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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168925927-8169-122133715715.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig12
Length=514

Distribution of 29 Blast Hits on the Query Sequence


Related Structures

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|3122703|sp|O22644|RL23A_FRIAG  60S ribosomal protein L23A >...   188    8e-48
gi|7340791|emb|CAA63107.1|  ribosomal protein L23 [Spinacia olera   182    6e-46
gi|7711063|emb|CAA63112.1|  ribosomal protein L23 [Spinacia olera   179    5e-45
gi|585876|sp|Q07761|RL23A_TOBAC  60S ribosomal protein L23a (L...   178    1e-44
gi|115436432|ref|NP_001042974.1|  Os01g0348700 [Oryza sativa (...   177    2e-44 Gene info
gi|49036456|sp|Q9AT35|RL23A_DAUCA  60S ribosomal protein L23a ...   176    4e-44
gi|115459252|ref|NP_001053226.1|  Os04g0501000 [Oryza sativa (...   174    2e-43 Gene info
gi|90265143|emb|CAC09511.2|  H0711G06.17 [Oryza sativa (indica...   174    2e-43
gi|76573339|gb|ABA46774.1|  ribosomal protein L25-like protein [S   173    3e-43 UniGene info
gi|110590379|pdb|2GO5|4  Chain 4, Structure Of Signal Recognit...   172    6e-43 Related structures
gi|83032249|gb|ABB97038.1|  unknown [Brassica rapa]                 171    2e-42
gi|15225470|ref|NP_181478.1|  ATRPL23A (RIBOSOMAL PROTEIN L23A...   167    1e-41 UniGene infoGene info
gi|21592339|gb|AAM64290.1|  60S ribosomal protein L23A [Arabidops   167    2e-41 UniGene info
gi|2654122|gb|AAB87692.1|  ribosomal protein L23a [Arabidopsis th   166    3e-41 UniGene info
gi|15233226|ref|NP_191088.1|  RNA binding / structural constit...   166    3e-41 UniGene infoGene info
gi|3264605|gb|AAC24573.1|  ribosomal protein L25 [Zea mays]         143    4e-34 UniGene infoGene info
gi|116059434|emb|CAL55141.1|  60s ribosomal protein L23 (ISS) [Os  97.8    2e-20
gi|7340796|emb|CAA62040.1|  Chloroplast ribosomal protein L23 [Sp  83.2    5e-16
gi|1084308|pir||S46383  ribosomal protein L23 - spinach            46.2    6e-05
gi|557995|gb|AAB31174.1|  L23=50 S ribosomal subunit protein {...  35.4    0.11 
gi|108796881|ref|YP_636179.1|  ribosomal protein L23 [Pseudend...  32.7    0.74  Gene info
gi|115350004|ref|YP_764389.1|  ribosomal protein L23 [Stigeocl...  32.0    1.3   Gene info
gi|108744234|gb|ABD62234.1|  ribosomal protein L23 [Chlorokybus a  31.6    1.6  
gi|108773369|ref|YP_635831.1|  ribosomal protein L23 [Oltmanns...  31.2    2.1   Gene info
gi|4388821|gb|AAD19776.1|  Mutator-like transposase [Arabidopsis   30.0    4.8  
gi|11466369|ref|NP_038372.1|  ribosomal protein L23 [Mesostigm...  30.0    4.8   Gene info
gi|7524932|ref|NP_045934.1|  ribosomal protein L23 [Chlorella ...  30.0    4.8   Gene info
gi|115473975|ref|NP_001060586.1|  Os07g0669200 [Oryza sativa (...  29.6    6.2   Gene info
gi|108707924|gb|ABF95719.1|  hypothetical protein LOC_Os03g209...  29.3    8.1
Alignments

>gi|3122703|sp|O22644|RL23A_FRIAG  60S ribosomal protein L23A
 gi|2641201|gb|AAB86852.1|  ribosomal protein L23a [Fritillaria agrestis]
Length=154

 Score =  188 bits (478),  Expect = 8e-48
 Identities = 102/119 (85%), Positives = 105/119 (88%), Gaps = 0/119 (0%)
 Frame = +3

