RID=1168939820-7452-54554661405.BLASTQ4, Contig148

Alignments
 

>gi|51490665|emb|CAG26903.1|  ALY protein [Nicotiana benthamiana]
Length=252

 Score = 93.6 bits (231),  Expect = 2e-19
 Identities = 51/68 (75%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGK--  175
            RSGRSKGTAEVVFSRR DA  A KRYN VQLDGKPMKIEIVGTN+ATP A  PA NG   
Sbjct  128  RSGRSKGTAEVVFSRRQDALAAVKRYNNVQLDGKPMKIEIVGTNIATPAA--PAFNGAFG  185

Query  176  FANPNGVP  199
            F + NG P
Sbjct  186  FGDTNGGP  193


>gi|94466657|emb|CAJ44457.1|  ALY protein [Nicotiana benthamiana]
Length=246

 Score = 88.6 bits (218),  Expect = 6e-18
 Identities = 43/66 (65%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            +SGRSKGTAEV+FSRR DA  A K+YN VQLDGKPMKIE  G N+  P ALPP  N  + 
Sbjct  128  KSGRSKGTAEVIFSRRRDAEAAIKKYNNVQLDGKPMKIEFAGPNIGAP-ALPPIRNRLYR  186

Query  182  NPNGVP  199
            NPN  P
Sbjct  187  NPNPAP  192


>gi|51490663|emb|CAG26902.1|  ALY protein [Nicotiana benthamiana]
Length=249

 Score = 87.0 bits (214),  Expect = 2e-17
 Identities = 42/66 (63%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            +SGRSKGTAEV+FSRR DA  A K+YN VQLDGKPMKIE  G N+  P  LPP  N  + 
Sbjct  131  KSGRSKGTAEVIFSRRRDAEAAIKKYNNVQLDGKPMKIEFAGPNIGAP-TLPPLRNRLYR  189

Query  182  NPNGVP  199
            NPN  P
Sbjct  190  NPNPAP  195


>gi|115452249|ref|NP_001049725.1|  Os03g0278300 [Oryza sativa (japonica cultivar-group)]
 gi|108707486|gb|ABF95281.1|  RNA and export factor-binding protein, putative, expressed [Oryza 
sativa (japonica cultivar-group)]
 gi|113548196|dbj|BAF11639.1|  Os03g0278300 [Oryza sativa (japonica cultivar-group)]
Length=273

 Score = 85.5 bits (210),  Expect = 5e-17
 Identities = 42/59 (71%), Positives = 46/59 (77%), Gaps = 0/59 (0%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKF  178
            RSGRSKGTAEVVF+RR DA  A K+YN VQLDGKPMKIEI+GTN  T  A  PA NG +
Sbjct  141  RSGRSKGTAEVVFARRGDAVAAVKKYNNVQLDGKPMKIEILGTNTPTAAAALPANNGGY  199


>gi|108707487|gb|ABF95282.1|  RNA and export factor-binding protein, putative, expressed [Oryza 
sativa (japonica cultivar-group)]
 gi|108707488|gb|ABF95283.1|  RNA and export factor-binding protein, putative, expressed [Oryza 
sativa (japonica cultivar-group)]
Length=193

 Score = 85.5 bits (210),  Expect = 5e-17
 Identities = 42/59 (71%), Positives = 46/59 (77%), Gaps = 0/59 (0%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKF  178
            RSGRSKGTAEVVF+RR DA  A K+YN VQLDGKPMKIEI+GTN  T  A  PA NG +
Sbjct  61   RSGRSKGTAEVVFARRGDAVAAVKKYNNVQLDGKPMKIEILGTNTPTAAAALPANNGGY  119


>gi|42573738|ref|NP_974965.1|  nucleic acid binding [Arabidopsis thaliana]
Length=242

 Score = 82.8 bits (203),  Expect = 3e-16
 Identities = 44/66 (66%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            RSGRSKGTAEVV+SRR DA  A K+YN VQLDGKPMKIEIVGTN+ T  A  P+      
Sbjct  121  RSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAA--PSGRPANG  178

Query  182  NPNGVP  199
            N NG P
Sbjct  179  NSNGAP  184


>gi|21555029|gb|AAM63758.1|  transcriptional coactivator-like protein [Arabidopsis thaliana]
Length=243

