Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168939358-10296-15880475215.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig139 Length=584
Score E Sequences producing significant alignments: (Bits) Value gi|15982787|gb|AAL09741.1| AT4g05320/C17L7_240 [Arabidopsis thal 320 2e-87 gi|312160|emb|CAA51679.1| ubiquitin [Solanum lycopersicum] 320 2e-87 gi|3126967|gb|AAC16012.1| polyubiquitin [Elaeagnus umbellata] 320 2e-87 gi|1332579|emb|CAA66667.1| polyubiquitin [Pinus sylvestris] 320 3e-87 gi|68160568|gb|AAY86773.1| polyubiquitin [Thlaspi caerulescens] 319 4e-87 gi|116312012|emb|CAJ86369.1| OSIGBa0117N13.13 [Oryza sativa (... 319 4e-87 gi|116060737|emb|CAL57215.1| Ubiquitin/60s ribosomal protein ... 319 4e-87 gi|115187323|gb|ABI84246.1| polyubiquitin 10 [Arachis hypogaea] 319 4e-87 gi|115460714|ref|NP_001053957.1| Os04g0628100 [Oryza sativa (... 319 4e-87 gi|61223100|gb|AAX40652.1| polyubiquitin [Oryza sativa (japonica 319 4e-87 gi|30523391|gb|AAP31578.1| ubiquitin [Hevea brasiliensis] 319 4e-87 gi|18824|emb|CAA40324.1| hexaubiquitin protein [Helianthus an... 319 4e-87 gi|16660462|gb|AAL27564.1|AF429430_1 polyubiquitin OUB2 [Olea eu 319 4e-87 gi|4115337|gb|AAD03343.1| ubiquitin [Pisum sativum] 319 4e-87 gi|28436481|gb|AAO43307.1| putative polyubiquitin [Arabidopsis t 319 4e-87 gi|16071|emb|CAA48140.1| ubiquitin [Antirrhinum majus] 319 4e-87 gi|30680052|ref|NP_849299.1| UBQ10 (POLYUBIQUITIN 10); protei... 319 4e-87 gi|18803|emb|CAA40323.1| polyubiquitin protein [Helianthus annuu 319 4e-87 gi|602076|emb|CAA54603.1| pentameric polyubiquitin [Nicotiana ta 319 4e-87 gi|23397122|gb|AAN31845.1| putative polyubiquitin (UBQ10) [Arabi 319 4e-87 gi|16660459|gb|AAL27563.1|AF429429_1 polyubiquitin OUB1 [Olea eu 319 4e-87 gi|902586|gb|AAC49014.1| ubiquitin 319 4e-87 gi|4809266|gb|AAD30173.1|AF148448_1 polyubiquitin [Sporobolus... 319 4e-87 gi|899608|gb|AAC49025.1| polyubiquitin 319 4e-87 gi|168304|gb|AAA33401.1| ubiquitin 319 4e-87 gi|170354|gb|AAA34124.1| pentameric polyubiquitin 319 4e-87 gi|2760349|gb|AAB95252.1| ubiquitin [Arabidopsis thaliana] 319 4e-87 gi|902584|gb|AAC49013.1| polyubiquitin containing 7 ubiquitin mo 319 4e-87 gi|1684855|gb|AAB36545.1| ubiquitin-like protein [Phaseolus vulg 319 4e-87 gi|1800281|gb|AAB68045.1| polyubiquitin [Fragaria x ananassa] 319 4e-87 gi|2760347|gb|AAB95251.1| ubiquitin [Arabidopsis thaliana] 319 4e-87 gi|87240493|gb|ABD32351.1| Ubiquitin [Medicago truncatula] 319 4e-87 gi|42572839|ref|NP_974516.1| UBQ10 (POLYUBIQUITIN 10); protei... 319 4e-87 gi|33323472|gb|AAQ07453.1| ubiquitin [Musa acuminata] 319 4e-87 gi|18412930|ref|NP_567291.1| UBQ10 (POLYUBIQUITIN 10); protei... 