Query  156  SGASSLKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAM  335
            SG S+L+KK KKIRTSVTFHRPKTLKK+RNPKYPRISAPPRNKLD YQILKYPLTTESAM
Sbjct  26   SGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAM  85

Query  336  KKIEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            KKIEDNNTLVFIVDIRA  KKIKAAV   YDIQ KKVNTLIRPDGT  AYV  TP YDA
Sbjct  86   KKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDA  144


>gi|7340791|emb|CAA63107.1|  ribosomal protein L23 [Spinacia oleracea]
Length=155

 Score =  182 bits (462),  Expect = 6e-46
 Identities = 101/120 (84%), Positives = 104/120 (86%), Gaps = 1/120 (0%)
 Frame = +3

Query  156  SGASSLKKK-TKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESA  332
            SGAS+LKKK +KKIRT VTFHRPKT KKERNPKYPRISA PRNKLD YQILK+PLTTESA
Sbjct  26   SGASTLKKKASKKIRTKVTFHRPKTFKKERNPKYPRISATPRNKLDHYQILKFPLTTESA  85

Query  333  MKKIEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            MKKIEDNNTLVFIVDIRA  KKIK AV   YDIQAKKVNTLIRPDGT  AYV  TP YDA
Sbjct  86   MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDA  145


>gi|7711063|emb|CAA63112.1|  ribosomal protein L23 [Spinacia oleracea]
Length=155

 Score =  179 bits (454),  Expect = 5e-45
 Identities = 99/120 (82%), Positives = 103/120 (85%), Gaps = 1/120 (0%)
 Frame = +3

Query  156  SGASSLKKK-TKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESA  332
            SG++ LKKK +KKIRT VTFHRPKT KKERNPKYPRISA PRNKLD YQILKYPLTTESA
Sbjct  26   SGSNILKKKASKKIRTKVTFHRPKTFKKERNPKYPRISATPRNKLDHYQILKYPLTTESA  85

Query  333  MKKIEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            MKKIEDNNTLVFIVDIRA  KKIK AV   YDIQ+KKVNTLIRPDGT  AYV  TP YDA
Sbjct  86   MKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQSKKVNTLIRPDGTKKAYVRLTPDYDA  145


>gi|585876|sp|Q07761|RL23A_TOBAC  60S ribosomal protein L23a (L25)
 gi|310935|gb|AAA53296.1| UniGene info 60S ribosomal protein L25
Length=154

 Score =  178 bits (451),  Expect = 1e-44
 Identities = 96/116 (82%), Positives = 101/116 (87%), Gaps = 0/116 (0%)
 Frame = +3

Query  165  SSLKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKI  344
            S+LKKK++KIRT VTFHRPKTLKK+RNPKYPRISAP RNKLDQY ILKYPLTTESAMKKI
Sbjct  29   STLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPGRNKLDQYGILKYPLTTESAMKKI  88

Query  345  EDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            EDNNTLVFIVDI+A  KKIK AV   YDIQ KKVNTLIRPDGT  AYV  TP YDA
Sbjct  89   EDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDA  144


>gi|115436432|ref|NP_001042974.1| Gene info Os01g0348700 [Oryza sativa (japonica cultivar-group)]
 gi|15290206|dbj|BAB63895.1| Gene info putative 60S ribosomal protein L23A [Oryza sativa (japonica cultivar-group)]
 gi|21104815|dbj|BAB93400.1| Gene info putative 60S ribosomal protein L23A [Oryza sativa (japonica cultivar-group)]
 gi|113532505|dbj|BAF04888.1| Gene info Os01g0348700 [Oryza sativa (japonica cultivar-group)]
Length=152

 Score =  177 bits (448),  Expect = 2e-44
 Identities = 95/117 (81%), Positives = 103/117 (88%), Gaps = 0/117 (0%)
 Frame = +3

Query  162  ASSLKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKK  341
            + S+K+K+KKIRTSVTFHRPKTLKK R+PKYPR+SAP RNKLDQYQILKYPLTTESAMKK
Sbjct  26   SGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKK  85