 Score = 82.8 bits (203),  Expect = 3e-16
 Identities = 44/66 (66%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            RSGRSKGTAEVV+SRR DA  A K+YN VQLDGKPMKIEIVGTN+ T  A  P+      
Sbjct  123  RSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAA--PSGRPANG  180

Query  182  NPNGVP  199
            N NG P
Sbjct  181  NSNGAP  186


>gi|30697310|ref|NP_851229.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|22531190|gb|AAM97099.1|  transcriptional coactivator-like protein [Arabidopsis thaliana]
 gi|23198018|gb|AAN15536.1|  transcriptional coactivator-like protein [Arabidopsis thaliana]
Length=244

 Score = 82.8 bits (203),  Expect = 3e-16
 Identities = 44/66 (66%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            RSGRSKGTAEVV+SRR DA  A K+YN VQLDGKPMKIEIVGTN+ T  A  P+      
Sbjct  123  RSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAA--PSGRPANG  180

Query  182  NPNGVP  199
            N NG P
Sbjct  181  NSNGAP  186


>gi|42568662|ref|NP_200803.3|  nucleic acid binding [Arabidopsis thaliana]
Length=178

 Score = 82.8 bits (203),  Expect = 3e-16
 Identities = 44/66 (66%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            RSGRSKGTAEVV+SRR DA  A K+YN VQLDGKPMKIEIVGTN+ T  A  P+      
Sbjct  57   RSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAA--PSGRPANG  114

Query  182  NPNGVP  199
            N NG P
Sbjct  115  NSNGAP  120


>gi|115486846|ref|NP_001065229.1|  Os12g0100100 [Oryza sativa (japonica cultivar-group)]
 gi|77553349|gb|ABA96145.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
 gi|113648417|dbj|BAF28929.1|  Os12g0100100 [Oryza sativa (japonica cultivar-group)]
Length=228

 Score = 82.0 bits (201),  Expect = 6e-16
 Identities = 43/64 (67%), Positives = 49/64 (76%), Gaps = 4/64 (6%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            RSGRSKGTAEVVFSR++DA  A KRYN VQLDGKPMK+E++G N+  P   PPA  G FA
Sbjct  107  RSGRSKGTAEVVFSRKSDALAAVKRYNNVQLDGKPMKLELIGINIEPP---PPAIFG-FA  162

Query  182  NPNG  193
             P G
Sbjct  163  APAG  166


>gi|115483699|ref|NP_001065221.1|  Os11g0100200 [Oryza sativa (japonica cultivar-group)]
 gi|113644215|dbj|BAF27356.1|  Os11g0100200 [Oryza sativa (japonica cultivar-group)]
Length=174

 Score = 80.9 bits (198),  Expect = 1e-15
 Identities = 42/64 (65%), Positives = 49/64 (76%), Gaps = 4/64 (6%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            +SGRSKGTAEVVFSR++DA  A KRYN VQLDGKPMK+E++G N+  P   PPA  G FA
Sbjct  103  KSGRSKGTAEVVFSRKSDALAAVKRYNNVQLDGKPMKLELIGINIEPP---PPAMFG-FA  158

Query  182  NPNG  193
             P G
Sbjct  159  APAG  162


>gi|77548276|gb|ABA91073.1|  RNA recognition motif family protein, expressed [Oryza sativa 
(japonica cultivar-group)]
Length=224

 Score = 80.9 bits (198),  Expect = 1e-15
 Identities = 42/64 (65%), Positives = 49/64 (76%), Gaps = 4/64 (6%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            +SGRSKGTAEVVFSR++DA  A KRYN VQLDGKPMK+E++G N+  P   PPA  G FA
Sbjct  103  KSGRSKGTAEVVFSRKSDALAAVKRYNNVQLDGKPMKLELIGINIEPP---PPAMFG-FA  158

Query  182  NPNG  193
             P G
Sbjct  159  APAG  162


>gi|30679669|ref|NP_195873.2|  nucleic acid binding [Arabidopsis thaliana]
 gi|22655123|gb|AAM98152.1|  putative protein [Arabidopsis thaliana]
 gi|30023796|gb|AAP13431.1|  At5g02530 [Arabidopsis thaliana]
Length=292

 Score = 80.5 bits (197),  Expect = 2e-15
 Identities = 45/70 (64%), Positives = 48/70 (68%), Gaps = 7/70 (10%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATP-------VALPP  160
            RSGRSKGTAEVVFSRR DA  A KRYN VQLDGK MKIEIVGTN++ P         +P 
Sbjct  143  RSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKIEIVGTNLSAPALPILATAQIPF  202

