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BLASTX 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168929035-8885-13051984120.BLASTQ4


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig12
Length=400


Distribution of 7 Blast Hits on the Query Sequence



                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|55418544|gb|AAV51392.1|  INDETERMINATE-related protein 9 [Zea   38.1    0.009 UniGene infoGene info
gi|19698935|gb|AAL91203.1|  putative C2H2-type zinc finger protei  36.6    0.027 UniGene info
gi|15226866|ref|NP_178316.1|  nucleic acid binding / transcrip...  36.6    0.027 UniGene infoGene info
gi|115447847|ref|NP_001047703.1|  Os02g0672100 [Oryza sativa (...  31.6    0.86  Gene info
gi|15228743|ref|NP_191798.1|  unknown protein [Arabidopsis tha...  29.6    3.3   UniGene infoGene info
gi|15229024|ref|NP_190448.1|  serine C-palmitoyltransferase/ t...  28.5    7.3   UniGene infoGene info
gi|11279408|pir||T49275  serine C-palmitoyltransferase (EC 2.3...  28.5    7.3  
Alignments
>gi|55418544|gb|AAV51392.1| UniGene infoGene info INDETERMINATE-related protein 9 [Zea mays] Length=588 Score = 38.1 bits (87), Expect = 0.009 Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 12/102 (11%) Frame = +1 Query 31 PQQGLLGNKSFQGLMQFPDIQNNTSNSPsaanlfnlsflsnssntssinnnnsantdnnl 210 P L GNK F GLMQ PD+Q N + P S S + + NN NS+ + + Sbjct 328 PHSFLQGNKPFHGLMQLPDLQGNGAGGP------GGSGPSLFNLSFFANNGNSSGSSHEH 381 Query 211 sssGLL-ISDHFN-NENGAGGTSEAS--NLFSNNIM--GDQI 318 +S GL+ +DHFN G GG SEAS +F N + GDQ+ Sbjct 382 ASQGLMNNNDHFNGGAGGGGGGSEASEAGIFGGNFVGGGDQV 423 >gi|19698935|gb|AAL91203.1| UniGene info putative C2H2-type zinc finger protein [Arabidopsis thaliana] Length=602 Score = 36.6 bits (83), Expect = 0.027 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 4/43 (9%) Frame = +1 Query 223 LLISDHFNNENGAGGTSEAS-NLFSNNIM--GDQITS-NIPSL 339 L+IS+H++ EN GG E S LF NN+M D+I+S ++PSL Sbjct 379 LMISNHYDGENAVGGGGEGSTGLFPNNLMSSADRISSGSVPSL 421 >gi|15226866|ref|NP_178316.1| UniGene infoGene info nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] gi|4038043|gb|AAC97225.1| Gene info putative C2H2-type zinc finger protein [Arabidopsis thaliana] gi|15810271|gb|AAL07023.1| UniGene infoGene info putative C2H2-type zinc finger protein [Arabidopsis thaliana] gi|24899775|gb|AAN65102.1| UniGene infoGene info putative C2H2-type zinc finger protein [Arabidopsis thaliana] gi|41059987|emb|CAF18564.1| UniGene infoGene info ID1-like zinc finger protein 2 [Arabidopsis thaliana] Length=602 Score = 36.6 bits (83), Expect = 0.027 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 4/43 (9%) Frame = +1 Query 223 LLISDHFNNENGAGGTSEAS-NLFSNNIM--GDQITS-NIPSL 339 L+IS+H++ EN GG E S LF NN+M D+I+S ++PSL Sbjct 379 LMISNHYDGENAVGGGGEGSTGLFPNNLMSSADRISSGSVPSL 421 >gi|115447847|ref|NP_001047703.1| Gene info Os02g0672100 [Oryza sativa (japonica cultivar-group)] gi|50251918|dbj|BAD27855.1| Gene info finger protein pcp1-like [Oryza sativa (japonica cultivar-group)] gi|113537234|dbj|BAF09617.1| Gene info Os02g0672100 [Oryza sativa (japonica cultivar-group)] Length=615 Score = 31.6 bits (70), Expect = 0.86 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 0/25 (0%) Frame = +1 Query 40 GLLGNKSFQGLMQFPDIQNNTSNSP 114 G L K F GLMQ PD+Q N + P Sbjct 339 GFLQGKPFHGLMQLPDLQGNGTGGP 363 >gi|15228743|ref|NP_191798.1| UniGene infoGene info unknown protein [Arabidopsis thaliana] gi|7340710|emb|CAB82953.1| Gene info putative protein [Arabidopsis thaliana] gi|21537280|gb|AAM61621.1| UniGene infoGene info unknown [Arabidopsis thaliana] gi|110737983|dbj|BAF00927.1| Gene info hypothetical protein [Arabidopsis thaliana] Length=475 Score = 29.6 bits (65), Expect = 3.3 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +1 Query 223 LLISDHFNNENGAGGTSEASNLFSNNIMGDQITSNIPSLLQLIRFK 360 +LIS HFN+ G+S+ S +F I G+ + + + L K Sbjct 73 ILISTHFNSPENTSGSSKIS-VFEQKISGESLVKEVREIANLTSIK 117 >gi|15229024|ref|NP_190448.1| UniGene infoGene info serine C-palmitoyltransferase/ transferase, transferring nitrogenous groups [Arabidopsis thaliana] Length=350 Score = 28.5 bits (62), Expect = 7.3 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = +1 Query 220 GLLISDHFNNE---NGAGGTSEASNLFSNNIMGDQITSNIP 333 GL+ISD N+ NGA G+ +F +NI+ + I P Sbjct 50 GLIISDSLNHTSIINGARGSGATIRVFQHNILKEHIIEGQP 90 >gi|11279408|pir||T49275 serine C-palmitoyltransferase (EC 2.3.1.50) [similarity] - Arabidopsis thaliana (fragment) gi|7576217|emb|CAB87907.1| serine palmitoyltransferase-like protein [Arabidopsis thaliana] Length=386 Score = 28.5 bits (62), Expect = 7.3 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = +1 Query 220 GLLISDHFNNE---NGAGGTSEASNLFSNNIMGDQITSNIP 333 GL+ISD N+ NGA G+ +F +NI+ + I P Sbjct 86 GLIISDSLNHTSIINGARGSGATIRVFQHNILKEHIIEGQP 126
  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.314    0.132    0.406 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 245
Number of extensions: 1
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 400
Length of database: 101054579
Length adjustment: 99
Effective length of query: 301
Effective length of database: 73003028
Effective search space: 2482102952
Effective search space used: 2482102952
T: 12
A: 40
X1: 16 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)