RID=1168927379-1756-70055659620.BLASTQ1, Contig38

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168927379-1756-70055659620.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig38
Length=341

Distribution of 14 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|115448305|ref|NP_001047932.1|  Os02g0717400 [Oryza sativa (...  54.3    1e-07 
gi|42565852|ref|NP_190782.3|  unknown protein [Arabidopsis thalia  48.5    7e-06 
gi|4678943|emb|CAB41334.1|  putative protein [Arabidopsis thalian  43.5    2e-04
gi|115460926|ref|NP_001054063.1|  Os04g0645100 [Oryza sativa (...  31.6    0.87  
gi|90399339|emb|CAJ86110.1|  H0811D08.1 [Oryza sativa (indica cul  31.6    0.87 
gi|38344005|emb|CAE03171.2|  OSJNBa0070O11.2 [Oryza sativa (japon  31.6    0.87  
gi|5103827|gb|AAD39657.1|AC007591_22  ESTs gb|F20110 and gb|F2...  30.8    1.5  
gi|79345548|ref|NP_172981.2|  unknown protein [Arabidopsis thalia  30.8    1.5   
gi|92867765|gb|ABE77904.1|  TPR repeat [Medicago truncatula] >...  30.0    2.5  
gi|4455367|emb|CAB36777.1|  putative protein [Arabidopsis thal...  30.0    2.5  
gi|30687847|ref|NP_194537.2|  unknown protein [Arabidopsis thalia  30.0    2.5   
gi|9665146|gb|AAF97330.1|AC023628_11  Unknown protein [Arabidopsi  28.5    7.4  
gi|42561588|ref|NP_171639.3|  unknown protein [Arabidopsis thalia  28.5    7.4   
gi|34395384|dbj|BAC84544.1|  putative tetratricopeptide repeat...  28.5    7.4

Alignments

 

>gi|115448305|ref|NP_001047932.1|  Os02g0717400 [Oryza sativa (japonica cultivar-group)]
 gi|42408048|dbj|BAD09184.1|  eukaryotic translation initiation factor 3 subunit (eIF-3)-like 
[Oryza sativa (japonica cultivar-group)]
 gi|45735861|dbj|BAD12895.1|  eukaryotic translation initiation factor 3 subunit (eIF-3)-like 
[Oryza sativa (japonica cultivar-group)]
 gi|113537463|dbj|BAF09846.1|  Os02g0717400 [Oryza sativa (japonica cultivar-group)]
Length=1426

 Score = 54.3 bits (129),  Expect = 1e-07
 Identities = 23/32 (71%), Positives = 29/32 (90%), Gaps = 0/32 (0%)
 Frame = +2

Query  2     DILVNQLGEEDSKTQDSENWIKTFKSREQQVN  97
             DILV QLG +DS+T+D+E+W+ TFKSREQQVN
Sbjct  1214  DILVKQLGSDDSRTKDAESWLNTFKSREQQVN  1245


>gi|42565852|ref|NP_190782.3|  unknown protein [Arabidopsis thaliana]
Length=1403

 Score = 48.5 bits (114),  Expect = 7e-06
 Identities = 21/31 (67%), Positives = 27/31 (87%), Gaps = 0/31 (0%)
 Frame = +2

Query  2     DILVNQLGEEDSKTQDSENWIKTFKSREQQV  94
             DILV QLG++DS+T+DS NW+KTFK RE Q+
Sbjct  1217  DILVKQLGDDDSRTRDSLNWMKTFKMRELQM  1247


>gi|4678943|emb|CAB41334.1|  putative protein [Arabidopsis thaliana]
Length=1403

 Score = 43.5 bits (101),  Expect = 2e-04
 Identities = 18/25 (72%), Positives = 23/25 (92%), Gaps = 0/25 (0%)
 Frame = +2

Query  2     DILVNQLGEEDSKTQDSENWIKTFK  76
             DILV QLG++DS+T+DS NW+KTFK
Sbjct  1204  DILVKQLGDDDSRTRDSLNWMKTFK  1228


>gi|115460926|ref|NP_001054063.1|  Os04g0645100 [Oryza sativa (japonica cultivar-group)]
 gi|113565634|dbj|BAF15977.1|  Os04g0645100 [Oryza sativa (japonica cultivar-group)]
Length=1201

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +2

Query  5     ILVNQLGEEDSKTQDSENWIKTFKSR--EQQVNTSFSILKHD  124
             IL  +LG++D +TQD+  W++ F+S+  EQQ      I K D
Sbjct  1088  ILQEKLGQDDLRTQDAAAWLEYFESKALEQQEAARRGIPKPD  1129


