Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168928174-8339-110849496062.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig10 Length=492
Related Structures Score E Sequences producing significant alignments: (Bits) Value gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (... 305 5e-83 gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (... 305 5e-83 gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein 302 3e-82 gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa (... 302 5e-82 gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-b... 302 5e-82 gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-b... 302 5e-82 gi|115820|sp|P15194|CB2B_PINSY Chlorophyll a-b binding protei... 302 5e-82 gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesem 301 6e-82 gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-b... 301 6e-82 gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein 301 8e-82 gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein; LHCPII 301 1e-81 gi|115808|sp|P04783|CB25_PETSP Chlorophyll a-b binding protei... 301 1e-81 gi|115768|sp|P08221|CB21_CUCSA Chlorophyll a-b binding protei... 301 1e-81 gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-b... 301 1e-81 gi|115812|sp|P27491|CB27_TOBAC Chlorophyll a-b binding protei... 301 1e-81 gi|115792|sp|P27493|CB22_TOBAC Chlorophyll a-b binding protei... 301 1e-81 gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-b... 301 1e-81 gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-b... 301 1e-81 gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesem 300 1e-81 gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus 300 1e-81 gi|115805|sp|P27495|CB24_TOBAC Chlorophyll a-b binding protei... 300 1e-81 gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-b... 300 1e-81 gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pin 300 1e-81 gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-b... 300 1e-81 gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-li 300 2e-81 gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein 300 2e-81 gi|115825|sp|P07369|CB2G_LYCES Chlorophyll a-b binding protei... 300 2e-81 gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-b... 300 2e-81 gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a... 300 2e-81 gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-b... 300 2e-81 gi|115781|sp|P27492|CB21_TOBAC Chlorophyll a-b binding protei... 299 3e-81 gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-b... 299 4e-81 gi|115771|sp|P12329|CB21_MAIZE Chlorophyll a-b binding protei... 299 4e-81 gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-b... 299 4e-81 gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaran 298 5e-81 gi|115784|sp|P08222|CB22_CUCSA Chlorophyll a-b binding protei... 298 5e-81 gi|115804|sp|P04782|CB24_PETSP Chlorophyll a-b binding protei... 298 5e-81 gi|115819|sp|P07370|CB2B_LYCES Chlorophyll a-b binding protei... 298 5e-81 gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesem 298 7e-81 gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach ... 298 7e-81 gi|115798|sp|P04781|CB23_PETSP Chlorophyll a-b binding protei... 298 7e-81 gi|115780|sp|P12333|CB2A_SPIOL Chlorophyll a-b binding protei... 298 7e-81 gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCA... 298 9e-81 gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa (... 298 9e-81 gi|115817|sp|P15193|CB2A_PINSY Chlorophyll a-b binding protei... 298 9e-81 gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B bindin... 297 1e-80 gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-b 297 1e-80 gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C 297 1e-80 gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein 297 1e-80 gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein 297 1e-80 gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein 297 1e-80 gi|115810|sp|P27496|CB25_TOBAC Chlorophyll a-b binding protei... 297 1e-80 gi|115815|sp|P27497|CB29_MAIZE Chlorophyll a-b binding protei... 297 1e-80 gi|224927|prf||1204205B protein 1B,chlorophyll binding 297 1e-80 gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagu 297 1e-80 gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b 297 1e-80 gi|227139|prf||1615137B chlorophyll a/b binding protein P27 297 1e-80 gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b bi... 297 1e-80 gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protei 296 2e-80 gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding prot 296 2e-80 gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein 296 2e-80 gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa (... 296 2e-80 gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cice 296 2e-80 gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein,... 296 2e-80 gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medic 296 2e-80 gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b bin... 296 2e-80 gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding prot 296 2e-80 gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-bindin 296 3e-80 gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-b... 296 3e-80 gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata] 295 4e-80 gi|115807|sp|P12470|CB25_NICPL Chlorophyll a-b binding protei... 295 4e-80 gi|115818|sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protei... 295 4e-80 gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b bindin... 295 6e-80 gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Li... 295 6e-80 gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (... 295 6e-80 gi|115788|sp|P07371|CB22_PEA Chlorophyll a-b binding protein ... 295 6e-80 gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trif 295 7e-80 gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b 295 7e-80 gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding pr... 295 7e-80 gi|115800|sp|P09756|CB23_SOYBN Chlorophyll a-b binding protei... 295 7e-80 gi|115795|sp|P12469|CB23_NICPL Chlorophyll a-b binding protei... 295 7e-80 gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll... 294 9e-80 gi|115814|sp|P27490|CB28_PEA Chlorophyll a-b binding protein ... 294 1e-79 gi|115774|sp|P04779|CB21_PETSP Chlorophyll a-b binding protei... 294 1e-79 gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-bi... 294 1e-79 gi|115786|sp|P06671|CB22_MAIZE Chlorophyll a-b binding protei... 294 1e-79 gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza 293 2e-79 gi|115785|sp|P08963|CB22_HORVU Chlorophyll a-b binding protei... 293 2e-79 gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b bindi 293 3e-79 gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b b... 292 4e-79 gi|92890755|gb|ABE90474.1| Chlorophyll A-B binding protein [Medi 292 5e-79 gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (... 292 5e-79 gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of ... 292 5e-79 gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex... 291 8e-79 gi|226263|prf||1503276A chlorophyll a/b binding protein 291 8e-79 gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS I... 291 1e-78 gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-... 290 1e-78 gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein 290 2e-78 gi|115779|sp|P12471|CB21_SOYBN Chlorophyll a-b binding protei... 290 2e-78 gi|115791|sp|P09755|CB22_SOYBN Chlorophyll a-b binding protei... 290 2e-78
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 342 Number of extensions: 4 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 492 Length of database: 101054579 Length adjustment: 104 Effective length of query: 388 Effective length of database: 71586283 Effective search space: 4295176980 Effective search space used: 4295176980 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 63 (28.9 bits)