Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168926702-10917-164457962856.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig23 Length=317
Score E Sequences producing significant alignments: (Bits) Value gi|122044864|sp|P05621|H2B2_WHEAT Histone H2B.2 32.7 0.39 gi|115477036|ref|NP_001062114.1| Os08g0490900 [Oryza sativa (... 32.7 0.39 gi|115465577|ref|NP_001056388.1| Os05g0574300 [Oryza sativa (... 32.7 0.39 gi|115434572|ref|NP_001042044.1| Os01g0152300 [Oryza sativa (... 32.7 0.39 gi|110736103|dbj|BAF00024.1| histone H2B like protein [Arabidops 32.7 0.39 gi|109892195|sp|O65818|H2B2_LYCES Histone H2B.2 (LeH2B-2) 32.7 0.39 gi|108707495|gb|ABF95290.1| Core histone H2A/H2B/H3/H4 family... 32.7 0.39 gi|108860773|sp|Q1SWQ1|H2B2_MEDTR Probable histone H2B.2 >gi|... 32.7 0.39 gi|108860772|sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1 >gi|... 32.7 0.39 gi|108860774|sp|Q1SU99|H2B3_MEDTR Probable histone H2B.3 >gi|... 32.7 0.39 gi|50080248|gb|AAT69583.1| putative histone H2B [Oryza sativa... 32.7 0.39 gi|49659794|gb|AAT68209.1| putative histone H2B [Cynodon dactylo 32.7 0.39 gi|47900320|gb|AAT39167.1| putative histone H2B [Oryza sativa (j 32.7 0.39 gi|56675662|emb|CAA64986.2| Histone H2b homologue [Allium cepa] 32.7 0.39 gi|42565385|gb|AAS20969.1| histone H2B [Hyacinthus orientalis] 32.7 0.39 gi|30024116|emb|CAC84679.1| putative histone H4 [Pinus pinaster] 32.7 0.39 gi|75278465|sp|O65821|H2B1_LYCES Histone H2B.1 (LeH2B-1) >gi|... 32.7 0.39 gi|115440949|ref|NP_001044754.1| Os01g0839500 [Oryza sativa (... 32.7 0.39 gi|18129292|emb|CAC83359.1| histone H2B protein [Pinus pinaster] 32.7 0.39 gi|75278464|sp|O65819|H2B3_LYCES Histone H2B.3 (LeH2B-3) >gi|... 32.7 0.39 gi|3021483|emb|CAA12230.1| histone H2B-2 [Solanum lycopersicum] 32.7 0.39 gi|21617908|gb|AAM66958.1| histone H2B [Arabidopsis thaliana] 32.7 0.39 gi|7635498|emb|CAB88668.1| histone H2B [Cicer arietinum] 32.7 0.39 gi|13898838|gb|AAK48893.1|AF356821_1 histone H2B-5 [Lolium peren 32.7 0.39 gi|13898834|gb|AAK48891.1|AF356819_1 histone H2B-3 [Lolium peren 32.7 0.39 gi|15231304|ref|NP_190184.1| DNA binding [Arabidopsis thalian... 32.7 0.39 gi|563329|emb|CAA57778.1| histone 2B [Asparagus officinalis] 32.7 0.39 gi|15241858|ref|NP_195877.1| DNA binding [Arabidopsis thalian... 32.7 0.39 gi|1617013|emb|CAA69025.1| histone H2B like protein [Arabidopsis 32.7 0.39 gi|21554180|gb|AAM63259.1| histone H2B-like protein [Arabidopsis 32.7 0.39 gi|15231313|ref|NP_190189.1| DNA binding [Arabidopsis thalian... 32.7 0.39 gi|13898832|gb|AAK48890.1|AF356818_1 histone H2B-2 [Lolium peren 32.7 0.39 gi|2935450|gb|AAC05126.1| histone H2B [Malus x domestica] 32.7 0.39 gi|82400146|gb|ABB72812.1| histone H2B-like protein [Solanum tub 32.7 0.39 gi|81074705|gb|ABB55372.1| histone H2B-like [Solanum tuberosum] 32.7 0.39 gi|15223016|ref|NP_172258.1| DNA binding [Arabidopsis thalian... 32.7 0.39 gi|15226943|ref|NP_180440.1| DNA binding [Arabidopsis thalian... 32.7 0.39 gi|15224292|ref|NP_181283.1| DNA binding [Arabidopsis thalian... 