RID=1168940556-1468-129579618144.BLASTQ4, Contig160

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168940556-1468-129579618144.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig160
Length=340

Distribution of 11 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|42572781|ref|NP_974486.1|  RNA binding / structural constit...  46.6    3e-05 
gi|15229443|ref|NP_191908.1|  RNA binding / structural constit...  46.6    3e-05 
gi|7572940|emb|CAA62364.1|  L1 protein [Arabidopsis thaliana]      45.1    8e-05
gi|91806704|gb|ABE66079.1|  hypothetical protein At4g20095 [Arabi  31.6    0.87  
gi|7485816|pir||T05317  hypothetical protein F1C12.10 - Arabidops  31.6    0.87 
gi|108743106|emb|CAJ00559.1|  exopolyphosphatase [Physcomitrella   29.6    3.3   
gi|108743108|emb|CAJ00560.1|  exopolyphosphatase [Physcomitrella   29.6    3.3   
gi|115478837|ref|NP_001063012.1|  Os09g0368900 [Oryza sativa (...  28.9    5.6   
gi|49387676|dbj|BAD25922.1|  leucine zipper protein-like [Oryz...  28.9    5.6   
gi|115434964|ref|NP_001042240.1|  Os01g0185400 [Oryza sativa (...  28.5    7.4   
gi|55773802|dbj|BAD72340.1|  hypothetical protein [Oryza sativa (  28.1    9.6

Alignments

 

>gi|42572781|ref|NP_974486.1|  RNA binding / structural constituent of ribosome [Arabidopsis 
thaliana]
Length=291

 Score = 46.6 bits (109),  Expect = 3e-05
 Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
 Frame = +3

Query  27   MTTCXTPSSSLMLAYAASTVHGQDL--TPSLLSFKSNKPTFSLYP-LVLKTSKDRK  185
            M  C T  SSLMLAYAA++   QDL  TPSL SF S++P    +P L+L  S+DR+
Sbjct  1    MAACAT-HSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFPLLLLGGSRDRR  55


>gi|15229443|ref|NP_191908.1|  RNA binding / structural constituent of ribosome [Arabidopsis 
thaliana]
 gi|75311693|sp|Q9LY66|RK1_ARATH  50S ribosomal protein L1, chloroplast precursor (CL1)
 gi|7573332|emb|CAB87802.1|  chloroplast ribosomal L1-like protein [Arabidopsis thaliana]
 gi|15450737|gb|AAK96640.1|  AT3g63490/MAA21_120 [Arabidopsis thaliana]
 gi|16649119|gb|AAL24411.1|  chloroplast ribosomal L1-like protein [Arabidopsis thaliana]
 gi|22137008|gb|AAM91349.1|  At3g63490/MAA21_120 [Arabidopsis thaliana]
 gi|24899727|gb|AAN65078.1|  chloroplast ribosomal L1-like protein [Arabidopsis thaliana]
Length=346

 Score = 46.6 bits (109),  Expect = 3e-05
 Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
 Frame = +3

Query  27   MTTCXTPSSSLMLAYAASTVHGQDL--TPSLLSFKSNKPTFSLYP-LVLKTSKDRK  185
            M  C T  SSLMLAYAA++   QDL  TPSL SF S++P    +P L+L  S+DR+
Sbjct  1    MAACAT-HSSLMLAYAAASTRSQDLTPTPSLFSFASSRPNHLSFPLLLLGGSRDRR  55


>gi|7572940|emb|CAA62364.1|  L1 protein [Arabidopsis thaliana]
Length=346

 Score = 45.1 bits (105),  Expect = 8e-05
 Identities = 29/56 (51%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
 Frame = +3

Query  27   MTTCXTPSSSLMLAYAASTVHGQDL--TPSLLSFKSNKPTFSLYP-LVLKTSKDRK  185
            M  C T  SSLMLAYAA++   QDL  TPSL SF S++P     P L+L  S+DR+
Sbjct  1    MAACAT-HSSLMLAYAAASTRAQDLTPTPSLFSFASSRPNHLSVPLLLLGGSRDRR  55


>gi|91806704|gb|ABE66079.1|  hypothetical protein At4g20095 [Arabidopsis thaliana]
Length=201

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 0/30 (0%)
 Frame = +1

Query  73   PHLQYTGKTSLHLFSLSNPTSLPFLSTHSF  162
            P++   G+  LH ++L N T+L FL+ H+F
Sbjct  70   PNIILFGRVGLHCYNLQNGTNLQFLTVHNF  99