Query  161  ATNGKFANPN  190
             TNG   N N
Sbjct  203  PTNGILGNFN  212


>gi|7413642|emb|CAB85990.1|  putative protein [Arabidopsis thaliana]
Length=290

 Score = 80.5 bits (197),  Expect = 2e-15
 Identities = 45/70 (64%), Positives = 48/70 (68%), Gaps = 7/70 (10%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATP-------VALPP  160
            RSGRSKGTAEVVFSRR DA  A KRYN VQLDGK MKIEIVGTN++ P         +P 
Sbjct  143  RSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKIEIVGTNLSAPALPILATAQIPF  202

Query  161  ATNGKFANPN  190
             TNG   N N
Sbjct  203  PTNGILGNFN  212


>gi|9757916|dbj|BAB08363.1|  RNA and export factor binding protein 2-I-like protein [Arabidopsis 
thaliana]
Length=239

 Score = 80.1 bits (196),  Expect = 2e-15
 Identities = 43/64 (67%), Positives = 47/64 (73%), Gaps = 2/64 (3%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            RSGRSKGTAEVV+SRR DA  A K+YN VQLDGKPMKIEIVGTN+ T  A  P+      
Sbjct  123  RSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAA--PSGRPANG  180

Query  182  NPNG  193
            N NG
Sbjct  181  NSNG  184


>gi|33146678|dbj|BAC80073.1|  putative RNA and export factor binding protein [Oryza sativa 
(japonica cultivar-group)]
Length=323

 Score = 69.3 bits (168),  Expect = 4e-12
 Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVAT---PVALPPATNG  172
            + G+S+GTAEVVF+R+ DA  A KRY+GV LDG PMKI+++G N  T   P   P   N 
Sbjct  174  KDGKSQGTAEVVFARKVDALEAIKRYDGVILDGNPMKIDLIGNNSETSPMPPTAPLLYNP  233

Query  173  KFAN-PNGVP  199
             F N PN VP
Sbjct  234  PFPNYPNSVP  243


>gi|115471303|ref|NP_001059250.1|  Os07g0237100 [Oryza sativa (japonica cultivar-group)]
 gi|113610786|dbj|BAF21164.1|  Os07g0237100 [Oryza sativa (japonica cultivar-group)]
Length=134

 Score = 65.1 bits (157),  Expect = 7e-11
 Identities = 35/67 (52%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVAT---PVALPPATNG  172
            + G+S+GTAEVVF+R+ DA  A KRY+GV LDG PMKI+++G N  T   P   P   N 
Sbjct  61   KDGKSQGTAEVVFARKVDALEAIKRYDGVILDGNPMKIDLIGNNSETSPMPPTAPLLYNP  120

Query  173  KFAN-PN  190
             F N PN
Sbjct  121  PFPNYPN  127


>gi|46982390|gb|AAT08172.1|  Hin19 [Nicotiana tabacum]
Length=219

 Score = 65.1 bits (157),  Expect = 7e-11
 Identities = 30/50 (60%), Positives = 38/50 (76%), Gaps = 0/50 (0%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVA  151
            ++GR  G AEVVF+RR+DA  A KRYN VQLDGKPMKIE+V  +   P++
Sbjct  75   KNGRPSGAAEVVFARRSDAYQAHKRYNNVQLDGKPMKIEVVAPSTGMPLS  124


>gi|115476498|ref|NP_001061845.1|  Os08g0427900 [Oryza sativa (japonica cultivar-group)]
 gi|38175495|dbj|BAD01191.1|  putative transcriptional coactivator(DIP2) [Oryza sativa (japonica 
cultivar-group)]
 gi|38175772|dbj|BAD01466.1|  putative transcriptional coactivator(DIP2) [Oryza sativa (japonica 
cultivar-group)]
 gi|113623814|dbj|BAF23759.1|  Os08g0427900 [Oryza sativa (japonica cultivar-group)]
Length=286

 Score = 64.7 bits (156),  Expect = 9e-11
 Identities = 32/60 (53%), Positives = 43/60 (71%), Gaps = 4/60 (6%)
 Frame = +2

