RID=1168939798-30836-21172786228.BLASTQ1, Contig146

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168939798-30836-21172786228.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig146
Length=280

Distribution of 15 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|15230011|ref|NP_187210.1|  RPL18 (RIBOSOMAL PROTEIN L18); s...   132    3e-31 
gi|15241061|ref|NP_198137.1|  structural constituent of riboso...   131    6e-31 
gi|606970|gb|AAA69928.1|  cytoplasmic ribosomal protein L18         131    6e-31 
gi|92871681|gb|ABE80619.1|  Ribosomal protein L18e [Medicago trun   128    5e-30
gi|115462177|ref|NP_001054688.1|  Os05g0155100 [Oryza sativa (...   127    2e-29 
gi|57471708|gb|AAW50985.1|  ribosomal protein L18 [Triticum aesti   127    2e-29 
gi|115452937|ref|NP_001050069.1|  Os03g0341100 [Oryza sativa (...   126    2e-29 
gi|28798549|gb|AAO46881.1|  60S ribosomal protein [Medicago sativ   126    3e-29
gi|115474037|ref|NP_001060617.1|  Os07g0674700 [Oryza sativa (...   122    5e-28 
gi|109893093|sp|O22254|RL181_ARATH  Putative 60S ribosomal protei   120    1e-27
gi|6094021|sp|O65729|RL18_CICAR  60S ribosomal protein L18 >gi...   120    1e-27
gi|75755833|gb|ABA26976.1|  TO23-2rc [Taraxacum officinale]        85.1    7e-17
gi|116059767|emb|CAL55474.1|  60s ribosomal protein L18 (ISS) [Os  75.1    7e-14
gi|18407393|ref|NP_566104.1|  structural constituent of riboso...  33.9    0.18  
gi|15226749|ref|NP_178839.1|  unknown protein [Arabidopsis tha...  29.3    4.3

Alignments

 

>gi|15230011|ref|NP_187210.1|  RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome 
[Arabidopsis thaliana]
 gi|21431838|sp|P42791|RL182_ARATH  60S ribosomal protein L18-2
 gi|6714451|gb|AAF26138.1|AC011620_14  putative 60S ribosomal protein L18 [Arabidopsis thaliana]
 gi|14335090|gb|AAK59824.1|  AT3g05590/F18C1_14 [Arabidopsis thaliana]
 gi|16974509|gb|AAL31164.1|  AT3g05590/F18C1_14 [Arabidopsis thaliana]
Length=187

 Score =  132 bits (333),  Expect = 3e-31
 Identities = 66/76 (86%), Positives = 70/76 (92%), Gaps = 0/76 (0%)
 Frame = +1

Query  52   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKGNKP  231
            MGIDL+AGGKSKK+KRTAPKSDD+YLKL VKLYRFLVRRT SKFN VILKRLFMSK NK 
Sbjct  1    MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA  60

Query  232  PLSLSRLIEFMKGKED  279
            PLSLSRL+EFM GKED
Sbjct  61   PLSLSRLVEFMTGKED  76


>gi|15241061|ref|NP_198137.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|75163854|sp|Q940B0|RL183_ARATH  60S ribosomal protein L18-3
 gi|15810153|gb|AAL07220.1|  putative 60S ribosomal protein [Arabidopsis thaliana]
 gi|21689771|gb|AAM67529.1|  putative 60S ribosomal protein [Arabidopsis thaliana]
 gi|23397141|gb|AAN31854.1|  putative 60S ribosomal protein [Arabidopsis thaliana]
Length=187

 Score =  131 bits (330),  Expect = 6e-31
 Identities = 65/76 (85%), Positives = 71/76 (93%), Gaps = 0/76 (0%)
 Frame = +1

Query  52   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKGNKP  231
            MGIDL+AGGKSKK+KRTAPKSDD+YLKLLVKLYRFLVRR+ S FNAVILKRLFMSK NK 
Sbjct  1    MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA  60

Query  232  PLSLSRLIEFMKGKED  279
            PLSLSRL+EFM GK+D
Sbjct  61   PLSLSRLVEFMTGKDD  76


>gi|606970|gb|AAA69928.1|  cytoplasmic ribosomal protein L18
Length=187

 Score =  131 bits (330),  Expect = 6e-31
 Identities = 65/76 (85%), Positives = 70/76 (92%), Gaps = 0/76 (0%)
 Frame = +1

Query  52   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKGNKP  231
            MGIDL+AGGKSKK+KRTAPKSDD+YLKL VKLYRFLVRRT SKFN VILKRLFMSK N+ 
Sbjct  1    MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNRA  60

