RID=1168938349-21086-129046912393.BLASTQ1, Contig120

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168938349-21086-129046912393.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig120
Length=531

Distribution of 13 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|15222972|ref|NP_172840.1|  DRL1 (DEFORMED ROOTS AND LEAVES ...   153    3e-51 
gi|23504265|emb|CAD21832.1|  DRL1 protein [Arabidopsis thaliana]    153    3e-51
gi|116059886|emb|CAL55593.1|  RNA polymerase II elongator asso...  78.2    2e-17
gi|92867830|gb|ABE77964.1|  Glycoside hydrolase, family 17 [Medic  33.1    0.60 
gi|3643192|gb|AAD11574.1|  unknown [Arabidopsis thaliana]          32.3    1.0   
gi|30697974|ref|NP_851262.1|  caspase [Arabidopsis thaliana]       32.3    1.0   
gi|15237654|ref|NP_201229.1|  caspase [Arabidopsis thaliana] >...  32.3    1.0   
gi|92881775|gb|ABE86391.1|  Zinc finger, PMZ-type; FBD [Medicago   29.6    6.7  
gi|2826771|emb|CAA67118.1|  ACC synthase [Nicotiana tabacum]       29.3    8.7   
gi|13873334|dbj|BAB44155.1|  hydroxypyruvate reductase [Bruguiera  29.3    8.7

Alignments

 

>gi|15222972|ref|NP_172840.1|  DRL1 (DEFORMED ROOTS AND LEAVES 1) [Arabidopsis thaliana]
 gi|8778407|gb|AAF79415.1|AC068197_25  F16A14.8 [Arabidopsis thaliana]
 gi|28393388|gb|AAO42118.1|  unknown protein [Arabidopsis thaliana]
 gi|28827568|gb|AAO50628.1|  unknown protein [Arabidopsis thaliana]
Length=302

 Score =  153 bits (386),  Expect(2) = 3e-51
 Identities = 76/95 (80%), Positives = 82/95 (86%), Gaps = 0/95 (0%)
 Frame = +3

Query  117  MA*VVICGQPCSGKSSAAKCLSEALNESECKQTVRIIDETLFHLDRNQSYANMPAEKNLR  296
            MA VVICGQPCSGKS AA  L+E L ESE KQ+VRIIDE  FHLDRNQ+YANMPAEKNLR
Sbjct  1    MALVVICGQPCSGKSIAAVTLAETLKESETKQSVRIIDEASFHLDRNQNYANMPAEKNLR  60

Query  297  GVLRSEVDRSVSRDNIIIVDSLNSIKGYRYELWCL  401
            G LRS+VDRSVS   I+IVDSLNSIKGYRYELWC+
Sbjct  61   GKLRSDVDRSVSTGEIVIVDSLNSIKGYRYELWCI  95


 Score = 68.6 bits (166),  Expect(2) = 3e-51
 Identities = 27/40 (67%), Positives = 35/40 (87%), Gaps = 0/40 (0%)
 Frame = +2

Query  401  ARAAGIRYCVLYCDVEEAQCRKWNEKRKEKGEAAYNDAIF  520
            ARAAGIRYCV+YCDV+EA CR+WN++R ++GE  Y+D IF
Sbjct  96   ARAAGIRYCVVYCDVDEAHCRQWNKERSDRGEDGYDDGIF  135


>gi|23504265|emb|CAD21832.1|  DRL1 protein [Arabidopsis thaliana]
Length=302

 Score =  153 bits (386),  Expect(2) = 3e-51
 Identities = 76/95 (80%), Positives = 82/95 (86%), Gaps = 0/95 (0%)
 Frame = +3

Query  117  MA*VVICGQPCSGKSSAAKCLSEALNESECKQTVRIIDETLFHLDRNQSYANMPAEKNLR  296
            MA VVICGQPCSGKS AA  L+E L ESE KQ+VRIIDE  FHLDRNQ+YANMPAEKNLR
Sbjct  1    MALVVICGQPCSGKSIAAVTLAETLKESETKQSVRIIDEASFHLDRNQNYANMPAEKNLR  60

