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BLASTX 2.2.15 [Oct-15-2006] 
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman 
(1997), "Gapped BLAST and PSI-BLAST: a new generation of 
protein database search programs", Nucleic Acids Res. 25:3389-3402.

RID: 1168941702-12439-206947581640.BLASTQ1


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
           4,458,890 sequences; 1,532,996,420 total letters

 
If you have any problems or questions with the results of this search 
please refer to the BLAST FAQs
Taxonomy reports

Query=  Contig182
Length=410

Distribution of 38 Blast Hits on the Query Sequence


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|92885944|gb|ABE87988.1|  ribosomal protein S3 [Medicago trunca   112    3e-25
gi|115473289|ref|NP_001060243.1|  Os07g0608500 [Oryza sativa (...   112    4e-25 Gene info
gi|82623397|gb|ABB87113.1|  unknown [Solanum tuberosum]             110    1e-24
gi|15225107|ref|NP_180719.1|  structural constituent of riboso...   110    2e-24 UniGene infoGene info
gi|15232352|ref|NP_190955.1|  nucleic acid binding / structura...   110    2e-24 UniGene infoGene info
gi|108709466|gb|ABF97261.1|  40S ribosomal protein S3, putativ...   108    4e-24
gi|115453877|ref|NP_001050539.1|  Os03g0577000 [Oryza sativa (...   108    4e-24 Gene info
gi|95116517|gb|ABF56171.1|  40S ribosomal protein S3 [Theobroma c   108    6e-24
gi|15238533|ref|NP_198403.1|  structural constituent of riboso...   108    6e-24 UniGene infoGene info
gi|74272607|gb|ABA01099.1|  40S ribosomal protein S3 [Chlamydomon   105    4e-23
gi|22204124|gb|AAM92710.1|  putative 40S ribosomal protein S3 [Tr   105    6e-23 UniGene infoGene info
gi|83283961|gb|ABC01888.1|  40S ribosomal protein-like protein [S   102    4e-22 UniGene info
gi|116057117|emb|CAL51544.1|  40S ribosomal protein S3 (ISS) [Ost  89.0    5e-18
gi|116057116|emb|CAL51543.1|  40S ribosomal protein S3 (ISS) [Ost  57.0    2e-08
gi|22759729|dbj|BAC10913.1|  putative ribosomal protein S3 [Zinni  57.0    2e-08
gi|32400841|gb|AAP80652.1|AF479033_1  40S ribosomal protein [Trit  46.6    3e-05 UniGene info
gi|3063697|emb|CAA18588.1|  putative myb-protein (partial) [Arabi  32.0    0.68 
gi|8574644|gb|AAF77638.1|AF189212_1  putative c-myb-like trans...  32.0    0.68 
gi|42573243|ref|NP_974718.1|  PC-MYB1; DNA binding / transcrip...  32.0    0.68  UniGene infoGene info
gi|15233911|ref|NP_194999.1|  PC-MYB1; DNA binding / transcrip...  32.0    0.68  UniGene infoGene info
gi|92872805|gb|ABE81360.1|  Tyrosine protein kinase, active site   30.8    1.5  
gi|116058440|emb|CAL53629.1|  P-type ATPase (ISS) [Ostreococcus t  29.6    3.4  
gi|115480832|ref|NP_001064009.1|  Os10g0100500 [Oryza sativa (...  29.3    4.4   Gene info
gi|18481962|gb|AAL73560.1|AC079632_4  Putative protein kinase ...  29.3    4.4  
gi|15219627|ref|NP_176806.1|  unknown protein [Arabidopsis tha...  28.5    7.5   UniGene infoGene info
gi|54291636|dbj|BAD62429.1|  resistance protein-like [Oryza sa...  28.1    9.8  
gi|121364|sp|P11600|GLNA_DUNSA  Glutamine synthetase (Glutamat...  28.1    9.8
Alignments

>gi|92885944|gb|ABE87988.1|  ribosomal protein S3 [Medicago truncatula]
Length=239

 Score =  112 bits (281),  Expect = 3e-25
 Identities = 73/88 (82%), Positives = 75/88 (85%), Gaps = 1/88 (1%)
 Frame = +2

Query  53   QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYKllgglav  232
            Q VLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQA+SLRYKLLGGLAV
Sbjct  56   QAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAV  115

