Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168938298-23049-98063980410.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig116 Length=531
Score E Sequences producing significant alignments: (Bits) Value gi|18397703|ref|NP_566290.1| transcription factor [Arabidopsi... 51.2 8e-13 gi|15239847|ref|NP_199741.1| transcription factor [Arabidopsi... 43.1 5e-10 gi|26453042|dbj|BAC43597.1| unknown protein [Arabidopsis thalian 41.6 5e-09 gi|7549639|gb|AAF63824.1| hypothetical protein [Arabidopsis thal 41.6 5e-09 gi|21536761|gb|AAM61093.1| unknown [Arabidopsis thaliana] 41.6 5e-09 gi|15228899|ref|NP_188312.1| transcription factor [Arabidopsi... 41.6 7e-09 gi|115456383|ref|NP_001051792.1| Os03g0831200 [Oryza sativa (... 40.4 2e-06 gi|15236131|ref|NP_194345.1| transcription factor [Arabidopsi... 37.4 4e-06 gi|57899525|dbj|BAD87039.1| zinc finger protein-like [Oryza s... 40.0 5e-06 gi|17473547|gb|AAL38250.1| unknown protein [Arabidopsis thaliana 37.4 3e-05 gi|15241967|ref|NP_200497.1| transcription factor [Arabidopsi... 37.4 3e-05 gi|115445073|ref|NP_001046316.1| Os02g0220400 [Oryza sativa (... 37.7 4e-05 gi|2191172|gb|AAB61058.1| contains similarity to GATA-type zi... 40.0 6e-05 gi|115468636|ref|NP_001057917.1| Os06g0571800 [Oryza sativa (... 37.7 6e-05 gi|116831525|gb|ABK28715.1| unknown [Arabidopsis thaliana] 40.0 6e-05 gi|21555304|gb|AAM63829.1| unknown [Arabidopsis thaliana] 40.0 6e-05 gi|15240409|ref|NP_198045.1| transcription factor [Arabidopsi... 40.0 6e-05 gi|115465631|ref|NP_001056415.1| Os05g0578900 [Oryza sativa (... 37.4 1e-04 gi|115462183|ref|NP_001054691.1| Os05g0155400 [Oryza sativa (... 38.9 4e-04 gi|8778844|gb|AAF79843.1|AC026875_23 T6D22.9 [Arabidopsis thalia 35.8 4e-04 gi|15223086|ref|NP_172279.1| transcription factor [Arabidopsi... 35.8 5e-04 gi|15234463|ref|NP_195380.1| transcription factor [Arabidopsi... 37.4 5e-04 gi|42766602|gb|AAS45431.1| At4g36620 [Arabidopsis thaliana] 37.4 5e-04 gi|33772197|gb|AAQ54534.1| putative GATA-type zinc finger protei 33.5 5e-04 gi|18409199|ref|NP_566939.1| MNP (MONOPOLE); transcription fa... 37.4 6e-04 gi|4835238|emb|CAB42916.1| transcription factor-like protein [Ar 37.4 6e-04 gi|21555178|gb|AAM63797.1| transcription factor-like protein [Ar 37.4 6e-04 gi|20521225|dbj|BAB91742.1| GATA-type zinc finger transcripti... 37.4 6e-04 gi|15224164|ref|NP_179429.1| transcription factor [Arabidopsi... 37.4 6e-04 gi|15229571|ref|NP_189047.1| transcription factor [Arabidopsi... 37.7 0.002 gi|21593190|gb|AAM65139.1| GATA transcription factor 1 (AtGATA-1 37.7 0.002 gi|110743205|dbj|BAE99493.1| GATA transcription factor 1 [Arabid 37.7 0.002 gi|115436402|ref|NP_001042959.1| Os01g0343300 [Oryza sativa (... 36.6 0.002 gi|37572451|dbj|BAC98495.1| AG-motif binding protein-5 [Nicotian 35.8 0.003 gi|12711287|emb|CAC28528.1| GATA-1 zinc finger protein [Nicotian 35.0 0.003 gi|37572443|dbj|BAC98491.1| AG-motif binding protein-1 [Nicotian 35.8 0.006 gi|37572445|dbj|BAC98492.1| AG-motif binding protein-2 [Nicotian 35.8 0.008 gi|92888957|gb|ABE89629.1| Zinc finger, GATA-type [Medicago trun 35.4 0.008 gi|20466648|gb|AAM20641.1| GATA transcription factor 3 [Arabi... 35.4 0.008 gi|15236172|ref|NP_195194.1| transcription factor [Arabidopsi... 35.4 0.008 gi|22328703|ref|NP_680707.1| unknown protein [Arabidopsis thalia 39.3 0.008 gi|15239503|ref|NP_197955.1| transcription factor [Arabidopsi... 35.0 0.010 gi|34394273|dbj|BAC84753.1| hypothetical protein [Oryza sativ... 37.0 0.010 gi|115489662|ref|NP_001067318.1| Os12g0624900 [Oryza sativa (... 35.0 0.013 gi|115464943|ref|NP_001056071.1| Os05g0520300 [Oryza sativa (... 35.0 0.016 gi|15230631|ref|NP_190103.1| transcription factor [Arabidopsi... 28.5 0.022 gi|62734240|gb|AAX96349.1| GATA zinc finger, putative [Oryza ... 32.0 0.027 gi|15233971|ref|NP_195015.1| transcription factor [Arabidopsi... 35.0 0.028 gi|109676364|gb|ABG37664.1| unknown [Populus trichocarpa] 37.4 0.032 gi|92868351|gb|ABE78372.1| Zinc finger, GATA-type [Medicago trun 35.0 0.036 gi|15230393|ref|NP_190677.1| transcription factor [Arabidopsi... 