Query  8    GRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATP----VALPPATNGK  175
            GR  GTAEVVF+RR+DA  A KRYN V LDGK MKIE++G+++  P    + +  A+NG+
Sbjct  127  GRPNGTAEVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLGLPMTPRINVVGASNGR  186


>gi|94466659|emb|CAJ44458.1|  ALY protein [Nicotiana benthamiana]
Length=275

 Score = 64.3 bits (155),  Expect = 1e-10
 Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            ++GR  G AEVVF+RR+DA  A KRYN VQLDGKPMKIE+    VA P  +P +      
Sbjct  132  KNGRPSGAAEVVFARRSDAYQALKRYNNVQLDGKPMKIEV----VAPPTDMPLSARVDVG  187

Query  182  NPNG  193
              NG
Sbjct  188  RGNG  191


>gi|92867240|gb|ABE77582.1|  Hin19-related [Medicago truncatula]
 gi|92872386|gb|ABE81045.1|  Hin19-related [Medicago truncatula]
 gi|92888327|gb|ABE89345.1|  Hin19-related [Medicago truncatula]
Length=118

 Score = 64.3 bits (155),  Expect = 1e-10
 Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 0/43 (0%)
 Frame = +2

Query  20   GTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPV  148
            G+AEVV++RR+DA  A KRYN V LDGKPMKIEIVGTN   PV
Sbjct  18   GSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSELPV  60


>gi|30693141|ref|NP_198588.2|  nucleic acid binding [Arabidopsis thaliana]
 gi|37201990|gb|AAQ89610.1|  At5g37720 [Arabidopsis thaliana]
 gi|110735849|dbj|BAE99901.1|  hypothetical protein [Arabidopsis thaliana]
Length=288

 Score = 61.6 bits (148),  Expect = 8e-10
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 0/64 (0%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            ++GR  GTAEVV+ RR+DA  A K+YN V LDG+PM++EI+G N ++   L    N    
Sbjct  128  KNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVT  187

Query  182  NPNG  193
              NG
Sbjct  188  GLNG  191


>gi|9663025|emb|CAC01084.1|  DIP2 protein [Arabidopsis thaliana]
Length=288

 Score = 61.6 bits (148),  Expect = 8e-10
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 0/64 (0%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            ++GR  GTAEVV+ RR+DA  A K+YN V LDG+PM++EI+G N ++   L    N    
Sbjct  128  KNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVT  187

Query  182  NPNG  193
              NG
Sbjct  188  GLNG  191


>gi|9757981|dbj|BAB08317.1|  unnamed protein product [Arabidopsis thaliana]
Length=330

 Score = 61.6 bits (148),  Expect = 8e-10
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 0/64 (0%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFA  181
            ++GR  GTAEVV+ RR+DA  A K+YN V LDG+PM++EI+G N ++   L    N    
Sbjct  170  KNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVT  229

Query  182  NPNG  193
              NG
Sbjct  230  GLNG  233


>gi|115467430|ref|NP_001057314.1|  Os06g0256200 [Oryza sativa (japonica cultivar-group)]
 gi|52077258|dbj|BAD46300.1|  putative DIP2 protein [Oryza sativa (japonica cultivar-group)]
 gi|113595354|dbj|BAF19228.1|  Os06g0256200 [Oryza sativa (japonica cultivar-group)]
Length=294

 Score = 60.8 bits (146),  Expect = 1e-09
 Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 6/61 (9%)
 Frame = +2

Query  11   RSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNV------ATPVALPPATNG  172
            R  G+AEV+F+RR++A  A KRYN V+LDGKPMKIE++G ++      A  V++ P   G
Sbjct  148  RPTGSAEVIFTRRSEAVAALKRYNNVRLDGKPMKIEVIGADLGMAAPSAPRVSVVPGARG  207

Query  173  K  175
            +
Sbjct  208  R  208


>gi|9663023|emb|CAC01083.1|  DIP1 protein [Arabidopsis thaliana]
Length=295

 Score = 58.9 bits (141),  Expect = 5e-09
 Identities = 28/51 (54%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNV-ATPVA  151
            ++GR  G+AEVV+ RR+DA  A ++YN V LDG+PMK+EI+G N  + PVA
Sbjct  142  KNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVA  192


>gi|18408471|ref|NP_564871.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|15294238|gb|AAK95296.1|AF410310_1  At1g66260/T6J19_1 [Arabidopsis thaliana]
 gi|23506135|gb|AAN31079.1|  At1g66260/T6J19_1 [Arabidopsis thaliana]
Length=295