Query  297  GVLRSEVDRSVSRDNIIIVDSLNSIKGYRYELWCL  401
            G LRS+VDRSVS   I+IVDSLNSIKGYRYELWC+
Sbjct  61   GKLRSDVDRSVSTGEIVIVDSLNSIKGYRYELWCI  95


 Score = 68.6 bits (166),  Expect(2) = 3e-51
 Identities = 27/40 (67%), Positives = 35/40 (87%), Gaps = 0/40 (0%)
 Frame = +2

Query  401  ARAAGIRYCVLYCDVEEAQCRKWNEKRKEKGEAAYNDAIF  520
            ARAAGIRYCV+YCDV+EA CR+WN++R ++GE  Y+D IF
Sbjct  96   ARAAGIRYCVVYCDVDEAHCRQWNKERSDRGEDGYDDGIF  135


>gi|116059886|emb|CAL55593.1|  RNA polymerase II elongator associated protein (ISS) [Ostreococcus 
tauri]
Length=304

 Score = 78.2 bits (191),  Expect(2) = 2e-17
 Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
 Frame = +3

Query  126  VVICGQPCSGKSSAAKCLSEALNESECKQTVRIIDETLFHL-DRNQSYANMPAEKNLRGV  302
            +V+CG+P SGK+   + L+E L E E +  V + DE   +   R+++Y N   EK +RG 
Sbjct  6    IVMCGKPSSGKTKTVRELAERL-EREVETEVVVADEAGVNARTRDEAYENATTEKMIRGA  64

Query  303  LRSEVDRSVSRDN-IIIVDSLNSIKGYRYELWC  398
            LRSEVDR +      +I+DS+N+IKG+RYELWC
Sbjct  65   LRSEVDRVLHTSGPCVILDSMNAIKGFRYELWC  97


 Score = 30.4 bits (67),  Expect(2) = 2e-17
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
 Frame = +2

Query  401  ARAAGIRYCVLYCDVEEAQCRKWNEKRKE  487
            ARA   RYCV+Y +  + +C + N  R++
Sbjct  99   ARAVAARYCVVYVESSDERCTELNRARRD  127


>gi|92867830|gb|ABE77964.1|  Glycoside hydrolase, family 17 [Medicago truncatula]
Length=470

 Score = 33.1 bits (74),  Expect = 0.60
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
 Frame = +3

Query  186  ALNESECKQTVRIIDETLFHLDRNQSYANMPAEKNLRGVLRSEVDRSVSRDNIIIVDSLN  365
            AL+ S+ K TV + ++ LF   ++QS+A    E+N+     + +  +++  N + VD  N
Sbjct  66   ALSGSKIKLTVDLPNQQLFAAAKSQSFALSWVERNIVAYQPNTIIEAIAVGNEVFVDPNN  125

Query  366  SIKGYRYELWCLPVLQE*GTVCYIVMLKKHSVGNGMK  476
            S K      + +P ++          L+KH++ N +K
Sbjct  126  STK------YLVPAMKN-----IYRSLQKHNLHNDIK  151


>gi|3643192|gb|AAD11574.1|  unknown [Arabidopsis thaliana]
Length=346

 Score = 32.3 bits (72),  Expect = 1.0
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +3

Query  129  VICGQPCSGKSSAAK-CLSEA--LNESECKQTVRIIDETLFHLDRNQSYANMPAEKNLRG  299
            V+CG    GKS + K C+S+A  +     +Q    ID  L   +   S   +P ++N+R 
Sbjct  93   VLCGVNYKGKSYSLKGCISDAKSMRSLLVQQMGFPIDSILMLTEDEASPQRIPTKRNIRK  152

Query  300  VLRSEVDRSVSRDNII  347
             +R  V+ + +RD+++
Sbjct  153  AMRWLVEGNRARDSLV  168


>gi|30697974|ref|NP_851262.1|  caspase [Arabidopsis thaliana]
Length=305

 Score = 32.3 bits (72),  Expect = 1.0
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +3

Query  129  VICGQPCSGKSSAAK-CLSEA--LNESECKQTVRIIDETLFHLDRNQSYANMPAEKNLRG  299
            V+CG    GKS + K C+S+A  +     +Q    ID  L   +   S   +P ++N+R 
Sbjct  93   VLCGVNYKGKSYSLKGCISDAKSMRSLLVQQMGFPIDSILMLTEDEASPQRIPTKRNIRK  152