Query  233  rrallWCSQDLSWRVGPKGCEVIVSGKL  316
            RRA     +      G KGCEVIVSGKL
Sbjct  116  RRACYGVLR-FVMESGAKGCEVIVSGKL  142


 Score = 67.4 bits (163),  Expect = 1e-11
 Identities = 40/71 (56%), Positives = 45/71 (63%), Gaps = 6/71 (8%)
 Frame = +3

Query  213  SLEALLFGGL-----CYGVLKIYHGEWGQRDVRSL*VESFRAQRAKSMKYKDGYMISSGH  377
            SL   L GGL     CYGVL+    E G +    +     RAQRAKSMK+KDGYMISSG 
Sbjct  104  SLRYKLLGGLAVRRACYGVLRFVM-ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQ  162

Query  378  PVNEYIDSAVR  410
            PV +YIDSAVR
Sbjct  163  PVKDYIDSAVR  173


>gi|115473289|ref|NP_001060243.1| Gene info Os07g0608500 [Oryza sativa (japonica cultivar-group)]
 gi|14192875|gb|AAK55780.1|AC079038_14  Putative 40S ribosomal protein; contains C-terminal domain [Oryza 
sativa]
 gi|34394183|dbj|BAC84635.1| Gene info putative 40S ribosomal protein [Oryza sativa (japonica cultivar-group)]
 gi|50509862|dbj|BAD32034.1| Gene info putative 40S ribosomal protein [Oryza sativa (japonica cultivar-group)]
 gi|113611779|dbj|BAF22157.1| Gene info Os07g0608500 [Oryza sativa (japonica cultivar-group)]
Length=233

 Score =  112 bits (280),  Expect = 4e-25
 Identities = 72/88 (81%), Positives = 74/88 (84%), Gaps = 1/88 (1%)
 Frame = +2

Query  53   QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYKllgglav  232
            QNVLGEKGRRIRELTSVVQKRF FPEN VELYAEKVNNRGLCAIAQA+SLRYKLLGGLAV
Sbjct  58   QNVLGEKGRRIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAV  117

Query  233  rrallWCSQDLSWRVGPKGCEVIVSGKL  316
            RRA     +      G KGCEVIVSGKL
Sbjct  118  RRACYGVLR-FVMESGAKGCEVIVSGKL  144


 Score = 68.6 bits (166),  Expect = 7e-12
 Identities = 41/71 (57%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
 Frame = +3

Query  213  SLEALLFGGL-----CYGVLKIYHGEWGQRDVRSL*VESFRAQRAKSMKYKDGYMISSGH  377
            SL   L GGL     CYGVL+    E G +    +     RAQRAKSMK+KDGYMISSG+
Sbjct  106  SLRYKLLGGLAVRRACYGVLRFVM-ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGY  164

Query  378  PVNEYIDSAVR  410
            PVN YIDSAVR
Sbjct  165  PVNLYIDSAVR  175


>gi|82623397|gb|ABB87113.1|  unknown [Solanum tuberosum]
Length=238

 Score =  110 bits (276),  Expect = 1e-24
 Identities = 72/88 (81%), Positives = 74/88 (84%), Gaps = 1/88 (1%)
 Frame = +2

Query  53   QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYKllgglav  232
            QNVLGEKGRRIRELTSVVQKRF F ENSVELYAEKVNNRGLCAIAQA+SLRYKLLGGLAV
Sbjct  57   QNVLGEKGRRIRELTSVVQKRFNFKENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAV  116

Query  233  rrallWCSQDLSWRVGPKGCEVIVSGKL  316
            RRA     +      G KGCEVIVSGKL
Sbjct  117  RRACYGVLR-FVMESGAKGCEVIVSGKL  143


 Score = 67.4 bits (163),  Expect = 1e-11
 Identities = 40/71 (56%), Positives = 45/71 (63%), Gaps = 6/71 (8%)
 Frame = +3

Query  213  SLEALLFGGL-----CYGVLKIYHGEWGQRDVRSL*VESFRAQRAKSMKYKDGYMISSGH  377
            SL   L GGL     CYGVL+    E G +    +     RAQRAKSMK+KDGYMISSG 
Sbjct  105  SLRYKLLGGLAVRRACYGVLRFVM-ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQ  163