 Score = 58.9 bits (141),  Expect = 5e-09
 Identities = 28/51 (54%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNV-ATPVA  151
            ++GR  G+AEVV+ RR+DA  A ++YN V LDG+PMK+EI+G N  + PVA
Sbjct  142  KNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVA  192


>gi|12323574|gb|AAG51767.1|AC066691_7  RNA and export factor binding protein, putative; 38196-36208 
[Arabidopsis thaliana]
Length=282

 Score = 58.9 bits (141),  Expect = 5e-09
 Identities = 28/51 (54%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNV-ATPVA  151
            ++GR  G+AEVV+ RR+DA  A ++YN V LDG+PMK+EI+G N  + PVA
Sbjct  129  KNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVA  179


>gi|40644804|emb|CAE53910.1|  putative DIP2 protein [Triticum aestivum]
Length=259

 Score = 55.8 bits (133),  Expect = 4e-08
 Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 0/50 (0%)
 Frame = +2

Query  20   GTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATN  169
            G+AEV+F+RR++A  A KRYN V+LDGK M+ E++G N+    A  P  N
Sbjct  156  GSAEVIFTRRSEAVQALKRYNNVRLDGKEMRREMIGANLGLAAAPAPRVN  205


>gi|116054751|emb|CAL56828.1|  FOG: RRM domain (ISS) [Ostreococcus tauri]
Length=276

 Score = 44.7 bits (104),  Expect = 1e-04
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 0/40 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIV  124
            +G+SKGTAEV  +    A  A   YNGV+LDG+P++I IV
Sbjct  145  NGKSKGTAEVTLATLDSAMKAVSTYNGVKLDGRPLQIVIV  184


>gi|3550485|emb|CAA11894.1|  cp33Hv [Hordeum vulgare subsp. vulgare]
Length=344

 Score = 38.1 bits (87),  Expect = 0.009
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPAT  166
            +GRS+G   V F    DA  A +  +GV+LDG+P+++ +   N   P    P+T
Sbjct  249  TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQN--PPAGSTPST  300


>gi|115470657|ref|NP_001058927.1|  Os07g0158300 [Oryza sativa (japonica cultivar-group)]
 gi|34394882|dbj|BAC84331.1|  putative RNA-binding protein [Oryza sativa (japonica cultivar-group)]
 gi|113610463|dbj|BAF20841.1|  Os07g0158300 [Oryza sativa (japonica cultivar-group)]
Length=348

 Score = 38.1 bits (87),  Expect = 0.009
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPAT  166
            SGRS+G   V F    DA  A +  +GV+L+G+P+++ +   N   P A  P+T
Sbjct  257  SGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSMAEQN---PTAGSPST  307


>gi|133249|sp|P19684|ROC5_NICSY  33 kDa ribonucleoprotein, chloroplast precursor
 gi|100390|pir||S12111  ribonucleoprotein, 33K, precursor - common tobacco
 gi|20005|emb|CAA37879.1|  unnamed protein product [Nicotiana tabacum]
Length=324

 Score = 36.2 bits (82),  Expect = 0.035
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPP  160
            SGRS+G   + FS       A    N V+L+G+P+++ + G     PV+ PP
Sbjct  254  SGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQK--APVSSPP  303


>gi|21617920|gb|AAM66970.1|  putative RNA-binding protein [Arabidopsis thaliana]
Length=289

 Score = 34.3 bits (77),  Expect = 0.13
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 0/37 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKI  115
            +GRS+G   V  S  ++   A +++NG +LDG+P+++
Sbjct  128  TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV  164


 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 0/37 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKI  115
            SGRSKG   V +    +   A K  +G  LDG+ +++
Sbjct  241  SGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV  277


>gi|15228102|ref|NP_181259.1|  RNA binding / nucleic acid binding [Arabidopsis thaliana]
 gi|12230623|sp|Q9ZUU4|ROC1_ARATH  Putative ribonucleoprotein At2g37220, chloroplast precursor
 gi|13877809|gb|AAK43982.1|AF370167_1  putative RNA-binding protein [Arabidopsis thaliana]
 gi|4056477|gb|AAC98043.1|  putative RNA-binding protein [Arabidopsis thaliana]
 gi|15081717|gb|AAK82513.1|  At2g37220/F3G5.1 [Arabidopsis thaliana]
 gi|16323482|gb|AAL15235.1|  putative RNA-binding protein [Arabidopsis thaliana]
 gi|20197716|gb|AAM15222.1|  putative RNA-binding protein [Arabidopsis thaliana]
Length=289