Query  300  VLRSEVDRSVSRDNII  347
             +R  V+ + +RD+++
Sbjct  153  AMRWLVEGNRARDSLV  168


>gi|15237654|ref|NP_201229.1|  caspase [Arabidopsis thaliana]
 gi|9759400|dbj|BAB09855.1|  unnamed protein product [Arabidopsis thaliana]
 gi|21592565|gb|AAM64514.1|  latex-abundant protein, putative [Arabidopsis thaliana]
 gi|27311579|gb|AAO00755.1|  putative protein [Arabidopsis thaliana]
 gi|32482816|gb|AAP84708.1|  metacaspase 3 [Arabidopsis thaliana]
 gi|34098865|gb|AAQ56815.1|  At5g64240 [Arabidopsis thaliana]
Length=362

 Score = 32.3 bits (72),  Expect = 1.0
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +3

Query  129  VICGQPCSGKSSAAK-CLSEA--LNESECKQTVRIIDETLFHLDRNQSYANMPAEKNLRG  299
            V+CG    GKS + K C+S+A  +     +Q    ID  L   +   S   +P ++N+R 
Sbjct  93   VLCGVNYKGKSYSLKGCISDAKSMRSLLVQQMGFPIDSILMLTEDEASPQRIPTKRNIRK  152

Query  300  VLRSEVDRSVSRDNII  347
             +R  V+ + +RD+++
Sbjct  153  AMRWLVEGNRARDSLV  168


>gi|92881775|gb|ABE86391.1|  Zinc finger, PMZ-type; FBD [Medicago truncatula]
Length=225

 Score = 29.6 bits (65),  Expect = 6.7
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
 Frame = -2

Query  527  IFKIWHHYMQPLPSPYVFHSISYTVLLQHHNITHSTLFLQHGQTP*LVSITLDTVQRINY  348
            +FKI+H   QP   P +FH++++ VLL   +I    L       P L +  L+  Q+IN 
Sbjct  61   LFKIYH---QPCEFPTIFHNLTHLVLLYDWDIVVQVLH----HCPNLQN--LELYQKING  111

Query  347  NNIISGDRSINFRPEHSP  294
             N +  +  +  RP++ P
Sbjct  112  YNWLDQENWV--RPKNVP  127


>gi|2826771|emb|CAA67118.1|  ACC synthase [Nicotiana tabacum]
Length=483

 Score = 29.3 bits (64),  Expect = 8.7
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query  177  LSEALNESECKQTVRIIDETLFHLDRNQSYA----NMPAEKNLRGVLRSEVDRSVSRDNI  344
            L   L+    K TVR I+E   HL  ++ YA    N P   ++  V+  E D    RD I
Sbjct  212  LGTILDRETLKDTVRFINEKNIHLVCDEIYAATIFNKPDFISISEVIMEE-DVECDRDLI  270

Query  345  IIVDSLNSIKGY  380
             IV SL+   G+
Sbjct  271  HIVYSLSKDLGF  282


>gi|13873334|dbj|BAB44155.1|  hydroxypyruvate reductase [Bruguiera gymnorrhiza]
Length=386

 Score = 29.3 bits (64),  Expect = 8.7
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
 Frame = +3

Query  141  QPCSGKSSAAKCLSEALNESECKQTVRIIDETLFHLDRNQSYANMPAEKNLRGVLRSEVD  320
            QP + K +A   + E L E++      ++D+T +HL   +S A+M  E  L    R  V 
Sbjct  220  QPVTWKRAAT--MDEVLREADVISLHPVLDKTTYHLINKESLASMKKEAVLVNCSRGPV-  276

Query  321  RSVSRDNIIIVDSLNSIKGYRYEL  392
                 D + +V+ L     +R  L
Sbjct  277  ----IDEVALVEHLRRNPMFRVGL  296

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 368
Number of extensions: 5
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 531
Length of database: 101054579
Length adjustment: 106
Effective length of query: 425
Effective length of database: 71019585
Effective search space: 5042390535
Effective search space used: 5042390535
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 64 (29.3 bits)