Query  342  IEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            IEDNNTLVFIVD++A  KKIKAAV   YDIQAKKVNTLIRPDG   AYV  TP YDA
Sbjct  86   IEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDA  142


>gi|49036456|sp|Q9AT35|RL23A_DAUCA  60S ribosomal protein L23a
 gi|13560777|gb|AAK30202.1|AF349961_1  ribosome protein L23a [Daucus carota]
Length=154

 Score =  176 bits (446),  Expect = 4e-44
 Identities = 95/112 (84%), Positives = 97/112 (86%), Gaps = 0/112 (0%)
 Frame = +3

Query  177  KKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIEDNN  356
            KK KKIRTSVTFHRP+TL K+RNPKYPRISA PRNKLDQYQILKYPLTTESAMKKIEDNN
Sbjct  33   KKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNN  92

Query  357  TLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            TLVFIVDIRA  KKIK AV   YDIQ KKVNTLIRPDGT  AYV  TP YDA
Sbjct  93   TLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDA  144


>gi|115459252|ref|NP_001053226.1| Gene info Os04g0501000 [Oryza sativa (japonica cultivar-group)]
 gi|70663909|emb|CAE01636.3| Gene info OSJNBa0029H02.21 [Oryza sativa (japonica cultivar-group)]
 gi|113564797|dbj|BAF15140.1| Gene info Os04g0501000 [Oryza sativa (japonica cultivar-group)]
Length=192

 Score =  174 bits (440),  Expect = 2e-43
 Identities = 94/117 (80%), Positives = 100/117 (85%), Gaps = 0/117 (0%)
 Frame = +3

Query  162  ASSLKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKK  341
            + + KK TKKIRTSVTFHRPKTLKK R+PKYPR+S P RNKLDQYQILKYPLTTESAMKK
Sbjct  66   SGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTTESAMKK  125

Query  342  IEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            IEDNNTLVFIVD++A  KKIKAAV   YDIQAKKVNTLIRPDG   AYV  TP YDA
Sbjct  126  IEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDA  182


>gi|90265143|emb|CAC09511.2|  H0711G06.17 [Oryza sativa (indica cultivar-group)]
 gi|116310754|emb|CAH67548.1|  H0311C03.2 [Oryza sativa (indica cultivar-group)]
Length=152

 Score =  174 bits (440),  Expect = 2e-43
 Identities = 94/117 (80%), Positives = 100/117 (85%), Gaps = 0/117 (0%)
 Frame = +3

Query  162  ASSLKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKK  341
            + + KK TKKIRTSVTFHRPKTLKK R+PKYPR+S P RNKLDQYQILKYPLTTESAMKK
Sbjct  26   SGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTTESAMKK  85

Query  342  IEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            IEDNNTLVFIVD++A  KKIKAAV   YDIQAKKVNTLIRPDG   AYV  TP YDA
Sbjct  86   IEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDA  142


>gi|76573339|gb|ABA46774.1| UniGene info ribosomal protein L25-like protein [Solanum tuberosum]
Length=153

 Score =  173 bits (438),  Expect = 3e-43
 Identities = 92/116 (79%), Positives = 101/116 (87%), Gaps = 0/116 (0%)
 Frame = +3

Query  165  SSLKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKI  344
            S+ KKK++KIRT VTFHRP+TLKK+R+PKYPR+SAP RNKLDQY ILKYPLTTESAMKKI
Sbjct  28   STFKKKSQKIRTKVTFHRPRTLKKDRSPKYPRVSAPGRNKLDQYAILKYPLTTESAMKKI  87

Query  345  EDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            EDNNTLVFIVDI+A  KKIKAAV   YDIQ KK+NTLIRPDGT  AYV  TP YDA
Sbjct  88   EDNNTLVFIVDIKADKKKIKAAVKKMYDIQTKKINTLIRPDGTKKAYVRLTPDYDA  143