 Score = 34.3 bits (77),  Expect = 0.13
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 0/37 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKI  115
            +GRS+G   V  S  ++   A +++NG +LDG+P+++
Sbjct  128  TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV  164


 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 0/37 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKI  115
            SGRSKG   V +    +   A K  +G  LDG+ +++
Sbjct  241  SGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV  277


>gi|115477903|ref|NP_001062547.1|  Os08g0567200 [Oryza sativa (japonica cultivar-group)]
 gi|42409101|dbj|BAD10352.1|  putative RNA recognition motif (RRM)-containing protein [Oryza 
sativa (japonica cultivar-group)]
 gi|46804978|dbj|BAD17833.1|  putative RNA recognition motif (RRM)-containing protein [Oryza 
sativa (japonica cultivar-group)]
 gi|113624516|dbj|BAF24461.1|  Os08g0567200 [Oryza sativa (japonica cultivar-group)]
Length=235

 Score = 33.9 bits (76),  Expect = 0.18
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 0/38 (0%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKI  115
            R+G++KG   V FS  TD A A K  NG  +  +P+K+
Sbjct  163  RTGKTKGYGFVSFSNPTDLAGAIKEMNGKYVGNRPIKL  200


>gi|115480531|ref|NP_001063859.1|  Os09g0549500 [Oryza sativa (japonica cultivar-group)]
 gi|50725127|dbj|BAD33744.1|  putative MADP-1 protein [Oryza sativa (japonica cultivar-group)]
 gi|50726297|dbj|BAD33872.1|  putative MADP-1 protein [Oryza sativa (japonica cultivar-group)]
 gi|113632092|dbj|BAF25773.1|  Os09g0549500 [Oryza sativa (japonica cultivar-group)]
Length=274

 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 0/43 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTN  133
            S RS+G A V+F RR DAA A    +G  L+G+ +   I   N
Sbjct  107  SRRSRGVAFVLFVRREDAAAAAAEMHGKVLNGRTLSASIAEDN  149


>gi|121077603|gb|ABM47305.1|  nucleic acid binding protein [Volvox carteri f. nagariensis]
Length=242

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 0/38 (0%)
 Frame = +2

Query  8    GRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEI  121
            GRS+G   V F+ + DAA A ++ N  Q+DG+ + + +
Sbjct  201  GRSRGFGTVRFATKEDAAQACEKMNNSQIDGRTISVRL  238


>gi|115459296|ref|NP_001053248.1|  Os04g0504800 [Oryza sativa (japonica cultivar-group)]
 gi|32490269|emb|CAE05558.1|  OSJNBb0116K07.11 [Oryza sativa (japonica cultivar-group)]
 gi|113564819|dbj|BAF15162.1|  Os04g0504800 [Oryza sativa (japonica cultivar-group)]
Length=659

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 0/37 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKI  115
            +G SKG+  V FS R +A+ A    NG  + GKP+ +
Sbjct  357  NGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV  393


 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 0/37 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKI  115
            S RS G A V F+   DAA A +  N   L+GKP+++
Sbjct  76   SRRSLGYAYVNFNNPVDAARALELLNFAPLNGKPIRV  112


>gi|30527347|gb|AAN77901.2|  putative nucleic acid binding protein [Chlamydomonas reinhardtii]
Length=247

 Score = 33.1 bits (74),  Expect = 0.30
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 0/38 (0%)
 Frame = +2

Query  8    GRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEI  121
            GRS+G   V F+ + DAA A  + N  Q+DG+ + + +
Sbjct  206  GRSRGFGTVRFTTKEDAATACDKLNNSQIDGRTISVRL  243


>gi|311952|emb|CAA41253.1|  33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length=319

 Score = 32.7 bits (73),  Expect = 0.39
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 0/41 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVG  127
            SGRS+G   + FS       A    N V+L+G+P+++ + G
Sbjct  249  SGRSRGFGFITFSSAEAMKSALDTMNEVELEGRPLRLNVAG  289


