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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168928132-4525-43943348533.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig8
Length=476

Distribution of 9 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|52076695|dbj|BAD45608.1|  putative RNA polymerase I transcr...  70.1    3e-12
gi|3132470|gb|AAC16259.1|  unknown protein [Arabidopsis thaliana]  35.8    0.071
gi|30686199|ref|NP_850236.1|  RNA polymerase I transcription f...  35.8    0.071 UniGene infoGene info
gi|116056851|emb|CAL53140.1|  unnamed protein product [Ostreococc  32.7    0.60 
gi|115451997|ref|NP_001049599.1|  Os03g0256500 [Oryza sativa (...  30.8    2.3   Gene info
gi|21554199|gb|AAM63278.1|  unknown [Arabidopsis thaliana]         28.9    8.7   UniGene info
gi|8778246|gb|AAF79255.1|AC023279_4  F12K21.9 [Arabidopsis thalia  28.9    8.7  
gi|82542049|gb|ABB82032.1|  TIR-NBS disease resistance-like prote  28.9    8.7  
gi|18399340|ref|NP_564448.1|  unknown protein [Arabidopsis thalia  28.9    8.7   UniGene infoGene info
Alignments

>gi|52076695|dbj|BAD45608.1|  putative RNA polymerase I transcription factor RRN3 [Oryza sativa 
(japonica cultivar-group)]
 gi|52077031|dbj|BAD46064.1|  putative RNA polymerase I transcription factor RRN3 [Oryza sativa 
(japonica cultivar-group)]
Length=622

 Score = 70.1 bits (170),  Expect = 3e-12
 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
 Frame = +2

Query  137  MGVELMSNNDMAIYEMEDGYLSDTEAFYSVIQVLDGVRMAPNLIAESDRDQYANLLXXVD  316
            MG EL   +DM + E +   +SD++AF  V  VL  VRM P  +   D+++Y +LL  VD
Sbjct  1    MGAELR-RDDMEVAEED---ISDSQAFRFVEHVLQSVRMDPFQVDLRDKEEYDSLLSIVD  56

Query  317  PGKRMGPDEEXXLVTALKALSGAVSXXXTVFHGSLLNNXXSXCVXXYGLD  466
              K+   D+E  LVT LKALS AVS    ++H +LLNN  +  +     D
Sbjct  57   SSKKRSYDDEALLVTTLKALSEAVSKIDIMYHHALLNNIFTMSIWYLNSD  106


>gi|3132470|gb|AAC16259.1|  unknown protein [Arabidopsis thaliana]
Length=602

 Score = 35.8 bits (81),  Expect = 0.071
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
 Frame = +2

Query  143  VELMSN-NDMAIYE--MEDGYLSDTEAFYSVIQVLDGVRMAPNLIAESDRDQYANLLXXV  313
            VELMS+ + +   E  +++  LSDT       Q++  VR A   +   D D Y+ ++  +
Sbjct  4    VELMSDPSSLCTVENYVDNVDLSDT-------QLVQTVRKALTSVKTGDSDLYSEMVGVM  56

Query  314  --DPGKRMGPDEEXXLVTALKALSGAVSXXXTVFHGSLLN  427
              D  +   PD    L T LKALSGAV+    + H  LL+
Sbjct  57   ARDIKEFKDPDVVAQLETVLKALSGAVACIDVLHHQKLLS  96


>gi|30686199|ref|NP_850236.1| UniGene infoGene info RNA polymerase I transcription factor [Arabidopsis thaliana]
 gi|20465617|gb|AAM20140.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|23296957|gb|AAN13210.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
Length=613

 Score = 35.8 bits (81),  Expect = 0.071
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
 Frame = +2

Query  143  VELMSN-NDMAIYE--MEDGYLSDTEAFYSVIQVLDGVRMAPNLIAESDRDQYANLLXXV  313
            VELMS+ + +   E  +++  LSDT       Q++  VR A   +   D D Y+ ++  +
Sbjct  4    VELMSDPSSLCTVENYVDNVDLSDT-------QLVQTVRKALTSVKTGDSDLYSEMVGVM  56

