja... 61.6 8e-10 gi|49523567|emb|CAF18245.1| STYLOSA protein [Antirrhinum majus] 61.2 1e-09 gi|115438404|ref|NP_001043531.1| Os01g0607400 [Oryza sativa (... 60.1 2e-09 gi|53792190|dbj|BAD52823.1| putative LEUNIG [Oryza sativa (ja... 60.1 2e-09 gi|53792191|dbj|BAD52824.1| LEUNIG-like [Oryza sativa (japoni... 60.1 2e-09 gi|55295951|dbj|BAD67819.1| putative transcriptional corepres... 58.2 9e-09 gi|115434852|ref|NP_001042184.1| Os01g0177100 [Oryza sativa (... 58.2 9e-09 gi|87240514|gb|ABD32372.1| Lissencephaly type-1-like homology... 57.8 1e-08 gi|110740707|dbj|BAE98454.1| hypothetical protein [Arabidopsis t 57.0 2e-08 gi|79324000|ref|NP_001031466.1| unknown protein [Arabidopsis tha 57.0 2e-08 gi|18403052|ref|NP_565749.1| unknown protein [Arabidopsis tha... 57.0 2e-08 gi|37781202|gb|AAO61684.1| fertilization-independent type 2 [Zea 42.0 6e-04 gi|28192549|gb|AAO26659.1| fertilization-independent endosperm p 42.0 6e-04 gi|30689405|ref|NP_197820.2| signal transducer [Arabidopsis thal 42.0 6e-04 gi|30689400|ref|NP_851068.1| signal transducer [Arabidopsis t... 42.0 6e-04 gi|33112302|sp|Q8VZY7|FIE1_MAIZE Polycomb group protein FIE1 ... 42.0 6e-04 gi|37781198|gb|AAO61682.1| fertilization-independent type 1 [Zea 40.8 0.001 gi|37781200|gb|AAO61683.1| fertilization-independent type 1 [Zea 40.8 0.001 gi|28192551|gb|AAO26660.1| fertilization-independent endosperm p 40.8 0.001 gi|47933819|gb|AAT39467.1| FIE2 [Zea mays] 40.8 0.001 gi|46200520|gb|AAS82596.1| fertilization-independent endosperm p 40.8 0.001 gi|33112301|sp|Q8VZY6|FIE2_MAIZE Polycomb group protein FIE2 ... 40.8 0.001 gi|27465061|gb|AAN85567.1| fertilization independent endosper... 37.7 0.012 gi|15232345|ref|NP_188710.1| FIE (FERTILIZATION-INDEPENDENT E... 37.4 0.016 gi|9294400|dbj|BAB02481.1| fertilization-independent endosper... 37.4 0.016 gi|92885781|gb|ABE87928.1| WD40-like [Medicago truncatula] 37.0 0.020 gi|15238760|ref|NP_200162.1| signal transducer [Arabidopsis t... 37.0 0.020 gi|42405322|gb|AAS13489.1| fertilization independent endosper... 36.6 0.027 gi|27465059|gb|AAN85568.1| fertilization independent endosper... 36.6 0.027 gi|115474713|ref|NP_001060953.1| Os08g0137100 [Oryza sativa (... 36.6 0.027 gi|115444967|ref|NP_001046263.1| Os02g0209000 [Oryza sativa (... 35.4 0.059 gi|49387914|dbj|BAD25014.1| putative coatomer protein complex... 35.4 0.059 gi|49387913|dbj|BAD25013.1| putative Golgi-associated particl... 35.4 0.059 gi|42568637|ref|NP_200684.2| nucleic acid binding / nucleotid... 35.0 0.078 gi|15238263|ref|NP_199016.1| signal transducer [Arabidopsis t... 35.0 0.078 gi|8843796|dbj|BAA97344.1| unnamed protein product [Arabidopsis 35.0 0.078 gi|92898868|gb|ABE94388.1| WD-40 repeat [Medicago truncatula] 34.7 0.10 gi|12324597|gb|AAG52258.1|AC011717_26 putative coatomer prote... 34.7 0.10 gi|15218215|ref|NP_175645.1| protein transporter [Arabidopsis... 34.7 0.10 gi|30699476|ref|NP_178116.2| protein transporter [Arabidopsis... 34.7 0.10 gi|119638456|gb|ABL85047.1| coatomer complex subunit [Brachypodi 33.9 0.17 gi|92888727|gb|ABE89536.1| Coatomer WD associated region; Coa... 33.9 0.17 gi|92886511|gb|ABE88367.1| Coatomer WD associated region; Coa... 33.9 0.17 gi|79512802|ref|NP_196852.3| FY (FY) [Arabidopsis thaliana] >... 33.9 0.17 gi|30683865|ref|NP_188219.2| protein transporter [Arabidopsis... 33.9 0.17 gi|30683862|ref|NP_850592.1| protein transporter [Arabidopsis... 33.9 0.17 gi|115466360|ref|NP_001056779.1| Os06g0143900 [Oryza sativa (... 