Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168923764-13805-147445386983.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig6 Length=474
Score E Sequences producing significant alignments: (Bits) Value gi|115452145|ref|NP_001049673.1| Os03g0268400 [Oryza sativa (... 149 3e-36 gi|115441031|ref|NP_001044795.1| Os01g0847200 [Oryza sativa (... 145 6e-35 gi|115475447|ref|NP_001061320.1| Os08g0237200 [Oryza sativa (... 145 6e-35 gi|113952525|gb|ABI48955.1| GDP-D-mannose pyrophosphorylase [Vio 144 1e-34 gi|113715733|gb|ABE03745.2| GDP-mannose pyrophosphorylase [Lycop 144 1e-34 gi|57340416|gb|AAT37498.2| GDP-mannose pyrophosphorylase [Lycope 144 1e-34 gi|4103324|gb|AAD01737.1| GDP-mannose pyrophosphorylase [Solanum 144 1e-34 gi|49246467|gb|AAT58365.1| GMPase [Medicago sativa] 143 3e-34 gi|80973464|gb|ABB53473.1| GDP-mannose pyrophosphorylase [Malpig 142 4e-34 gi|14971013|dbj|BAB62108.1| GDP-D-mannose pyrophosphorylase [Nic 142 5e-34 gi|15225553|ref|NP_181507.1| CYT1 (CYTOKINESIS DEFECTIVE 1); ... 142 7e-34 gi|13509287|emb|CAC35355.1| GDP-mannose pyrophosphorylase [Arabi 142 7e-34 gi|7269958|emb|CAB79775.1| GDP-mannose pyrophosphorylase like... 126 3e-29 gi|15233308|ref|NP_191118.1| nucleotidyltransferase [Arabidop... 125 7e-29 gi|15234771|ref|NP_194786.1| nucleotidyltransferase [Arabidop... 90.5 2e-18 gi|30699056|ref|NP_849887.1| nucleotidyltransferase [Arabidopsis 50.8 2e-06 gi|15222037|ref|NP_177629.1| nucleotidyltransferase [Arabidop... 50.8 2e-06 gi|4544432|gb|AAD22341.1| putative GDP-mannose pyrophosphorylas 50.1 4e-06 gi|22325477|ref|NP_178542.2| nucleotidyltransferase [Arabidopsis 50.1 4e-06 gi|108706777|gb|ABF94572.1| ADP-glucose pyrophosphorylase fam... 49.7 5e-06 gi|108706778|gb|ABF94573.1| ADP-glucose pyrophosphorylase fam... 49.7 5e-06 gi|115451463|ref|NP_001049332.1| Os03g0208900 [Oryza sativa (... 49.7 5e-06 gi|17064890|gb|AAL32599.1| putative GDP-mannose pyrophosphory... 49.7 5e-06 gi|5882732|gb|AAD55285.1|AC008263_16 Similar to gb|AF135422 G... 49.7 5e-06 gi|94962375|gb|ABF48494.1| putative GDP-mannose pyrophosphorylas 49.3 6e-06 gi|56475232|gb|AAV91897.1| ADP-glucose pyrophosphorylase [Gossyp 48.5 1e-05 gi|56475230|gb|AAV91896.1| ADP-glucose pyrophosphorylase [Gossyp 48.5 1e-05 gi|116059153|emb|CAL54860.1| Translation initiation factor 2B... 45.4 9e-05 gi|92870633|gb|ABE79911.1| Nucleotidyl transferase; Trimeric ... 45.4 9e-05 gi|15226869|ref|NP_181042.1| nucleotidyltransferase/ translat... 42.0 0.001 gi|15232869|ref|NP_186876.1| translation initiation factor [A... 41.6 0.001 gi|26006499|gb|AAN77308.1| Putative GDP-mannose pyrophosphory... 41.2 0.002 gi|15236830|ref|NP_193564.1| translation initiation factor [A... 40.4 0.003 gi|115449487|ref|NP_001048478.1| Os02g0812400 [Oryza sativa (... 39.7 0.005 gi|79328173|ref|NP_001031908.1| nucleotidyltransferase [Arabi... 35.4 0.093 gi|115467924|ref|NP_001057561.1| Os06g0338900 [Oryza sativa (... 