Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168940545-16810-114767866455.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
Query= Contig159 Length=337
Score E Sequences producing significant alignments: (Bits) Value gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-bin... 81.3 4e-25 gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-bindi... 81.3 4e-25 gi|15219941|ref|NP_176347.1| LHCA3*1; chlorophyll binding [Ar... 81.3 4e-25 gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding pr 76.6 9e-24 gi|82080|pir||S04125 chlorophyll a/b-binding protein type III... 80.9 1e-22 gi|115813|sp|P27522|CB13_LYCES Chlorophyll a-b binding protei... 79.0 5e-22 gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding pro 83.6 1e-21 gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding pro 83.2 2e-21 gi|115444841|ref|NP_001046200.1| Os02g0197600 [Oryza sativa (... 73.9 2e-16 gi|49388158|dbj|BAD25286.1| chlorophyll a/b-binding protein t... 73.9 2e-16 gi|309673|gb|AAA84545.1| light harvesting protein 73.2 3e-16 gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding prote 61.2 4e-13 gi|49388157|dbj|BAD25285.1| unknown protein [Oryza sativa (ja... 61.6 8e-10 gi|63029295|gb|AAY27546.1| chloroplast light-harvesting compl... 37.4 8e-06 gi|115765|sp|P10708|CB12_LYCES Chlorophyll a-b binding protei... 42.0 6e-04 gi|445116|prf||1908421A light-harvesting complex IIa protein; 41.6 8e-04 gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein 41.2 0.001 gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza s 41.2 0.001 gi|30680697|ref|NP_850545.1| LHCB4.2; chlorophyll binding [Arabi 41.2 0.001 gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa (... 41.2 0.001 gi|15231990|ref|NP_187506.1| LHCB4.2 [Arabidopsis thaliana] >... 41.2 0.001 gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding pro... 40.8 0.001 gi|63029293|gb|AAY27545.1| chloroplast light-harvesting compl... 40.4 0.002 gi|1808692|emb|CAA71758.1| hypothetical protein [Sporobolus stap 40.0 0.002 gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa (... 40.0 0.002 gi|115766|sp|P13869|CB12_PETHY Chlorophyll a-b binding protei... 40.0 0.002 gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [C 39.7 0.003 gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b ... 39.7 0.003 gi|15233120|ref|NP_191706.1| LHCA2; chlorophyll binding [Arab... 39.3 0.004 gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsi... 39.3 0.004 gi|92871882|gb|ABE80774.1| Chlorophyll A-B binding protein [Medi 38.9 0.005 gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyl... 38.9 0.005 gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protei 38.9 0.005 gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna pro... 38.9 0.005 gi|27754356|gb|AAO22627.1| putative light-harvesting chloroph... 38.5 0.007 gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a ... 38.5 0.007 gi|15221956|ref|NP_173349.1| LHCA2*1; chlorophyll binding [Ar... 38.5 0.007 gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa (... 38.5 0.007 gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 38.5 0.007 gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b ... 34.7 0.009 gi|74272669|gb|ABA01130.1| chloroplast light harvesting compl... 38.1 0.009 gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum] 38.1 0.009 gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (... 37.4 0.016 gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding prot 36.6 0.027 gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding ... 35.8 0.046 gi|15081739|gb|AAK82524.1| AT5g01530/F7A7_50 [Arabidopsis thalia 35.8 0.046 gi|15241005|ref|NP_195773.1| chlorophyll binding [Arabidopsis... 35.8 0.046 gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding p 35.4 0.060 gi|261986|gb|AAB24552.1| photosystem I light-harvesting compl... 34.7 0.10 gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 34.7 0.10 gi|115770|sp|P12328|CB21_LEMGI Chlorophyll a-b binding protei... 34.7 0.10 gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b bindin... 33.9 0.18 gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding prot 33.9 0.18 gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B bi... 33.9 0.18 gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding ... 33.9 0.18 gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, ... 33.5 0.23 gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b ... 33.5 0.23 gi|108709620|gb|ABF97415.1| Chlorophyll a-b binding protein, ... 33.1 0.30 gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza 33.1 0.30 gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll... 33.1 0.30 gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nico 33.1 0.30 gi|9719392|gb|AAF97781.1| chlorophyll a/b-binding protein [Picea 33.1 0.30 gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza 33.1 0.30 gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Pan 33.1 0.30 gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa (... 33.1 0.30 gi|115806|sp|P14279|CB25_LYCES Chlorophyll a-b binding protei... 33.1 0.30 gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyl... 33.1 0.30 gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amara 33.1 0.30 gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b b... 33.1 0.30 gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I 33.1 0.30 gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyl... 33.1 0.30 gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta 33.1 0.30 gi|115803|sp|P14278|CB24_LYCES Chlorophyll a-b binding protei... 33.1 0.30 gi|115802|sp|P27494|CB23_TOBAC Chlorophyll a-b binding protei... 33.1 0.30 gi|227612|prf||1707316B chlorophyll a/b binding protein 2 33.1 0.30 gi|115811|sp|P12062|CB26_PETSP Chlorophyll a-b binding protei... 33.1 0.30 gi|115777|sp|P12332|CB21_SILPR Chlorophyll a-b binding protei... 33.1 0.30 gi|33772151|gb|AAQ54512.1| chlorophyll a/b-binding protein type 32.7 0.39 gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-... 32.7 0.39 gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b ... 32.7 0.39 gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-b... 32.7 0.39 gi|99600|pir||S22022 chlorophyll a/b-binding protein - upland co 32.7 0.39 gi|115799|sp|P15195|CB23_POLMU Chlorophyll a-b binding protei... 32.7 0.39 gi|6440899|dbj|BAA78594.1| hypothetical protein [Chlamydomonas s 32.7 0.39 gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-b... 32.7 0.39 gi|115832|sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein... 32.7 0.39 gi|60650129|dbj|BAD90930.1| chlorophyll a/b-binding protein [Adi 32.3 0.51 gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (... 32.3 0.51 gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa (... 32.3 0.51 gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (... 32.3 0.51 gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare 32.3 0.51 gi|115797|sp|P27520|CB23_PEA Chlorophyll a-b binding protein ... 32.3 0.51 gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll... 32.3 0.51 gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b b... 32.0 0.67 gi|22003726|gb|AAM88863.1|AF526508_1 A-B binding protein [Vicia 32.0 0.67 gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding prote 32.0 0.67 gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina] 32.0 0.67 gi|63029283|gb|AAY27540.1| chloroplast light-harvesting compl... 32.0 0.67 gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlor... 31.6 0.87 gi|67772801|gb|AAY81729.1| chloroplast putative light harvest... 31.6 0.87
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Jan 15, 2007 4:53 AM Number of letters in database: 101,054,579 Number of sequences in database: 283,349 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 283349 Number of Hits to DB: 177 Number of extensions: 5 Number of successful extensions: 0 Number of sequences better than 10: 0 Number of HSP's better than 10 without gapping: 0 Number of HSP's gapped: 0 Number of HSP's successfully gapped: 0 Length of query: 337 Length of database: 101054579 Length adjustment: 80 Effective length of query: 257 Effective length of database: 78386659 Effective search space: 2508373088 Effective search space used: 2508373088 T: 12 A: 40 X1: 16 (7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.4 bits) S2: 61 (28.1 bits)