33.9 0.17 gi|33945873|emb|CAE45585.1| coatomer alpha subunit-like protein 33.9 0.17 gi|9294445|dbj|BAB02664.1| coatomer protein complex, beta pri... 33.9 0.17 gi|115442261|ref|NP_001045410.1| Os01g0951000 [Oryza sativa (... 33.5 0.23 gi|75037131|gb|ABA12455.1| putative OsFY [Oryza sativa (japonica 33.5 0.23 gi|110740041|dbj|BAF01924.1| hypothetical protein [Arabidopsis t 33.5 0.23 gi|94541038|gb|ABF38930.1| immature pollen 1 [Oryza sativa (japo 33.5 0.23 gi|92879651|gb|ABE85670.1| Lissencephaly type-1-like homology... 33.5 0.23 gi|57900475|dbj|BAD87887.1| putative FY protein [Oryza sativa (j 33.5 0.23 gi|18379250|ref|NP_563703.1| nucleotide binding [Arabidopsis ... 33.5 0.23 gi|3142301|gb|AAC16752.1| Contains similarity to neural cell ... 33.5 0.23 gi|115484031|ref|NP_001065677.1| Os11g0134500 [Oryza sativa (... 33.5 0.23 gi|30678798|ref|NP_849587.1| nucleotide binding [Arabidopsis tha 33.5 0.23 gi|50261761|gb|AAT72461.1| FY protein [Lolium perenne] 33.1 0.29 gi|15226538|ref|NP_179734.1| protein transporter/ transporter... 33.1 0.29 gi|15224798|ref|NP_179544.1| nucleotide binding [Arabidopsis ... 33.1 0.29 gi|116000476|emb|CAL50156.1| WD40 repeat-containing protein (ISS 32.7 0.39 gi|115450303|ref|NP_001048752.1| Os03g0115400 [Oryza sativa (... 32.7 0.39 gi|24021163|gb|AAN40972.1|AF470350_1 WD40 [Tortula ruralis] 32.7 0.39 gi|75214628|gb|ABA18100.1| transducin/WD-40 repeat family protei 32.7 0.39 gi|27476103|gb|AAO17034.1| Hypothetical protein [Oryza sativa (j 32.7 0.39 gi|15220684|ref|NP_176393.1| protein transporter/ transporter... 32.7 0.39 gi|115445619|ref|NP_001046589.1| Os02g0290300 [Oryza sativa (... 32.7 0.39 gi|38636835|dbj|BAD03075.1| putative Polycomb group protein F... 32.7 0.39 gi|108862518|gb|ABA97498.2| transducin family protein, putati... 32.3 0.50 gi|115488248|ref|NP_001066611.1| Os12g0294100 [Oryza sativa (... 32.3 0.50 gi|92885109|gb|ABE87629.1| WD40-like [Medicago truncatula] 32.3 0.50 gi|15229130|ref|NP_189852.1| nucleotide binding [Arabidopsis ... 32.3 0.50 gi|12321111|gb|AAG50659.1|AC084242_3 hypothetical protein [Arabi 32.3 0.50 gi|15221989|ref|NP_175318.1| protein phosphatase type 2A regu... 32.3 0.50 gi|15241815|ref|NP_195863.1| signal transducer [Arabidopsis t... 32.0 0.66 gi|87162556|gb|ABD28351.1| Lissencephaly type-1-like homology... 32.0 0.66 gi|116057895|emb|CAL54098.1| WD40 repeat-containing protein (ISS 31.6 0.86 gi|115478034|ref|NP_001062612.1| Os09g0127800 [Oryza sativa (... 31.6 0.86 gi|115435716|ref|NP_001042616.1| Os01g0254100 [Oryza sativa (... 31.6 0.86 gi|45357045|gb|AAS58474.1| coatomer alpha subunit [Hordeum vulga 31.6 0.86 gi|21539573|gb|AAM53339.1| WD40-repeat protein [Arabidopsis thal 31.6 0.86 gi|30686005|ref|NP_568338.2| TOZ (TORMOZEMBRYO DEFECTIVE); nu... 31.6 0.86 gi|15810485|gb|AAL07130.1| putative WD40-repeat protein [Arab... 31.6 0.86 gi|115454911|ref|NP_001051056.1| Os03g0711400 [Oryza sativa (... 31.6 0.86 gi|13324789|gb|AAK18837.1|AC082645_7 putative alpha-coat prot... 31.6 0.86 gi|115434454|ref|NP_001041985.1| Os01g0141700 [Oryza sativa (... 31.6 0.86 gi|15239575|ref|NP_200231.1| signal transducer [Arabidopsis t... 31.6 0.86 gi|10798819|dbj|BAB16450.1| UV-damaged DNA binding protein 2 ... 31.6 0.86
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 88 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 146 Length of database: 101054579 Length adjustment: 22 Effective length of query: 124 Effective length of database: 94820901 Effective search space: 2465343426 Effective search space used: 2465343426 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)