319 4e-87 gi|170352|gb|AAA34123.1| hexameric polyubiquitin >gi|870792|g... 319 4e-87 gi|53850089|emb|CAH59739.1| polyubiquitin [Plantago major] 319 4e-87 gi|53850091|emb|CAH59740.1| polyubiquitin [Plantago major] 319 4e-87 gi|39546234|emb|CAE04243.3| OSJNBa0089N06.4 [Oryza sativa (japon 319 4e-87 gi|20589|emb|CAA34886.1| unnamed protein product [Pisum sativ... 319 4e-87 gi|18420267|ref|NP_568397.1| UBQ4; protein binding [Arabidops... 319 4e-87 gi|226763|prf||1604470A poly-ubiquitin 319 4e-87 gi|115444401|ref|NP_001045980.1| Os02g0161900 [Oryza sativa (... 319 4e-87 gi|248337|gb|AAB21993.1| polyubiquitin [Zea mays] >gi|248339|... 319 4e-87 gi|30679945|ref|NP_851029.1| UBQ3 (POLYUBIQUITIN 3); protein ... 319 4e-87 gi|418854|pir||S30151 polyubiquitin 6 - parsley >gi|288112|em... 319 4e-87 gi|28804499|dbj|BAC57955.1| polyubiquitin [Aster tripolium] 319 4e-87 gi|18412785|ref|NP_567286.1| UBQ11 (UBIQUITIN 11); protein bi... 319 4e-87 gi|320608|pir||S28426 polyubiquitin 4 - wild oat >gi|15989|em... 319 4e-87 gi|18412077|ref|NP_567247.1| UBQ14; protein binding [Arabidop... 319 4e-87 gi|2760345|gb|AAB95250.1| ubiquitin [Arabidopsis thaliana] 318 9e-87 gi|57282601|emb|CAD27944.1| polyubiquitin-like [Oryza sativa] 318 1e-86 gi|35187449|gb|AAQ84316.1| fiber polyubiquitin [Gossypium barbad 318 1e-86 gi|14596193|gb|AAK68824.1| Unknown protein [Arabidopsis thaliana 318 1e-86 gi|3603456|gb|AAC35858.1| polyubiquitin [Capsicum chinense] 318 1e-86 gi|3789942|gb|AAC67552.1| polyubiquitin [Saccharum hybrid cultiv 317 1e-86 gi|110736490|dbj|BAF00213.1| polyubiquitin 4 UBQ4 [Arabidopsis t 317 2e-86 gi|21592581|gb|AAM64530.1| ubiquitin homolog [Arabidopsis thalia 317 2e-86 gi|28436483|gb|AAO43308.1| putative polyubiquitin [Arabidopsis t 316 3e-86 gi|102655942|gb|AAY33920.2| polyubiquitin [Euphorbia characias] 315 6e-86 gi|28436485|gb|AAO43309.1| putative polyubiquitin [Arabidopsis t 315 7e-86 gi|6118549|gb|AAF04147.1| ubiquitin precursor [Hevea brasiliensi 315 7e-86 gi|395295|emb|CAA52290.1| polyubiquitin [Volvox carteri f. nagar 315 1e-85 gi|28436479|gb|AAO43306.1| putative polyubiquitin [Arabidopsis t 314 1e-85 gi|2894304|emb|CAA11267.1| polyubiquitin [Nicotiana tabacum] 313 2e-85 gi|28436476|gb|AAO43305.1| putative polyubiquitin [Arabidopsis t 312 6e-85 gi|28436472|gb|AAO43303.1| putative polyubiquitin [Arabidopsis t 312 6e-85 gi|28436474|gb|AAO43304.1| putative polyubiquitin [Arabidopsis t 312 6e-85 gi|28436487|gb|AAO43310.1| putative polyubiquitin [Arabidopsis t 312 6e-85 gi|15218646|ref|NP_176714.1| UBQ13 [Arabidopsis thaliana] 312 6e-85 gi|7439572|pir||T02358 ubiquitin homolog T8F5.13 - Arabidopsi... 