32.7 0.036 gi|115439895|ref|NP_001044227.1| Os01g0745700 [Oryza sativa (... 35.0 0.045 gi|15232346|ref|NP_188711.1| transcription factor [Arabidopsi... 36.6 0.055 gi|15239343|ref|NP_201433.1| transcription factor [Arabidopsi... 32.7 0.059 gi|115469824|ref|NP_001058511.1| Os06g0704700 [Oryza sativa (... 36.2 0.071 gi|115459674|ref|NP_001053437.1| Os04g0539500 [Oryza sativa (... 32.7 0.075 gi|115447585|ref|NP_001047572.1| Os02g0645600 [Oryza sativa (... 32.7 0.075 gi|116310378|emb|CAH67389.1| H0115B09.1 [Oryza sativa (indica cu 32.7 0.075 gi|15451574|gb|AAK98698.1|AC069158_10 Putative GATA-1 zinc finge 35.8 0.093 gi|37572449|dbj|BAC98494.1| AG-motif binding protein-4 [Nicotian 35.8 0.093 gi|15223085|ref|NP_172278.1| transcription factor [Arabidopsi... 35.8 0.093 gi|78499690|gb|ABB45844.1| hypothetical protein [Thellungiella h 32.7 0.13 gi|92892679|gb|ABE91358.1| Zinc finger, GATA-type [Medicago trun 35.0 0.16 gi|115483376|ref|NP_001065358.1| Os10g0557600 [Oryza sativa (... 35.0 0.16 gi|37572447|dbj|BAC98493.1| AG-motif binding protein-3 [Nicotian 35.0 0.16 gi|1076609|pir||S46419 NTL1 protein - curled-leaved tobacco 35.0 0.16 gi|15232355|ref|NP_191612.1| transcription factor [Arabidopsi... 35.0 0.16 gi|15225399|ref|NP_182031.1| transcription factor [Arabidopsi... 35.0 0.16 gi|115487540|ref|NP_001066257.1| Os12g0168800 [Oryza sativa (... 29.3 0.21 gi|116058890|emb|CAL54597.1| GATA-4/5/6 transcription factors (I 31.2 0.21 gi|20503007|gb|AAM22716.1|AC098693_21 Hypothetical protein [O... 32.7 0.21 gi|15234336|ref|NP_195347.1| transcription factor [Arabidopsi... 31.6 0.21 gi|15233101|ref|NP_191041.1| transcription factor [Arabidopsi... 34.3 0.27 gi|38344977|emb|CAE02783.2| OSJNBa0011L07.7 [Oryza sativa (japon 32.7 0.79 gi|115450693|ref|NP_001048947.1| Os03g0145200 [Oryza sativa (... 32.7 0.79 gi|115455165|ref|NP_001051183.1| Os03g0734900 [Oryza sativa (... 32.3 1.0 gi|108710935|gb|ABF98730.1| CCT motif family protein, express... 32.3 1.0 gi|50582726|gb|AAT78796.1| putative zinc finger protein [Oryz... 32.3 1.0 gi|8096269|dbj|BAA95789.1| KED [Nicotiana tabacum] 32.3 1.0 gi|15226388|ref|NP_180401.1| transcription factor [Arabidopsi... 31.6 1.8 gi|108710446|gb|ABF98241.1| GATA transcription factor 27, put... 31.2 2.3 gi|15028099|gb|AAK76580.1| putative flowering protein CONSTANS [ 31.2 2.3 gi|115454631|ref|NP_001050916.1| Os03g0684000 [Oryza sativa (... 31.2 2.3 gi|77551698|gb|ABA94495.1| Leucine Rich Repeat family protein... 31.2 2.3 gi|22329242|ref|NP_195571.2| BGAL14; beta-galactosidase/ suga... 31.2 2.3 gi|115474117|ref|NP_001060657.1| Os07g0682000 [Oryza sativa (... 31.2 2.3 gi|6686900|emb|CAB64750.1| putative beta-galactosidase [Arabidop 31.2 2.3 gi|4467146|emb|CAB37515.1| galactosidase like protein [Arabid... 31.2 2.3 gi|18403600|ref|NP_564593.1| ZML2 (ZIM-LIKE 2); transcription... 31.2 2.3 gi|14140288|gb|AAK54294.1|AC034258_12 putative transcription ... 25.4 2.5 gi|22213209|gb|AAM94549.1| putative zinc finger protein, 3'-p... 25.4 2.6 gi|15450790|gb|AAK96666.1| ATP-dependent RNA helicase [Arabidops 30.8 3.0 gi|16648923|gb|AAL24313.1| Unknown protein [Arabidopsis thaliana 30.8 3.0 gi|79404523|ref|NP_188307.3| ATP binding / ATP-dependent heli... 30.8 3.0 gi|15223583|ref|NP_176058.1| unknown protein [Arabidopsis tha... 30.8 3.0 gi|108861884|sp|Q93Y39|RH13_ARATH DEAD-box ATP-dependent RNA ... 30.8 3.0 gi|77553125|gb|ABA95921.1| GATA zinc finger family protein, e... 30.4 3.9 gi|115465501|ref|NP_001056350.1| Os05g0567400 [Oryza sativa (... 30.0 5.1 gi|115441599|ref|NP_001045079.1| Os01g0896300 [Oryza sativa (... 30.0 5.1 gi|21952852|dbj|BAC06267.1| P0696G06.24 [Oryza sativa (japonica 30.0 5.1
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 234 Number of extensions: 2 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 531 Length of database: 101054579 Length adjustment: 106 Effective length of query: 425 Effective length of database: 71019585 Effective search space: 5042390535 Effective search space used: 5042390535 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)