RID=1168940778-19130-112752967684.BLASTQ1, Contig164

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168940778-19130-112752967684.BLASTQ1 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig164
Length=300

Distribution of 12 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|18411155|ref|NP_565136.1|  unknown protein [Arabidopsis tha...  33.5    0.23  
gi|14596201|gb|AAK68828.1|  Unknown protein [Arabidopsis thaliana  33.5    0.23  
gi|18394938|ref|NP_564129.1|  unknown protein [Arabidopsis tha...  30.8    1.5   
gi|21553860|gb|AAM62953.1|  unknown [Arabidopsis thaliana]         30.8    1.5   
gi|90403741|gb|ABD93764.1|  RNA polymerase beta chain [Dicentra s  30.0    2.6  
gi|12323627|gb|AAG51783.1|AC079679_3  reverse transcriptase, p...  30.0    2.6  
gi|12323297|gb|AAG51629.1|AC012193_11  putative auxin response...  29.3    4.4  
gi|15810291|gb|AAL07033.1|  auxin response factor ARF17 [Arabidop  29.3    4.4   
gi|6573757|gb|AAF17677.1|AC009243_4  F28K19.6 [Arabidopsis thalia  29.3    4.4  
gi|18411720|ref|NP_565161.1|  ARF17; transcription factor [Ara...  29.3    4.4   
gi|90403785|gb|ABD93786.1|  RNA polymerase beta chain [Tradescant  28.1    9.7  
gi|38346043|emb|CAD39754.2|  OSJNBa0059D20.15 [Oryza sativa (japo  28.1    9.7

Alignments

 

>gi|18411155|ref|NP_565136.1|  unknown protein [Arabidopsis thaliana]
 gi|12323985|gb|AAG51956.1|AC015450_17  unknown protein; 83277-83927 [Arabidopsis thaliana]
 gi|21592540|gb|AAM64489.1|  unknown [Arabidopsis thaliana]
 gi|23197634|gb|AAN15344.1|  Unknown protein [Arabidopsis thaliana]
Length=216

 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +1

Query  145  GTCFSLNSRNGTV*ICGAPNCSRLFPLNGDLHKYNIPVLVSQV  273
            G C S+N RN  V    +   +++  +NGDL +Y++PVL SQV
Sbjct  2    GLCVSVN-RNEYV---SSSTTAKIVTINGDLREYDVPVLASQV  40


>gi|14596201|gb|AAK68828.1|  Unknown protein [Arabidopsis thaliana]
Length=216

 Score = 33.5 bits (75),  Expect = 0.23
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +1

Query  145  GTCFSLNSRNGTV*ICGAPNCSRLFPLNGDLHKYNIPVLVSQV  273
            G C S+N RN  V    +   +++  +NGDL +Y++PVL SQV
Sbjct  2    GLCVSVN-RNEYV---SSSTTAKIVTINGDLREYDVPVLASQV  40


>gi|18394938|ref|NP_564129.1|  unknown protein [Arabidopsis thaliana]
 gi|32815937|gb|AAP88353.1|  At1g21010 [Arabidopsis thaliana]
 gi|110743853|dbj|BAE99761.1|  hypothetical protein [Arabidopsis thaliana]
Length=210

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 0/21 (0%)
 Frame = +1

Query  211  RLFPLNGDLHKYNIPVLVSQV  273
            ++  +NGDL +YN+PV+ SQV
Sbjct  19   KIVTVNGDLREYNVPVIASQV  39


>gi|21553860|gb|AAM62953.1|  unknown [Arabidopsis thaliana]
Length=210

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 0/21 (0%)
 Frame = +1

Query  211  RLFPLNGDLHKYNIPVLVSQV  273
            ++  +NGDL +YN+PV+ SQV
Sbjct  19   KIVTVNGDLREYNVPVIASQV  39


>gi|90403741|gb|ABD93764.1|  RNA polymerase beta chain [Dicentra sp. Qiu 95026]
Length=849

