RID=1168938538-611-173036285818.BLASTQ1, Contig122

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168938538-611-173036285818.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig122
Length=528

Distribution of 10 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|115447277|ref|NP_001047418.1|  Os02g0613200 [Oryza sativa (...  32.0    1.3   
gi|92896655|gb|ABE93295.1|  Leucine-rich repeat; Leucine-rich ...  31.2    2.3  
gi|75326883|sp|Q7PC85|PDR10_ARATH  Probable pleiotropic drug r...  30.4    3.9  
gi|22331443|ref|NP_683617.1|  ATP binding / ATPase/ nucleoside...  30.4    3.9   
gi|9294504|dbj|BAB02609.1|  ABC transporter-like protein [Arabido  30.4    3.9  
gi|53791469|dbj|BAD52521.1|  ABC1 protein-like [Oryza sativa (jap  29.3    8.6  
gi|53791468|dbj|BAD52520.1|  putative ABC1 protein [Oryza sativa   29.3    8.6  
gi|33304608|gb|AAQ02685.1|  PDR-type ABC transporter 9 [Oryza ...  29.3    8.6   
gi|11994119|dbj|BAB01121.1|  unnamed protein product [Arabidopsis  29.3    8.6  
gi|115438436|ref|NP_001043539.1|  Os01g0609300 [Oryza sativa (...  29.3    8.6

Alignments

 

>gi|115447277|ref|NP_001047418.1|  Os02g0613200 [Oryza sativa (japonica cultivar-group)]
 gi|47497632|dbj|BAD19701.1|  leucine-rich repeat-like protein [Oryza sativa (japonica cultivar-group)]
 gi|113536949|dbj|BAF09332.1|  Os02g0613200 [Oryza sativa (japonica cultivar-group)]
Length=582

 Score = 32.0 bits (71),  Expect = 1.3
 Identities = 14/17 (82%), Positives = 15/17 (88%), Gaps = 0/17 (0%)
 Frame = +3

Query  411  GLQKLSILNLEGCPVTA  461
            GL KL+ LNLEGCPVTA
Sbjct  281  GLSKLTQLNLEGCPVTA  297


>gi|92896655|gb|ABE93295.1|  Leucine-rich repeat; Leucine-rich repeat, ribonuclease inhibitor 
subtype; Leucine-rich repeat, cysteine-containing subtype 
[Medicago truncatula]
Length=576

 Score = 31.2 bits (69),  Expect = 2.3
 Identities = 13/17 (76%), Positives = 15/17 (88%), Gaps = 0/17 (0%)
 Frame = +3

Query  411  GLQKLSILNLEGCPVTA  461
            GLQKLS LN+EGC +TA
Sbjct  275  GLQKLSTLNVEGCSITA  291


>gi|75326883|sp|Q7PC85|PDR10_ARATH  Probable pleiotropic drug resistance protein 10
 gi|28144356|tpg|DAA00878.1|  TPA_exp: PDR10 ABC transporter [Arabidopsis thaliana]
Length=1418

 Score = 30.4 bits (67),  Expect = 3.9
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 0/36 (0%)
 Frame = +2

Query  221   WIVFSGFQKSPPWFSIRLSFYAFDCPKFWTITNLKV  328
             W VFSGF    P   + L ++ + CP +W +  L +
Sbjct  1322  WNVFSGFTIPRPRMHVWLRWFTYVCPGWWGLYGLTI  1357


>gi|22331443|ref|NP_683617.1|  ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding 
[Arabidopsis thaliana]
Length=1406

 Score = 30.4 bits (67),  Expect = 3.9
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 0/36 (0%)
 Frame = +2

Query  221   WIVFSGFQKSPPWFSIRLSFYAFDCPKFWTITNLKV  328
             W VFSGF    P   + L ++ + CP +W +  L +
Sbjct  1310  WNVFSGFTIPRPRMHVWLRWFTYVCPGWWGLYGLTI  1345


>gi|9294504|dbj|BAB02609.1|  ABC transporter-like protein [Arabidopsis thaliana]
Length=1405

 Score = 30.4 bits (67),  Expect = 3.9
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 0/36 (0%)
 Frame = +2

Query  221   WIVFSGFQKSPPWFSIRLSFYAFDCPKFWTITNLKV  328
             W VFSGF    P   + L ++ + CP +W +  L +
Sbjct  1329  WNVFSGFTIPRPRMHVWLRWFTYVCPGWWGLYGLTI  1364


>gi|53791469|dbj|BAD52521.1|  ABC1 protein-like [Oryza sativa (japonica cultivar-group)]
Length=423

 Score = 29.3 bits (64),  Expect = 8.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 0/36 (0%)
 Frame = +2

Query  221  WIVFSGFQKSPPWFSIRLSFYAFDCPKFWTITNLKV  328
            W +FSGF    P   I   +Y + CP  WT+  L V
Sbjct  327  WNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVV  362


>gi|53791468|dbj|BAD52520.1|  putative ABC1 protein [Oryza sativa (japonica cultivar-group)]
Length=1281

 Score = 29.3 bits (64),  Expect = 8.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 0/36 (0%)
 Frame = +2

Query  221   WIVFSGFQKSPPWFSIRLSFYAFDCPKFWTITNLKV  328
             W +FSGF    P   I   +Y + CP  WT+  L V
Sbjct  1185  WNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVV  1220


>gi|33304608|gb|AAQ02685.1|  PDR-type ABC transporter 9 [Oryza sativa (indica cultivar-group)]
Length=1457

 Score = 29.3 bits (64),  Expect = 8.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 0/36 (0%)
 Frame = +2

Query  221   WIVFSGFQKSPPWFSIRLSFYAFDCPKFWTITNLKV  328
             W +FSGF    P   I   +Y + CP  WT+  L V
Sbjct  1361  WNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVV  1396


>gi|11994119|dbj|BAB01121.1|  unnamed protein product [Arabidopsis thaliana]
Length=97

 Score = 29.3 bits (64),  Expect = 8.6
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -1

Query  372  LAAKIWVLIFGGFALTLRFVIVQNFGQSNA*KESRIENQGG  250
            LA K+W+ +FGG  L LRF + +N G +    ++R+   GG
Sbjct  24   LAGKLWIYVFGGKILGLRFWL-ENHGFTFLAGKTRVYVFGG  63


>gi|115438436|ref|NP_001043539.1|  Os01g0609300 [Oryza sativa (japonica cultivar-group)]
 gi|75328830|sp|Q8GU90|PDR3_ORYSA  Pleiotropic drug resistance protein 3
 gi|27368821|emb|CAD59568.1|  PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)]
 gi|28144343|tpg|DAA00886.1|  TPA_exp: PDR3 ABC transporter [Oryza sativa (japonica cultivar-group)]
 gi|113533070|dbj|BAF05453.1|  Os01g0609300 [Oryza sativa (japonica cultivar-group)]
Length=1457

 Score = 29.3 bits (64),  Expect = 8.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 0/36 (0%)
 Frame = +2

Query  221   WIVFSGFQKSPPWFSIRLSFYAFDCPKFWTITNLKV  328
             W +FSGF    P   I   +Y + CP  WT+  L V
Sbjct  1361  WNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVV  1396

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 437
Number of extensions: 10
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 528
Length of database: 101054579
Length adjustment: 106
Effective length of query: 422
Effective length of database: 71019585
Effective search space: 4971370950
Effective search space used: 4971370950
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 64 (29.3 bits)