>gi|110590379|pdb|2GO5|4 Related structures Chain 4, Structure Of Signal Recognition Particle Receptor (Sr) 
In Complex With Signal Recognition Particle (Srp) And Ribosome 
Nascent Chain Complex
 gi|119390381|pdb|2J37|4 Related structures Chain 4, Model Of Mammalian Srp Bound To 80s Rncs
Length=152

 Score =  172 bits (436),  Expect = 6e-43
 Identities = 94/117 (80%), Positives = 99/117 (84%), Gaps = 0/117 (0%)
 Frame = +3

Query  162  ASSLKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKK  341
            + S+KK  KKIRTSVTFHRPKTL K R+PKYPRIS P RNKLDQYQILKYPLTTESAMKK
Sbjct  26   SGSIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKK  85

Query  342  IEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            IEDNNTLVFIVD++A  KKIKAAV   YDIQAKKVNTLIRPDG   AYV  TP YDA
Sbjct  86   IEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDA  142


>gi|83032249|gb|ABB97038.1|  unknown [Brassica rapa]
Length=154

 Score =  171 bits (432),  Expect = 2e-42
 Identities = 93/114 (81%), Positives = 95/114 (83%), Gaps = 0/114 (0%)
 Frame = +3

Query  171  LKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIED  350
            +KKK KKIRT VTFHRPKTL K R+PKYPRISA PRNKLD Y ILKYPLTTESAMKKIED
Sbjct  31   IKKKAKKIRTKVTFHRPKTLTKARDPKYPRISATPRNKLDHYGILKYPLTTESAMKKIED  90

Query  351  NNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            NNTLVFIVDIRA  KKIK AV   YDIQ KKVNTLIRPDGT  AYV  TP YDA
Sbjct  91   NNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDA  144


>gi|15225470|ref|NP_181478.1| UniGene infoGene info ATRPL23A (RIBOSOMAL PROTEIN L23A); RNA binding / structural constituent 
of ribosome [Arabidopsis thaliana]
 gi|73914091|sp|Q8LD46|R23A1_ARATH Gene info 60S ribosomal protein L23a-1 (AtRPL23A-1)
 gi|11762271|gb|AAG40408.1|AF325056_1 UniGene infoGene info At2g39460 [Arabidopsis thaliana]
 gi|3355475|gb|AAC27837.1| Gene info 60S ribosomal protein L23A [Arabidopsis thaliana]
 gi|14335112|gb|AAK59835.1| UniGene infoGene info At2g39460/F12L6.12 [Arabidopsis thaliana]
 gi|14532452|gb|AAK63954.1| UniGene infoGene info At2g39460/F12L6.12 [Arabidopsis thaliana]
 gi|16974523|gb|AAL31171.1| UniGene infoGene info At2g39460/F12L6.12 [Arabidopsis thaliana]
Length=154

 Score =  167 bits (424),  Expect = 1e-41
 Identities = 92/115 (80%), Positives = 94/115 (81%), Gaps = 0/115 (0%)
 Frame = +3

Query  168  SLKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIE  347
            + KKK KKIRT VTFHRPKTL K R  KYP+ISA PRNKLD YQILKYPLTTESAMKKIE
Sbjct  30   AFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIE  89

Query  348  DNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            DNNTLVFIVDIRA  KKIK AV   YDIQ KKVNTLIRPDGT  AYV  TP YDA
Sbjct  90   DNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDA  144


>gi|21592339|gb|AAM64290.1| UniGene info 60S ribosomal protein L23A [Arabidopsis thaliana]
Length=154

 Score =  167 bits (423),  Expect = 2e-41
 Identities = 92/115 (80%), Positives = 94/115 (81%), Gaps = 0/115 (0%)
 Frame = +3

Query  168  SLKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIE  347
            + KKK KKIRT VTFHRPKTL K R  KYP+ISA PRNKLD YQILKYPLTTESAMKKIE
Sbjct  30   AFKKKGKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIE  89

Query  348  DNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            DNNTLVFIVDIRA  KKIK AV   YDIQ KKVNTLIRPDGT  AYV  TP YDA
Sbjct  90   DNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDA  144


>gi|2654122|gb|AAB87692.1| UniGene info ribosomal protein L23a [Arabidopsis thaliana]
Length=154