Query  314  --DPGKRMGPDEEXXLVTALKALSGAVSXXXTVFHGSLLN  427
              D  +   PD    L T LKALSGAV+    + H  LL+
Sbjct  57   ARDIKEFKDPDVVAQLETVLKALSGAVACIDVLHHQKLLS  96


>gi|116056851|emb|CAL53140.1|  unnamed protein product [Ostreococcus tauri]
Length=133

 Score = 32.7 bits (73),  Expect = 0.60
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
 Frame = -1

Query  272  RLSNLEPSEHHRGL------V*QSKTPRYR*GSRPPSHK*PCRCYSSIPPPYSL  129
            RL  L PS+ H  L        QS  PR     R PSH  P R +S IPPP S+
Sbjct  66   RLLELIPSQKHLSLHSQAREFVQSLVPR-----RDPSHPPPTRIHSQIPPPPSI  114


>gi|115451997|ref|NP_001049599.1| Gene info Os03g0256500 [Oryza sativa (japonica cultivar-group)]
 gi|108707252|gb|ABF95047.1| Gene info hypothetical protein LOC_Os03g15130 [Oryza sativa (japonica cultivar-group)]
 gi|113548070|dbj|BAF11513.1| Gene info Os03g0256500 [Oryza sativa (japonica cultivar-group)]
Length=102

 Score = 30.8 bits (68),  Expect = 2.3
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query  383  LLKVPSKLS-LAXXPHRDPFSCLDQXX*AGWHTDLCHFRLSNLEPSE  246
            LL +PS LS L   P   P+ CL     +GW +D+ H   S+L P+E
Sbjct  11   LLPLPSSLSFLFLLPPLAPWQCLSLPPVSGWRSDIGH--TSSLPPTE  55


>gi|21554199|gb|AAM63278.1| UniGene info unknown [Arabidopsis thaliana]
Length=208

 Score = 28.9 bits (63),  Expect = 8.7
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 0/43 (0%)
 Frame = +2

Query  113  SSECGGENMGVELMSNNDMAIYEMEDGYLSDTEAFYSVIQVLD  241
            + E  GE++ +  +SN D  +  ++D +   ++  YS  +VLD
Sbjct  12   AKELYGESLQISKLSNKDHGLENLDDPFYGSSDEDYSEARVLD  54


>gi|8778246|gb|AAF79255.1|AC023279_4  F12K21.9 [Arabidopsis thaliana]
Length=715

 Score = 28.9 bits (63),  Expect = 8.7
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 0/43 (0%)
 Frame = +2

Query  113  SSECGGENMGVELMSNNDMAIYEMEDGYLSDTEAFYSVIQVLD  241
            + E  GE++ +  +SN D  +  ++D +   ++  YS  +VLD
Sbjct  533  AKELYGESLQISKLSNKDHGLENLDDPFYGSSDEDYSEARVLD  575


>gi|82542049|gb|ABB82032.1|  TIR-NBS disease resistance-like protein [Populus trichocarpa]
Length=509

 Score = 28.9 bits (63),  Expect = 8.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query  26   IREATGSFIHPVAICLPRASQSSKKDWRNSSECGGENMGVELMSNNDMA  172
            +R+ TGSF  P      R  +   K+WR + E  G+  G  L   NDMA
Sbjct  117  VRKQTGSFAEPFDKHEERFEEKLVKEWRKALEEAGKLSGWNL---NDMA  162


>gi|18399340|ref|NP_564448.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
Length=208

 Score = 28.9 bits (63),  Expect = 8.7
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 0/43 (0%)
 Frame = +2

Query  113  SSECGGENMGVELMSNNDMAIYEMEDGYLSDTEAFYSVIQVLD  241
            + E  GE++ +  +SN D  +  ++D +   ++  YS  +VLD
Sbjct  12   AKELYGESLQISKLSNKDHGLENLDDPFYGSSDEDYSEARVLD  54







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 311
Number of extensions: 3
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 476
Length of database: 101054579
Length adjustment: 104
Effective length of query: 372
Effective length of database: 71586283
Effective search space: 3865659282
Effective search space used: 3865659282
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 63 (28.9 bits)