Query  232  PLSLSRLIEFMKGKED  279
            PLSLSRL+EFM GKED
Sbjct  61   PLSLSRLVEFMTGKED  76


>gi|92871681|gb|ABE80619.1|  Ribosomal protein L18e [Medicago truncatula]
Length=187

 Score =  128 bits (322),  Expect = 5e-30
 Identities = 65/75 (86%), Positives = 70/75 (93%), Gaps = 0/75 (0%)
 Frame = +1

Query  52   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKGNKP  231
            MGIDL AGGK+KK+KRTAPKS+DIYLKLLVKLYRFLVRRTGS FNAVILKRLFMSK NKP
Sbjct  1    MGIDLKAGGKNKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP  60

Query  232  PLSLSRLIEFMKGKE  276
            PLSLSRLI++  GKE
Sbjct  61   PLSLSRLIKYTNGKE  75


>gi|115462177|ref|NP_001054688.1|  Os05g0155100 [Oryza sativa (japonica cultivar-group)]
 gi|54291850|gb|AAV32218.1|  cytoplasmic ribosomal protein L18 [Oryza sativa (japonica cultivar-group)]
 gi|113578239|dbj|BAF16602.1|  Os05g0155100 [Oryza sativa (japonica cultivar-group)]
Length=188

 Score =  127 bits (318),  Expect = 2e-29
 Identities = 62/76 (81%), Positives = 71/76 (93%), Gaps = 0/76 (0%)
 Frame = +1

Query  52   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKGNKP  231
            MGIDLVAGG++KK+KRTAP+SDD+YLKLLVKLYRFLVRRT S FNAVILKRLFMSK N+P
Sbjct  1    MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP  60

Query  232  PLSLSRLIEFMKGKED  279
            PLSL RL +FM+GKE+
Sbjct  61   PLSLRRLAKFMEGKEE  76


>gi|57471708|gb|AAW50985.1|  ribosomal protein L18 [Triticum aestivum]
Length=188

 Score =  127 bits (318),  Expect = 2e-29
 Identities = 62/76 (81%), Positives = 70/76 (92%), Gaps = 0/76 (0%)
 Frame = +1

Query  52   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKGNKP  231
            MGIDLVAGG++K++KR APKSDD+YLKLLVKLYRFLVRRT SKFNAVILKRLFMSK N+P
Sbjct  1    MGIDLVAGGRNKRTKRVAPKSDDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFMSKTNRP  60

Query  232  PLSLSRLIEFMKGKED  279
            PLS+ RL  FMKGKE+
Sbjct  61   PLSMRRLSNFMKGKEE  76


>gi|115452937|ref|NP_001050069.1|  Os03g0341100 [Oryza sativa (japonica cultivar-group)]
 gi|108708066|gb|ABF95861.1|  60S ribosomal protein L18, putative, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113548540|dbj|BAF11983.1|  Os03g0341100 [Oryza sativa (japonica cultivar-group)]
Length=187

 Score =  126 bits (317),  Expect = 2e-29
 Identities = 61/76 (80%), Positives = 71/76 (93%), Gaps = 0/76 (0%)
 Frame = +1

Query  52   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKGNKP  231
            MGIDLVAGG++KK+KRTAPKSDD+YLKL+VKLYRFLVRRT S FNAVIL+RLFMSK N+P
Sbjct  1    MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP  60

Query  232  PLSLSRLIEFMKGKED  279
            PLSL RL+ FM+GKE+
Sbjct  61   PLSLRRLVRFMEGKEN  76


>gi|28798549|gb|AAO46881.1|  60S ribosomal protein [Medicago sativa]
Length=164

 Score =  126 bits (316),  Expect = 3e-29
 Identities = 65/75 (86%), Positives = 68/75 (90%), Gaps = 0/75 (0%)
 Frame = +1

Query  52   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKGNKP  231
            MGIDL AGGKSKK+KRTAPKS+DIYLKLLVKLYRFLVRRT S FN VILKRLFMSK NKP
Sbjct  1    MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTESNFNKVILKRLFMSKVNKP  60

Query  232  PLSLSRLIEFMKGKE  276
            PLSLSRLI + KGKE
Sbjct  61   PLSLSRLIRYTKGKE  75


>gi|115474037|ref|NP_001060617.1|  Os07g0674700 [Oryza sativa (japonica cultivar-group)]
 gi|34393858|dbj|BAC83538.1|  putative cytoplasmic ribosomal protein L18 [Oryza sativa (japonica 
cultivar-group)]
 gi|50509811|dbj|BAD31974.1|  putative cytoplasmic ribosomal protein L18 [Oryza sativa (japonica 
cultivar-group)]
 gi|113612153|dbj|BAF22531.1|  Os07g0674700 [Oryza sativa (japonica cultivar-group)]
Length=195