Query  378  PVNEYIDSAVR  410
            PV EYID+AVR
Sbjct  164  PVKEYIDAAVR  174


>gi|15225107|ref|NP_180719.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|75206146|sp|Q9SIP7|RS31_ARATH Gene info 40S ribosomal protein S3-1
 gi|14190419|gb|AAK55690.1|AF378887_1 UniGene infoGene info At2g31610/T9H9.13 [Arabidopsis thaliana]
 gi|4582468|gb|AAD24852.1| Gene info 40S ribosomal protein; contains C-terminal domain [Arabidopsis 
thaliana]
 gi|15028253|gb|AAK76715.1| UniGene infoGene info putative 40S ribosomal protein; contains C-terminal domain [Arabidopsis 
thaliana]
 gi|15450571|gb|AAK96463.1| UniGene infoGene info At2g31610/T9H9.13 [Arabidopsis thaliana]
 gi|15451084|gb|AAK96813.1| UniGene infoGene info 40S ribosomal protein [Arabidopsis thaliana]
 gi|20148377|gb|AAM10079.1| UniGene infoGene info 40S ribosomal protein; contains C-terminal domain [Arabidopsis 
thaliana]
 gi|20258907|gb|AAM14147.1| UniGene infoGene info putative 40S ribosomal protein [Arabidopsis thaliana]
Length=250

 Score =  110 bits (274),  Expect = 2e-24
 Identities = 71/88 (80%), Positives = 75/88 (85%), Gaps = 1/88 (1%)
 Frame = +2

Query  53   QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYKllgglav  232
            QNVLGEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQA+SLRYKLLGGLAV
Sbjct  56   QNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAV  115

Query  233  rrallWCSQDLSWRVGPKGCEVIVSGKL  316
            RRA     +      G KGCEVIVSGKL
Sbjct  116  RRACYGVLR-FVMESGAKGCEVIVSGKL  142


 Score = 63.2 bits (152),  Expect = 3e-10
 Identities = 37/71 (52%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
 Frame = +3

Query  213  SLEALLFGGL-----CYGVLKIYHGEWGQRDVRSL*VESFRAQRAKSMKYKDGYMISSGH  377
            SL   L GGL     CYGVL+    E G +    +     RA RAKSMK+KDGYM+SSG 
Sbjct  104  SLRYKLLGGLAVRRACYGVLRFVM-ESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQ  162

Query  378  PVNEYIDSAVR  410
            P  EYID+AVR
Sbjct  163  PTKEYIDAAVR  173


>gi|15232352|ref|NP_190955.1| UniGene infoGene info nucleic acid binding / structural constituent of ribosome [Arabidopsis 
thaliana]
 gi|75183568|sp|Q9M339|RS32_ARATH Gene info 40S ribosomal protein S3-2
 gi|16226458|gb|AAL16173.1|AF428405_1 UniGene infoGene info AT3g53870/F5K20_170 [Arabidopsis thaliana]
 gi|7630007|emb|CAB88349.1| Gene info ribosomal protein S3a homolog [Arabidopsis thaliana]
 gi|14334698|gb|AAK59527.1| UniGene infoGene info putative ribosomal protein S3a homolog [Arabidopsis thaliana]
 gi|16323404|gb|AAL15196.1| UniGene infoGene info putative ribosomal protein S3a homolog [Arabidopsis thaliana]
 gi|21618068|gb|AAM67118.1| UniGene infoGene info ribosomal protein S3a-like protein [Arabidopsis thaliana]
Length=249

 Score =  110 bits (274),  Expect = 2e-24
 Identities = 71/88 (80%), Positives = 75/88 (85%), Gaps = 1/88 (1%)
 Frame = +2

Query  53   QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYKllgglav  232
            QNVLGEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQA+SLRYKLLGGLAV
Sbjct  56   QNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAV  115

Query  233  rrallWCSQDLSWRVGPKGCEVIVSGKL  316
            RRA     +      G KGCEVIVSGKL
Sbjct  116  RRACYGVLR-FVMESGAKGCEVIVSGKL  142


 Score = 64.3 bits (155),  Expect = 1e-10
 Identities = 38/71 (53%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
 Frame = +3