>gi|7485816|pir||T05317  hypothetical protein F1C12.10 - Arabidopsis thaliana
Length=292

 Score = 31.6 bits (70),  Expect = 0.87
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 0/30 (0%)
 Frame = +1

Query  73   PHLQYTGKTSLHLFSLSNPTSLPFLSTHSF  162
            P++   G+  LH ++L N T+L FL+ H+F
Sbjct  70   PNIILFGRVGLHCYNLQNGTNLQFLTVHNF  99


>gi|108743106|emb|CAJ00559.1|  exopolyphosphatase [Physcomitrella patens subsp. patens]
Length=706

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 0/37 (0%)
 Frame = +1

Query  88   TGKTSLHLFSLSNPTSLPFLSTHSFSRLPKTGNPASN  198
            TG   +   SLS+  S   +STH FSRL +TGN  S+
Sbjct  43   TGVQQICYNSLSSLRSFHGISTHRFSRLIETGNITSS  79


>gi|108743108|emb|CAJ00560.1|  exopolyphosphatase [Physcomitrella patens subsp. patens]
Length=721

 Score = 29.6 bits (65),  Expect = 3.3
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 0/37 (0%)
 Frame = +1

Query  88   TGKTSLHLFSLSNPTSLPFLSTHSFSRLPKTGNPASN  198
            TG   +   SLS+  S   +STH FSRL +TGN  S+
Sbjct  98   TGVQQICYNSLSSLRSFHGISTHRFSRLIETGNITSS  134


>gi|115478837|ref|NP_001063012.1|  Os09g0368900 [Oryza sativa (japonica cultivar-group)]
 gi|113631245|dbj|BAF24926.1|  Os09g0368900 [Oryza sativa (japonica cultivar-group)]
Length=686

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 0/47 (0%)
 Frame = +2

Query  59   DASVRRIYSTRARPHSISSLFQIQQAYLFSLPTRSQDFQRQEIQPQM  199
            DAS R++  TR     + S  +++   L+S+    +  + +E+QPQ+
Sbjct  439  DASARQVDKTRVIVKDLYSRLKVETEVLYSISKIIEKLRDEELQPQL  485


>gi|49387676|dbj|BAD25922.1|  leucine zipper protein-like [Oryza sativa (japonica cultivar-group)]
 gi|49388784|dbj|BAD25979.1|  leucine zipper protein-like [Oryza sativa (japonica cultivar-group)]
Length=735

 Score = 28.9 bits (63),  Expect = 5.6
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 0/47 (0%)
 Frame = +2

Query  59   DASVRRIYSTRARPHSISSLFQIQQAYLFSLPTRSQDFQRQEIQPQM  199
            DAS R++  TR     + S  +++   L+S+    +  + +E+QPQ+
Sbjct  439  DASARQVDKTRVIVKDLYSRLKVETEVLYSISKIIEKLRDEELQPQL  485


>gi|115434964|ref|NP_001042240.1|  Os01g0185400 [Oryza sativa (japonica cultivar-group)]
 gi|55295931|dbj|BAD67799.1|  unknown protein [Oryza sativa (japonica cultivar-group)]
 gi|113531771|dbj|BAF04154.1|  Os01g0185400 [Oryza sativa (japonica cultivar-group)]
Length=413

 Score = 28.5 bits (62),  Expect = 7.4
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +3

Query  78   STVHGQDLTPSLLSFKSNKPTFSLYPLVLKTSKDRKSSLKWANLCP  215
            ST HG +   SLLS   +KP+     L++  SKD K  L W  + P
Sbjct  131  STFHGHEKALSLLSVARHKPS-----LLVSCSKDSKVKL-WDTMAP  170


>gi|55773802|dbj|BAD72340.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=218

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query  115  SLSNPTSLPFLSTHSFSRLP-KTGNPASNGPIYVPRGIPSM  234
            S ++P   P    H   R+P +   PAS+ P+ +PR +PS+
Sbjct  23   SPTSPPHTPAWPRHGSFRVPSRHRRPASSAPLLLPRVVPSL  63

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.317    0.134    0.407 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 166
Number of extensions: 3
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 340
Length of database: 101054579
Length adjustment: 81
Effective length of query: 259
Effective length of database: 78103310
Effective search space: 2499305920
Effective search space used: 2499305920
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)