>gi|90399339|emb|CAJ86110.1|  H0811D08.1 [Oryza sativa (indica cultivar-group)]
Length=959

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +2

Query  5    ILVNQLGEEDSKTQDSENWIKTFKSR--EQQVNTSFSILKHD  124
            IL  +LG++D +TQD+  W++ F+S+  EQQ      I K D
Sbjct  327  ILQEKLGQDDLRTQDAAAWLEYFESKALEQQEAARRGIPKPD  368


>gi|38344005|emb|CAE03171.2|  OSJNBa0070O11.2 [Oryza sativa (japonica cultivar-group)]
Length=1720

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +2

Query  5     ILVNQLGEEDSKTQDSENWIKTFKSR--EQQVNTSFSILKHD  124
             IL  +LG++D +TQD+  W++ F+S+  EQQ      I K D
Sbjct  1088  ILQEKLGQDDLRTQDAAAWLEYFESKALEQQEAARRGIPKPD  1129


>gi|5103827|gb|AAD39657.1|AC007591_22  ESTs gb|F20110 and gb|F20109 come from this gene. [Arabidopsis 
thaliana]
Length=1604

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +2

Query  5     ILVNQLGEEDSKTQDSENWIKTFKSR--EQQ  91
             IL  +LG +D +TQD+  W++ F+SR  EQQ
Sbjct  1041  ILTAKLGADDLRTQDAAAWLEYFESRAIEQQ  1071


>gi|79345548|ref|NP_172981.2|  unknown protein [Arabidopsis thaliana]
Length=1621

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +2

Query  5     ILVNQLGEEDSKTQDSENWIKTFKSR--EQQ  91
             IL  +LG +D +TQD+  W++ F+SR  EQQ
Sbjct  1058  ILTAKLGADDLRTQDAAAWLEYFESRAIEQQ  1088


>gi|92867765|gb|ABE77904.1|  TPR repeat [Medicago truncatula]
 gi|92874825|gb|ABE83025.1|  TPR repeat [Medicago truncatula]
Length=1638

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +2

Query  5     ILVNQLGEEDSKTQDSENWIKTFKSR--EQQ  91
             IL  +LG ED +TQD+  W++ F+S+  EQQ
Sbjct  1064  ILQAKLGAEDLRTQDAAAWLEYFESKAIEQQ  1094


>gi|4455367|emb|CAB36777.1|  putative protein [Arabidopsis thaliana]
 gi|7269662|emb|CAB79610.1|  putative protein [Arabidopsis thaliana]
Length=1791

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +2

Query  5     ILVNQLGEEDSKTQDSENWIKTFKSR--EQQ  91
             IL  +LG ED +TQD+  W++ F+S+  EQQ
Sbjct  1061  ILQAKLGPEDLRTQDAAAWLEYFESKALEQQ  1091


>gi|30687847|ref|NP_194537.2|  unknown protein [Arabidopsis thaliana]
Length=1660

 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +2

Query  5    ILVNQLGEEDSKTQDSENWIKTFKSR--EQQ  91
            IL  +LG ED +TQD+  W++ F+S+  EQQ
Sbjct  930  ILQAKLGPEDLRTQDAAAWLEYFESKALEQQ  960


>gi|9665146|gb|AAF97330.1|AC023628_11  Unknown protein [Arabidopsis thaliana]
Length=1483

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +2

Query  5    ILVNQLGEEDSKTQDSENWIKTFKSR--EQQ  91
            IL  +LG +D +TQD+  W++ F+S+  EQQ
Sbjct  763  ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQ  793


>gi|42561588|ref|NP_171639.3|  unknown protein [Arabidopsis thaliana]
Length=1797

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +2

Query  5     ILVNQLGEEDSKTQDSENWIKTFKSR--EQQ  91
             IL  +LG +D +TQD+  W++ F+S+  EQQ
Sbjct  1077  ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQ  1107


>gi|34395384|dbj|BAC84544.1|  putative tetratricopeptide repeat(TPR)-containing protein [Oryza 
sativa (japonica cultivar-group)]
 gi|50509533|dbj|BAD31229.1|  putative tetratricopeptide repeat(TPR)-containing protein [Oryza 
sativa (japonica cultivar-group)]
Length=1933

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = +2

Query  5     ILVNQLGEEDSKTQDSENWIKTFKSR--EQQ  91
             IL  +LG +D +TQD+  W++ F+S+  EQQ
Sbjct  1119  ILRAKLGPDDLRTQDAAAWLEYFESKVIEQQ  1149

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 181
Number of extensions: 3
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 341
Length of database: 101054579
Length adjustment: 81
Effective length of query: 260
Effective length of database: 78103310
Effective search space: 2499305920
Effective search space used: 2499305920
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)