 Score =  122 bits (305),  Expect = 5e-28
 Identities = 58/74 (78%), Positives = 69/74 (93%), Gaps = 0/74 (0%)
 Frame = +1

Query  52   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKGNKP  231
            MGIDLVAGG++KK+KRTAP+S+D+YLKL+VKLYRFLVRRT S FNAVILKRLFMSK N+P
Sbjct  1    MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP  60

Query  232  PLSLSRLIEFMKGK  273
            PLS+ RL+ FM+GK
Sbjct  61   PLSMRRLVRFMEGK  74


>gi|109893093|sp|O22254|RL181_ARATH  Putative 60S ribosomal protein L18-1
Length=188

 Score =  120 bits (301),  Expect = 1e-27
 Identities = 60/75 (80%), Positives = 67/75 (89%), Gaps = 0/75 (0%)
 Frame = +1

Query  52   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKGNKP  231
            MGIDL+AGGKSKK+KRT PKSDD+YLKLLVK  R+LVRRT SKFNAVILKRLFMSK NK 
Sbjct  1    MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA  60

Query  232  PLSLSRLIEFMKGKE  276
            PLSLSRL+ +M GK+
Sbjct  61   PLSLSRLVRYMDGKD  75


>gi|6094021|sp|O65729|RL18_CICAR  60S ribosomal protein L18
 gi|3021348|emb|CAA06246.1|  ribosomal protein L18 [Cicer arietinum]
Length=183

 Score =  120 bits (301),  Expect = 1e-27
 Identities = 60/72 (83%), Positives = 68/72 (94%), Gaps = 0/72 (0%)
 Frame = +1

Query  61   DLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKGNKPPLS  240
            DL AGGK+KK+KRT+PKS+DIYLKLLVKLYRFLVRRT S FNAVILKRLFMSK N+PPLS
Sbjct  1    DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS  60

Query  241  LSRLIEFMKGKE  276
            LSRLI++M+GKE
Sbjct  61   LSRLIKYMQGKE  72


>gi|75755833|gb|ABA26976.1|  TO23-2rc [Taraxacum officinale]
Length=102

 Score = 85.1 bits (209),  Expect = 7e-17
 Identities = 41/50 (82%), Positives = 45/50 (90%), Gaps = 0/50 (0%)
 Frame = +1

Query  130  KLLVKLYRFLVRRTGSKFNAVILKRLFMSKGNKPPLSLSRLIEFMKGKED  279
            KLLVKLYRFLVRRTGS FNAVILKRLFMSK NKPP+S SRL+ +M GK+D
Sbjct  1    KLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISFSRLVRYMAGKDD  50


>gi|116059767|emb|CAL55474.1|  60s ribosomal protein L18 (ISS) [Ostreococcus tauri]
Length=181

 Score = 75.1 bits (183),  Expect = 7e-14
 Identities = 35/45 (77%), Positives = 40/45 (88%), Gaps = 0/45 (0%)
 Frame = +1

Query  142  KLYRFLVRRTGSKFNAVILKRLFMSKGNKPPLSLSRLIEFMKGKE  276
            +LYRFL RRTGSKFN  +LKRLFMSK N+PPLSLS+L +FMKGKE
Sbjct  26   QLYRFLARRTGSKFNETVLKRLFMSKTNRPPLSLSKLAKFMKGKE  70


>gi|18407393|ref|NP_566104.1|  structural constituent of ribosome [Arabidopsis thaliana]
 gi|20196960|gb|AAC62853.2|  60S ribosomal protein L18, 5'partial [Arabidopsis thaliana]
Length=135

 Score = 33.9 bits (76),  Expect = 0.18
 Identities = 15/22 (68%), Positives = 18/22 (81%), Gaps = 0/22 (0%)
 Frame = +1

Query  211  MSKGNKPPLSLSRLIEFMKGKE  276
            MSK NK PLSLSRL+ +M GK+
Sbjct  1    MSKVNKAPLSLSRLVRYMDGKD  22


>gi|15226749|ref|NP_178839.1|  unknown protein [Arabidopsis thaliana]
 gi|4733976|gb|AAD28658.1|  putative replication protein A1 [Arabidopsis thaliana]
Length=267

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 5/34 (14%)
 Frame = -1

Query  124  KYHQIWELS----SWTSCSYLLRLNRSPL-PNAF  38
            ++H ++ELS     WT C  +LR+N+  L PNAF
Sbjct  3    QHHNLYELSPMDTGWTICVMVLRINKKFLNPNAF  36

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 206
Number of extensions: 4
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 280
Length of database: 101054579
Length adjustment: 63
Effective length of query: 217
Effective length of database: 83203592
Effective search space: 2496107760
Effective search space used: 2496107760
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)