 Score = 30.0 bits (66),  Expect = 2.6
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query  145  GTCFSLNSRNGTV*ICGAPNCSRLFPLNGDLHKYNIPVLVSQVPSXG  285
            GT  ++ S+N    I  + NCSR+ P NG   KYN  V+   + S G
Sbjct  465  GTIRTVLSQNKEYLILSSSNCSRMGPFNG--FKYNKNVIKESMKSQG  509


>gi|12323627|gb|AAG51783.1|AC079679_3  reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length=1142

 Score = 30.0 bits (66),  Expect = 2.6
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 0/21 (0%)
 Frame = +2

Query  200  PTAQGCFPSTAIFINITFLCW  262
            PTA G FPS +IF N+  L W
Sbjct  896  PTAPGIFPSNSIFTNLDHLFW  916


>gi|12323297|gb|AAG51629.1|AC012193_11  putative auxin response factor; 79762-82020 [Arabidopsis thaliana]
Length=596

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +2

Query  113  YQQPGNSFIHGEPASL*ILETALSESAAPPTAQGCFPSTAIFINITF  253
            Y QPG  F+ G+   +   ++ LS +AAP       PS ++F   TF
Sbjct  397  YPQPGGGFLSGDDGEILYPQSGLSSAAAPD------PSPSMFSYSTF  437


>gi|15810291|gb|AAL07033.1|  auxin response factor ARF17 [Arabidopsis thaliana]
Length=585

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +2

Query  113  YQQPGNSFIHGEPASL*ILETALSESAAPPTAQGCFPSTAIFINITF  253
            Y QPG  F+ G+   +   ++ LS +AAP       PS ++F   TF
Sbjct  397  YPQPGGGFLSGDDGEILYPQSGLSSAAAPD------PSPSMFSYSTF  437


>gi|6573757|gb|AAF17677.1|AC009243_4  F28K19.6 [Arabidopsis thaliana]
Length=652

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +2

Query  113  YQQPGNSFIHGEPASL*ILETALSESAAPPTAQGCFPSTAIFINITF  253
            Y QPG  F+ G+   +   ++ LS +AAP       PS ++F   TF
Sbjct  401  YPQPGGGFLSGDDGEILYPQSGLSSAAAPD------PSPSMFSYSTF  441


>gi|18411720|ref|NP_565161.1|  ARF17; transcription factor [Arabidopsis thaliana]
 gi|46576532|sp|Q84WU6|ARFQ_ARATH  Auxin response factor 17
 gi|27754249|gb|AAO22578.1|  auxin response factor ARF17 [Arabidopsis thaliana]
Length=585

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +2

Query  113  YQQPGNSFIHGEPASL*ILETALSESAAPPTAQGCFPSTAIFINITF  253
            Y QPG  F+ G+   +   ++ LS +AAP       PS ++F   TF
Sbjct  397  YPQPGGGFLSGDDGEILYPQSGLSSAAAPD------PSPSMFSYSTF  437


>gi|90403785|gb|ABD93786.1|  RNA polymerase beta chain [Tradescantia sp. Qiu 96059]
Length=833

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 0/34 (0%)
 Frame = +1

Query  145  GTCFSLNSRNGTV*ICGAPNCSRLFPLNGDLHKY  246
            GT  + N    ++ I  + NCSR+ P N +  KY
Sbjct  448  GTLLNRNKERQSLIILSSSNCSRIGPFNSNYSKY  481


>gi|38346043|emb|CAD39754.2|  OSJNBa0059D20.15 [Oryza sativa (japonica cultivar-group)]
Length=740

 Score = 28.1 bits (61),  Expect = 9.7
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query  187  FRQCRFENSKRSRFPMDEGVPRLLVALVN*AFAPSSCRXLARSTSLRSKKRKWKSISCRI  8
            F QC F ++  S+FP  E + + LV  +  A +P + + +      +  ++ W++++ R 
Sbjct  387  FLQCAFHDANPSQFPQLESIGQELVKKL--AGSPLAAQTVGNLLKFKLDEKHWETVNGRK  444

Query  7    L  5
            L
Sbjct  445  L  445

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 205
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 300
Length of database: 101054579
Length adjustment: 69
Effective length of query: 231
Effective length of database: 81503498
Effective search space: 2526608438
Effective search space used: 2526608438
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)