>gi|115461392|ref|NP_001054296.1|  Os04g0682400 [Oryza sativa (japonica cultivar-group)]
 gi|113565867|dbj|BAF16210.1|  Os04g0682400 [Oryza sativa (japonica cultivar-group)]
Length=1008

 Score = 32.3 bits (72),  Expect = 0.51
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 0/43 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTN  133
            +G SKG   V F+    AAVA    NG  LDG  +++ I G +
Sbjct  821  TGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGVH  863


>gi|90399074|emb|CAJ86296.1|  H0124B04.13 [Oryza sativa (indica cultivar-group)]
Length=913

 Score = 32.3 bits (72),  Expect = 0.51
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 0/43 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTN  133
            +G SKG   V F+    AAVA    NG  LDG  +++ I G +
Sbjct  726  TGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGVH  768


>gi|38345560|emb|CAE03434.2|  OSJNBa0032F06.17 [Oryza sativa (japonica cultivar-group)]
Length=924

 Score = 32.3 bits (72),  Expect = 0.51
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 0/43 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTN  133
            +G SKG   V F+    AAVA    NG  LDG  +++ I G +
Sbjct  737  TGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGVH  779


>gi|1350820|sp|P49313|ROC1_NICPL  30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)
 gi|19708|emb|CAA46234.1|  RNA binding protein 30 [Nicotiana plumbaginifolia]
Length=279

 Score = 32.3 bits (72),  Expect = 0.51
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 0/37 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKI  115
            +GRS+G   V  S + +   A +++NG +LDG+ +++
Sbjct  124  TGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV  160


>gi|12230584|sp|Q08935|ROC1_NICSY  29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)
 gi|19754|emb|CAA43427.1|  29kD A ribonucleoprotein [Nicotiana sylvestris]
Length=273

 Score = 32.3 bits (72),  Expect = 0.51
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 0/37 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKI  115
            +GRS+G   V  S + +   A +++NG +LDG+ +++
Sbjct  124  TGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV  160


>gi|1350821|sp|P49314|ROC2_NICPL  31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)
 gi|19710|emb|CAA46233.1|  RNA binding protein 31 [Nicotiana plumbaginifolia]
Length=292

 Score = 32.0 bits (71),  Expect = 0.67
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 0/37 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKI  115
            SGRS+G   V  S + +   A +++NG ++DG+ +++
Sbjct  125  SGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRV  161


 Score = 30.0 bits (66),  Expect = 2.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 0/37 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKI  115
            SGRS+G   V +S   +   A    NG+ LDG+ +++
Sbjct  245  SGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRV  281


>gi|115473531|ref|NP_001060364.1|  Os07g0631900 [Oryza sativa (japonica cultivar-group)]
 gi|22296371|dbj|BAC10140.1|  putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza 
sativa (japonica cultivar-group)]
 gi|113611900|dbj|BAF22278.1|  Os07g0631900 [Oryza sativa (japonica cultivar-group)]
Length=264

 Score = 32.0 bits (71),  Expect = 0.67
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 0/38 (0%)
 Frame = +2

Query  2    RSGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKI  115
            ++GRS+G   V  S   +A  A +++NG    G+P+++
Sbjct  116  QTGRSRGFGFVTMSTAEEAGAAVEQFNGYTFQGRPLRV  153


 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 0/39 (0%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEI  121
            SGRS+G   V +    +   A    +GV LDG+ +++ +
Sbjct  217  SGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTV  255


>gi|116059568|emb|CAL55275.1|  FOG: RRM domain (ISS) [Ostreococcus tauri]
Length=1094

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 0/43 (0%)
 Frame = +2

Query  5     SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTN  133
             +GRS+G   V  S  T+A     + NG  +DG+ +++ I  +N
Sbjct  1052  TGRSRGFGFVTMSNTTEADEVVAQLNGQDVDGRVLRVNIATSN  1094


>gi|92891584|gb|ABE90872.1|  RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]
Length=428

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
 Frame = +2

Query  5    SGRSKGTAEVVFSRRTDAAVAFKRYNGVQLDGKPMKIEIVGTNVATPVALPPATNGKFAN  184
            +GRSKG   V FS  ++   A    NGV    +PM+I           A P  T G   N
Sbjct  146  TGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRIS---------AATPKKTTGYQQN  196

Query  185  P  187
            P
Sbjct  197  P  197
Distribution of 109 Blast Hits on the Query Sequence