 Score =  166 bits (421),  Expect = 3e-41
 Identities = 91/115 (79%), Positives = 94/115 (81%), Gaps = 0/115 (0%)
 Frame = +3

Query  168  SLKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIE  347
            + KKK KKIRT VTFHRPKTL K R  KYP+ISA PRNKLD YQILKYPLTTESAMKKIE
Sbjct  30   AFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIE  89

Query  348  DNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            DNNTLVFIVDIRA  KKIK AV   YDIQ KKVNTLIRPDGT  AY+  TP YDA
Sbjct  90   DNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYMRLTPDYDA  144


>gi|15233226|ref|NP_191088.1| UniGene infoGene info RNA binding / structural constituent of ribosome [Arabidopsis 
thaliana]
 gi|73914092|sp|Q9M3C3|R23A2_ARATH Gene info 60S ribosomal protein L23a-2
 gi|7019661|emb|CAB75762.1| Gene info ribosomal L23a-like protein [Arabidopsis thaliana]
 gi|15215831|gb|AAK91460.1| UniGene infoGene info AT3g55280/T26I12_160 [Arabidopsis thaliana]
 gi|21553861|gb|AAM62954.1| UniGene infoGene info ribosomal L23a-like protein [Arabidopsis thaliana]
 gi|23308155|gb|AAN18047.1| UniGene infoGene info At3g55280/T26I12_160 [Arabidopsis thaliana]
Length=154

 Score =  166 bits (421),  Expect = 3e-41
 Identities = 91/114 (79%), Positives = 93/114 (81%), Gaps = 0/114 (0%)
 Frame = +3

Query  171  LKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIED  350
            +KK  KKIRT VTFHRPKTL   R PKYP+ISA PRNKLD YQILKYPLTTESAMKKIED
Sbjct  31   VKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIED  90

Query  351  NNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            NNTLVFIVDIRA  KKIK AV   YDIQ KKVNTLIRPDGT  AYV  TP YDA
Sbjct  91   NNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDA  144


>gi|3264605|gb|AAC24573.1| UniGene infoGene info ribosomal protein L25 [Zea mays]
Length=109

 Score =  143 bits (360),  Expect = 4e-34
 Identities = 80/99 (80%), Positives = 83/99 (83%), Gaps = 0/99 (0%)
 Frame = +3

Query  216  RPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRaxxk  395
            RP TLKK R+PKYPRIS   RNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVD++A  K
Sbjct  1    RPTTLKKARDPKYPRISTTGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKK  60

Query  396  kikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
            KIKAAV   YDIQAKKVNTLIRPDG   AYV  TP YDA
Sbjct  61   KIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDA  99


>gi|116059434|emb|CAL55141.1|  60s ribosomal protein L23 (ISS) [Ostreococcus tauri]
Length=259

 Score = 97.8 bits (242),  Expect = 2e-20
 Identities = 59/127 (46%), Positives = 74/127 (58%), Gaps = 24/127 (18%)
 Frame = +3

Query  204  VTFHRPKTLKKERNPKYPRISAPPRNKLDQY------------------------QILKY  311
            +T +RP+TLK ER P YPR+S P + KLD++                        QILK+
Sbjct  123  LTVYRPRTLKHERKPAYPRVSVPSKPKLDRFSVPEDSIDGRETDRRTLSSLNHSSQILKH  182

Query  312  PLTTESAMKKIEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXXAYVX  491
            PL  E+A+ K E+NNTLVFIVD RA  ++IK AV   YDI   KVNTLIRP+G   AY  
Sbjct  183  PLANETALAKTENNNTLVFIVDARANKRQIKEAVKRMYDIDCAKVNTLIRPNGDKKAYCR  242

Query  492  XTPXYDA  512
             T  +DA
Sbjct  243  LTADHDA  249


>gi|7340796|emb|CAA62040.1|  Chloroplast ribosomal protein L23 [Spinacia oleracea]
Length=198

 Score = 83.2 bits (204),  Expect = 5e-16
 Identities = 47/99 (47%), Positives = 64/99 (64%), Gaps = 6/99 (6%)
 Frame = +3