312 6e-85 gi|433970|emb|CAA82268.1| polyubiquitin [Acetabularia peniculus] 310 2e-84 gi|39939489|gb|AAR32784.1| polyubiquitin [Clusia minor] 309 5e-84 gi|2894308|emb|CAA11269.1| polyubiquitin [Nicotiana tabacum] 309 5e-84 gi|28394784|gb|AAO42469.1| putative polyubiquitin [Arabidopsis l 305 8e-83 gi|18421671|ref|NP_568552.1| UBQ9 [Arabidopsis thaliana] >gi|... 305 1e-82 gi|3789940|gb|AAC67551.1| tetra-ubiquitin [Saccharum hybrid cult 303 3e-82 gi|18405196|ref|NP_564675.1| UBQ12 (UBIQUITIN 12) [Arabidopsis t 301 8e-82 gi|71534894|gb|AAZ32851.1| pentameric polyubiquitin [Medicago sa 298 1e-81 gi|6934302|gb|AAF31707.1|AF221858_1 polyubiquitin [Euphorbia esu 295 6e-80 gi|1684857|gb|AAB36546.1| polyubiquitin [Phaseolus vulgaris] 295 6e-80 gi|82512|pir||PS0380 ubiquitin precursor - rice (fragment) >g... 295 6e-80 gi|93278214|gb|ABF06579.1| polyubiquitin [Gladiolus grandiflorus 294 2e-79 gi|40287484|gb|AAR83856.1| hexameric polyubiquitin 6PU11 [Capsic 294 2e-79 gi|29836445|gb|AAM78180.1| putative polyubiquitin [Gossypium ... 294 2e-79 gi|755763|emb|CAA27751.1| unnamed protein product [Hordeum vulga 294 2e-79 gi|73747822|gb|AAZ82816.1| ubiquitin monomer protein [Morus mong 293 3e-79 gi|61889379|emb|CAI51312.2| polyubiquitin [Capsicum chinense] 292 5e-79 gi|21554192|gb|AAM63271.1| unknown [Arabidopsis thaliana] 291 9e-79 gi|37542506|gb|AAL25813.1| polyubiquitin [Prunus avium] 290 2e-78 gi|115469478|ref|NP_001058338.1| Os06g0673500 [Oryza sativa (... 282 7e-76 gi|52077254|dbj|BAD46297.1| pentameric polyubiquitin-like [Or... 282 7e-76 gi|18398638|ref|NP_566357.1| UBQ8 [Arabidopsis thaliana] >gi|... 274 2e-73 gi|6650740|gb|AAF21992.1| polyubiquitin [Lilium longiflorum] 266 3e-71 gi|33327286|gb|AAQ08999.1| polyubiquitin 2 [Phaseolus vulgaris] 261 1e-69 gi|30983942|gb|AAP40646.1| putative polyubiquitin [Gossypium bar 257 2e-68 gi|17016983|gb|AAL33551.1|AF436850_1 polyubiquitin [Cucumis melo 246 6e-65 gi|30692436|ref|NP_564379.2| RUB1 (RELATED TO UBIQUITIN 1) [A... 243 3e-64 gi|20562909|gb|AAM22748.1| polyubiquitin 2 [Deschampsia antarcti 242 6e-64 gi|115469244|ref|NP_001058221.1| Os06g0650100 [Oryza sativa (... 242 8e-64
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 1080 Number of extensions: 30 Number of successful extensions: 9 Number of sequences better than 10: 1 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 3 Number of HSP's successfully gapped: 3 Length of query: 584 Length of database: 101054579 Length adjustment: 107 Effective length of query: 477 Effective length of database: 70736236 Effective search space: 6154052532 Effective search space used: 6154052532 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 64 (29.3 bits)