Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168925856-32673-125589041949.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig13 Length=541
Score E Sequences producing significant alignments: (Bits) Value gi|3402282|emb|CAA04449.1| proline-rich protein [Solanum tuberos 108 9e-24 gi|115481142|ref|NP_001064164.1| Os10g0148100 [Oryza sativa (... 105 8e-23 gi|6782440|gb|AAF28387.1|AF151216_1 proline-rich protein [Nicoti 101 2e-21 gi|115451873|ref|NP_001049537.1| Os03g0245200 [Oryza sativa (... 98.2 2e-20 gi|7620015|gb|AAF64551.1|AF110988_1 proline-rich protein 4 [Arab 93.6 4e-19 gi|6782442|gb|AAF28388.1|AF151217_1 proline-rich protein [Ara... 93.6 4e-19 gi|15234785|ref|NP_195588.1| PRP4 (PROLINE-RICH PROTEIN 4) [A... 93.6 4e-19 gi|115481164|ref|NP_001064175.1| Os10g0150600 [Oryza sativa (... 88.6 1e-17 gi|115451875|ref|NP_001049538.1| Os03g0245300 [Oryza sativa (... 87.4 3e-17 gi|115481162|ref|NP_001064174.1| Os10g0150400 [Oryza sativa (... 86.3 6e-17 gi|18676394|dbj|BAB84823.1| proline-rich protein [Oryza sativa] 85.5 1e-16 gi|115481150|ref|NP_001064168.1| Os10g0149000 [Oryza sativa (... 85.1 1e-16 gi|14488308|gb|AAK63889.1|AC084884_4 Putative proline-rich pr... 85.1 1e-16 gi|115481168|ref|NP_001064177.1| Os10g0150800 [Oryza sativa (... 84.3 2e-16 gi|78707783|gb|ABB46758.1| proline-rich protein, putative, ex... 84.0 3e-16 gi|115481166|ref|NP_001064176.1| Os10g0150700 [Oryza sativa (... 84.0 3e-16 gi|7620011|gb|AAF64549.1|AF110986_1 proline-rich protein 2 [Arab 83.6 4e-16 gi|115481152|ref|NP_001064169.1| Os10g0149400 [Oryza sativa (... 83.6 4e-16 gi|15226468|ref|NP_179710.1| ATPRP2 (PROLINE-RICH PROTEIN 2) ... 82.8 7e-16 gi|115481156|ref|NP_001064171.1| Os10g0149800 [Oryza sativa (... 82.4 9e-16 gi|6689616|emb|CAB65536.1| proline-rich protein [Zea mays] 82.0 1e-15 gi|115481158|ref|NP_001064172.1| Os10g0150000 [Oryza sativa (... 81.6 2e-15 gi|115481146|ref|NP_001064166.1| Os10g0148700 [Oryza sativa (... 75.9 8e-14 gi|115481160|ref|NP_001064173.1| Os10g0150300 [Oryza sativa (... 72.4 9e-13 gi|14488307|gb|AAK63888.1|AC084884_3 Putative proline-rich pr... 63.9 3e-10 gi|50251873|dbj|BAD27801.1| hypothetical protein [Oryza sativ... 33.1 0.63 gi|115481438|ref|NP_001064312.1| Os10g0205700 [Oryza sativa (... 32.3 1.1 gi|119393868|gb|ABL74450.1| heat shock factor 1 [Chlamydomonas r 32.0 1.4 gi|117582062|gb|ABK41475.1| glutathione S-transferase 1 [Triticu 29.6 6.9 gi|21553729|gb|AAM62822.1| unknown [Arabidopsis thaliana] 29.3 9.1 gi|22330940|ref|NP_683542.1| unknown protein [Arabidopsis thalia 29.3 9.1 gi|18422820|ref|NP_568686.1| unknown protein [Arabidopsis tha... 29.3 9.1
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 317 Number of extensions: 1 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 541 Length of database: 101054579 Length adjustment: 106 Effective length of query: 435 Effective length of database: 71019585 Effective search space: 5255449290 Effective search space used: 5255449290 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)