Query  216  RPKTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRaxxk  395
            +PKT KK +  KYPR        LD YQIL+ P+ TE+A+K I D N+L+F VD+RA  K
Sbjct  92   QPKTSKKAKKLKYPR------RILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKK  145

Query  396  kikaaVXXXYDIQAKKVNTLIRPDGTXXAYVXXTPXYDA  512
             I+ A+   + ++ +KVNTLIRPDGT  AY+     Y+A
Sbjct  146  MIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNA  184


>gi|1084308|pir||S46383  ribosomal protein L23 - spinach
Length=101

 Score = 46.2 bits (108),  Expect = 6e-05
 Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 28/100 (28%)
 Frame = +3

Query  222  KTLKKERNPKYPRISAPPRNKLDQYQILKYP--LTTESAMKKIEDNNTLVFIVDIRaxxk  395
            KT KK +  KYPR        LD YQ ++    +  E+A+K I D N+L+F V +R    
Sbjct  18   KTSKKAKILKYPR------RVLDPYQKVRADKKMIREAAIKNIADENSLLFGVKVR----  67

Query  396  kikaaVXXXYDIQAKKVNTLIRPDGT-XXAYVXXTPXYDA  512
                           KVNTLIRPDGT   AY+     Y+A
Sbjct  68   ---------------KVNTLIRPDGTEKKAYIMINKEYNA  92


>gi|557995|gb|AAB31174.1|  L23=50 S ribosomal subunit protein {N-terminal, internal fragment} 
[Spinacia oleracea=spinach, cv Alwaro, Peptide Chloroplast 
Partial, 53 aa, segment 2 of 2]
Length=53

 Score = 35.4 bits (80),  Expect = 0.11
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 20/63 (31%)
 Frame = +3

Query  327  SAMKKIEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGT-XXAYVXXTPX  503
            +A+K I D N+L+F V +R                   KVNTLIRPDGT   AY+     
Sbjct  1    AAIKNIADENSLLFGVKVR-------------------KVNTLIRPDGTEKKAYIMINKE  41

Query  504  YDA  512
            Y+A
Sbjct  42   YNA  44


>gi|108796881|ref|YP_636179.1| Gene info ribosomal protein L23 [Pseudendoclonium akinetum]
 gi|56159579|gb|AAV80603.1| Gene info ribosomal protein L23 [Pseudendoclonium akinetum]
Length=94

 Score = 32.7 bits (73),  Expect = 0.74
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query  300  ILKYPLTTESAMKKIEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRP  464
            ++KYP++TE + + IE N    F VD+R    +I+      +DI+   VNT + P
Sbjct  4    LVKYPVSTEKSYRLIEKNQ-YTFDVDVRLTKPQIRKVFENLFDIKVLAVNTHLLP  57


>gi|115350004|ref|YP_764389.1| Gene info ribosomal protein L23 [Stigeoclonium helveticum]
 gi|98990218|gb|ABF60185.1| Gene info ribosomal protein L23 [Stigeoclonium helveticum]
Length=118

 Score = 32.0 bits (71),  Expect = 1.3
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query  300  ILKYPLTTESAMKKIEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRPDGTXX  479
            ++KYP+    + + +  NN  +F VD+R    +IK  +   +++    VNT  RP     
Sbjct  4    LIKYPVINFKSYRALVLNNQYMFNVDLRLTKPQIKKLIEQYFEVNVISVNT-HRPPRKKR  62

Query  480  AYVXXTPXY  506
             Y+  +P Y
Sbjct  63   LYIQTSPGY  71


>gi|108744234|gb|ABD62234.1|  ribosomal protein L23 [Chlorokybus atmophyticus]
Length=87

 Score = 31.6 bits (70),  Expect = 1.6
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query  300  ILKYPLTTESAMKKIEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNTLIRP  464
            ++KYP+ TE A + + DNN   F VD +A    IKA +   + ++   VNT I P
Sbjct  3    LVKYPVLTEKATRLL-DNNQYTFDVDPKATKVTIKALIENLFQVKVVSVNTHIPP  56