34.3 0.21 gi|2911366|gb|AAC04337.1| NADPH HC toxin reductase [Zea mays] 33.5 0.35 gi|1707932|sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyl... 32.7 0.60 gi|116056315|emb|CAL56698.1| GDP-mannose pyrophosphorylase/ma... 32.3 0.79 gi|46360136|gb|AAS88891.1| AGPLU2 [Ostreococcus tauri] 32.3 0.79 gi|116058765|emb|CAL54472.1| Predicted haloacid-halidohydrola... 31.6 1.3 gi|13487783|gb|AAK27718.1|AF356002_1 ADP-glucose pyrophosphoryla 31.6 1.3 gi|92867566|gb|ABE77800.1| glucose-1-phosphate adenylyltransf... 31.2 1.8 gi|15232453|ref|NP_188116.1| DNA binding / N-acetyltransferas... 31.2 1.8 gi|8777481|dbj|BAA97061.1| unnamed protein product [Arabidopsis 31.2 1.8 gi|14582766|gb|AAK69627.1|AF334959_1 ADP-glucose pyrophosphor... 30.8 2.3 gi|23664291|gb|AAN39297.1| Brittle 2 [Zea mays] 30.8 2.3 gi|23664295|gb|AAN39299.1| Brittle 2 [Zea mays] >gi|23664297|... 30.8 2.3 gi|23664293|gb|AAN39298.1| Brittle 2 [Zea mays] >gi|23664303|... 30.8 2.3 gi|23664343|gb|AAN39323.1| Brittle 2 [Zea mays] >gi|23664345|... 30.8 2.3 gi|23664349|gb|AAN39326.1| Brittle 2 [Zea mays] 30.8 2.3 gi|115471355|ref|NP_001059276.1| Os07g0243200 [Oryza sativa (... 30.0 3.9 gi|22347636|gb|AAM95945.1| ADP-glucose pyrophosphorylase larg... 30.0 3.9 gi|22831238|dbj|BAC16096.1| putative glucose-1-phosphate aden... 30.0 3.9 gi|115458656|ref|NP_001052928.1| Os04g0449100 [Oryza sativa (... 29.6 5.1 gi|115455167|ref|NP_001051184.1| Os03g0735000 [Oryza sativa (... 29.6 5.1 gi|1840116|gb|AAC49943.1| ADP-glucose pyrophosphorylase large... 29.6 5.1 gi|2105137|gb|AAC49729.1| ADP-glucose pyrophosphorylase large su 29.6 5.1 gi|8515114|gb|AAF75832.1|AF193431_1 ADP-glucose pyrophosphory... 29.6 5.1 gi|38344837|emb|CAD40865.2| OSJNBa0064H22.18 [Oryza sativa (j... 29.6 5.1 gi|116056133|emb|CAL58314.1| unnamed protein product [Ostreococc 29.3 6.7 gi|3805960|emb|CAA74103.1| laccase [Populus trichocarpa] 29.3 6.7 gi|11071904|emb|CAC14719.1| laccase [Populus trichocarpa] 29.3 6.7 gi|13487711|gb|AAK27685.1|AF347698_1 ADP-glucose pyrophosphor... 29.3 6.7 gi|1575754|gb|AAB09585.1| ADP glucose pyrophosphorylase small... 29.3 6.7 gi|15239684|ref|NP_197423.1| ADG2 (ADPG PYROPHOSPHORYLASE 2);... 29.3 6.7 gi|15238933|ref|NP_199641.1| ADG1 (ADP GLUCOSE PYROPHOSPHORYL... 29.3 6.7 gi|4586350|dbj|BAA76362.1| glucose-1-phosphate adenylyltransfera 29.3 6.7 gi|110741678|dbj|BAE98785.1| hypothetical protein [Arabidopsis t 28.9 8.7 gi|13487785|gb|AAK27719.1|AF356003_1 ADP-glucose pyrophosphor... 28.9 8.7 gi|1707922|sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyl... 28.9 8.7
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 369 Number of extensions: 8 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 474 Length of database: 101054579 Length adjustment: 104 Effective length of query: 370 Effective length of database: 71586283 Effective search space: 3865659282 Effective search space used: 3865659282 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)