32.7 0.39 gi|42408493|dbj|BAD09673.1| putative Histone H2B.2 [Oryza sativa 32.7 0.39 gi|75102841|sp|Q43217|H2B3_WHEAT Histone H2B.3 (wcH2B-8) >gi|... 32.7 0.39 gi|7387727|sp|O49118|H2B_CAPAN Histone H2B (CaH2B) >gi|274671... 32.7 0.39 gi|115434582|ref|NP_001042049.1| Os01g0152900 [Oryza sativa (... 32.7 0.39 gi|15231854|ref|NP_190933.1| DNA binding [Arabidopsis thalian... 32.7 0.39 gi|399853|sp|P30755|H2B1_MAIZE Histone H2B.1 >gi|22323|emb|CAA40 32.7 0.39 gi|115434586|ref|NP_001042051.1| Os01g0153100 [Oryza sativa (... 32.7 0.39 gi|1199969|emb|CAA64987.1| Histone H2b homologue [Allium cepa] 32.7 0.39 gi|3913804|sp|Q43261|H2B3_MAIZE Histone H2B.3 >gi|577825|emb|CAA 32.7 0.39 gi|1708107|sp|P54348|H2B5_MAIZE Histone H2B.5 (H2B) >gi|473605|g 32.7 0.39 gi|15238563|ref|NP_200799.1| DNA binding [Arabidopsis thalian... 32.7 0.39 gi|75102840|sp|Q43216|H2B5_WHEAT Histone H2B.5 (wcH2B-6) >gi|... 32.7 0.39 gi|115434590|ref|NP_001042053.1| Os01g0153300 [Oryza sativa (... 32.7 0.39 gi|1346251|sp|P49120|H2B4_MAIZE Histone H2B.4 >gi|577819|emb|CAA 32.7 0.39 gi|9663983|dbj|BAB03624.1| putative histone H2B [Oryza sativa... 32.7 0.39 gi|9663987|dbj|BAB03628.1| putative histone H2B [Oryza sativa... 32.7 0.39 gi|7387726|sp|O22582|H2B_GOSHI Histone H2B >gi|2558962|gb|AAB... 32.7 0.39 gi|15237148|ref|NP_197679.1| DNA binding [Arabidopsis thalian... 32.7 0.39 gi|115434536|ref|NP_001042026.1| Os01g0149600 [Oryza sativa (... 32.7 0.39 gi|13872898|dbj|BAB44005.1| putative histone H2B [Oryza sativa ( 32.7 0.39 gi|75102839|sp|Q43215|H2B4_WHEAT Histone H2B.4 (H2B153) >gi|5... 32.7 0.39 gi|122022|sp|P27807|H2B1_WHEAT Histone H2B.1 >gi|21801|emb|CA... 32.7 0.39 gi|399854|sp|P30756|H2B2_MAIZE Histone H2B.2 >gi|22325|emb|CAA40 32.7 0.39 gi|15232689|ref|NP_187559.1| DNA binding [Arabidopsis thalian... 32.0 0.66 gi|116060720|emb|CAL57198.1| Histone H2B (ISS) [Ostreococcus tau 31.6 0.86 gi|116059220|emb|CAL54927.1| Histone H2B (ISS) [Ostreococcus tau 31.6 0.86 gi|247309|gb|AAB21816.1| histone H2B [Chlamydomonas reinhardt... 30.8 1.5 gi|1708103|sp|P50565|H2B1_CHLRE Histone H2B.1 (H2B-I) >gi|790702 30.8 1.5 gi|122039|sp|P16867|H2B3_VOLCA Histone H2B.3 (H2B-III) >gi|17... 30.8 1.5 gi|122041|sp|P16868|H2B4_VOLCA Histone H2B.4 (H2B-IV) >gi|170659 30.8 1.5 gi|1708106|sp|P54347|H2B4_CHLRE Histone H2B.4 (H2B-IV) >gi|57148 30.8 1.5 gi|1708105|sp|P54346|H2B3_CHLRE Histone H2B.3 (H2B-III) >gi|5714 30.8 1.5 gi|1708104|sp|P54345|H2B2_CHLRE Histone H2B.2 (H2B-II) >gi|57147 30.8 1.5 gi|122045033|sp||Q99285_9 [Segment 9 of 9] Histone H2B 29.6 3.3 gi|7387729|sp|P93354|H2B_TOBAC Histone H2B >gi|1848210|emb|CA... 29.6 3.3 gi|75319629|sp|Q41575|H2B6_WHEAT Histone H2B.6 (H2B123) >gi|5... 29.3 4.3 gi|13898836|gb|AAK48892.1|AF356820_1 histone H2B-4 [Lolium peren 28.1 9.6
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 47 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 317 Length of database: 101054579 Length adjustment: 74 Effective length of query: 243 Effective length of database: 80086753 Effective search space: 2482689343 Effective search space used: 2482689343 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)