>gi|108773369|ref|YP_635831.1| Gene info ribosomal protein L23 [Oltmannsiellopsis viridis]
 gi|82541951|gb|ABB81992.1| Gene info ribosomal protein L23 [Oltmannsiellopsis viridis]
Length=90

 Score = 31.2 bits (69),  Expect = 2.1
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query  300  ILKYPLTTESAMKKIEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNT  452
            ++KYP+ TE + + IE N    F VD+R    +IK  +   +D+    VNT
Sbjct  4    LVKYPVITEKSCRLIEKNQ-YTFDVDLRLTKPQIKELIEGFFDVNVTAVNT  53


>gi|4388821|gb|AAD19776.1|  Mutator-like transposase [Arabidopsis thaliana]
Length=597

 Score = 30.0 bits (66),  Expect = 4.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 0/31 (0%)
 Frame = -2

Query  198  YGSSWSSFSGKKPLTSQPWQPSKPELCHQAS  106
            +G SW    G+  + SQP QPS+P    Q S
Sbjct  479  HGQSWQGSQGEPSVASQPAQPSQPSQPSQPS  509


>gi|11466369|ref|NP_038372.1| Gene info ribosomal protein L23 [Mesostigma viride]
 gi|14548226|sp|Q9MUT8|RK23_MESVI Gene info Chloroplast 50S ribosomal protein L23
 gi|7259512|gb|AAF43813.1|AF166114_25 Gene info ribosomal protein L23 [Mesostigma viride]
Length=92

 Score = 30.0 bits (66),  Expect = 4.8
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query  300  ILKYPLTTESAMKKIEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNT  452
            I+KYP+ TE A + +E NN   F VD +A    IKA +   ++++   VNT
Sbjct  4    IVKYPVLTEKATRLLE-NNQYTFDVDPKANKITIKALIEDFFNVKVLSVNT  53


>gi|7524932|ref|NP_045934.1| Gene info ribosomal protein L23 [Chlorella vulgaris]
 gi|3024549|sp|P56368|RK23_CHLVU Gene info Chloroplast 50S ribosomal protein L23
 gi|2224526|dbj|BAA58010.1| Gene info 50S ribosomal protein L23 [Chlorella vulgaris]
Length=86

 Score = 30.0 bits (66),  Expect = 4.8
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 0/51 (0%)
 Frame = +3

Query  300  ILKYPLTTESAMKKIEDNNTLVFIVDIRaxxkkikaaVXXXYDIQAKKVNT  452
            ++KYP+       ++ +NN L F VD+R    +I+  +   ++++   VNT
Sbjct  5    LVKYPVIRTEKTTRLVENNQLSFDVDVRITKPQIRKIIEEFFNVKVLAVNT  55


>gi|115473975|ref|NP_001060586.1| Gene info Os07g0669200 [Oryza sativa (japonica cultivar-group)]
 gi|113612122|dbj|BAF22500.1| Gene info Os07g0669200 [Oryza sativa (japonica cultivar-group)]
Length=752

 Score = 29.6 bits (65),  Expect = 6.2
 Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 0/21 (0%)
 Frame = +2

Query  131  FEGCQGCEVRGFFPEKEDQED  193
            FEG +G E R F P+++D++D
Sbjct  186  FEGAKGREARAFLPDEDDEDD  206


>gi|108707924|gb|ABF95719.1|  hypothetical protein LOC_Os03g20990 [Oryza sativa (japonica cultivar-group)]
Length=204

 Score = 29.3 bits (64),  Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 0/30 (0%)
 Frame = +3

Query  240  RNPKYPRISAPPRNKLDQYQILKYPLTTES  329
            +NP  PR+SAP R  +D    ++YP    S
Sbjct  40   KNPSLPRLSAPSRRDVDGATPMRYPTAGRS  69







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 371
Number of extensions: 6
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 514
Length of database: 101054579
Length adjustment: 105
Effective length of query: 409
Effective length of database: 71302934
Effective search space: 4705993644
Effective search space used: 4705993644
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)