Query  213  SLEALLFGGL-----CYGVLKIYHGEWGQRDVRSL*VESFRAQRAKSMKYKDGYMISSGH  377
            SL   L GGL     CYGVL+    E G +    +     RA RAKSMK+KDGYM+SSG 
Sbjct  104  SLRYKLLGGLAVRRACYGVLRFVM-ESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQ  162

Query  378  PVNEYIDSAVR  410
            P  EYIDSAVR
Sbjct  163  PTKEYIDSAVR  173


>gi|108709466|gb|ABF97261.1|  40S ribosomal protein S3, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
Length=205

 Score =  108 bits (271),  Expect = 4e-24
 Identities = 71/88 (80%), Positives = 73/88 (82%), Gaps = 1/88 (1%)
 Frame = +2

Query  53   QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYKllgglav  232
            QNVLGEKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQA+SLRYKLLGGLAV
Sbjct  33   QNVLGEKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAV  92

Query  233  rrallWCSQDLSWRVGPKGCEVIVSGKL  316
            RRA     +      G KGCEVIVSGKL
Sbjct  93   RRACYGVLR-FVMESGAKGCEVIVSGKL  119


 Score = 70.9 bits (172),  Expect = 1e-12
 Identities = 42/71 (59%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
 Frame = +3

Query  213  SLEALLFGGL-----CYGVLKIYHGEWGQRDVRSL*VESFRAQRAKSMKYKDGYMISSGH  377
            SL   L GGL     CYGVL+    E G +    +     RAQRAKSMK+KDGYMISSG 
Sbjct  81   SLRYKLLGGLAVRRACYGVLRFVM-ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQ  139

Query  378  PVNEYIDSAVR  410
            PVNEYIDSAVR
Sbjct  140  PVNEYIDSAVR  150


>gi|115453877|ref|NP_001050539.1| Gene info Os03g0577000 [Oryza sativa (japonica cultivar-group)]
 gi|38093738|gb|AAR10854.1| Gene info putative ribosomal protein [Oryza sativa (japonica cultivar-group)]
 gi|108709465|gb|ABF97260.1| Gene info 40S ribosomal protein S3, putative, expressed [Oryza sativa (japonica 
cultivar-group)]
 gi|113549010|dbj|BAF12453.1| Gene info Os03g0577000 [Oryza sativa (japonica cultivar-group)]
Length=228

 Score =  108 bits (271),  Expect = 4e-24
 Identities = 71/88 (80%), Positives = 73/88 (82%), Gaps = 1/88 (1%)
 Frame = +2

Query  53   QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYKllgglav  232
            QNVLGEKGRRIRELTSVVQKRF FPEN VELYAEKV NRGLCAIAQA+SLRYKLLGGLAV
Sbjct  56   QNVLGEKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAV  115

Query  233  rrallWCSQDLSWRVGPKGCEVIVSGKL  316
            RRA     +      G KGCEVIVSGKL
Sbjct  116  RRACYGVLR-FVMESGAKGCEVIVSGKL  142


 Score = 70.9 bits (172),  Expect = 1e-12
 Identities = 42/71 (59%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
 Frame = +3

Query  213  SLEALLFGGL-----CYGVLKIYHGEWGQRDVRSL*VESFRAQRAKSMKYKDGYMISSGH  377
            SL   L GGL     CYGVL+    E G +    +     RAQRAKSMK+KDGYMISSG 
Sbjct  104  SLRYKLLGGLAVRRACYGVLRFVM-ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQ  162

Query  378  PVNEYIDSAVR  410
            PVNEYIDSAVR
Sbjct  163  PVNEYIDSAVR  173


>gi|95116517|gb|ABF56171.1|  40S ribosomal protein S3 [Theobroma cacao]
Length=86

 Score =  108 bits (270),  Expect = 6e-24
 Identities = 70/86 (81%), Positives = 74/86 (86%), Gaps = 1/86 (1%)
 Frame = +2

Query  59   VLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYKllgglavrr  238
            VLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQA+SLRYKLLGGLAVRR
Sbjct  1    VLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRR  60

Query  239  allWCSQDLSWRVGPKGCEVIVSGKL  316
            A     + +    G KGCEV+VSG L
Sbjct  61   ACYGVLRFI-MESGAKGCEVMVSGXL  85


>gi|15238533|ref|NP_198403.1| UniGene infoGene info structural constituent of ribosome [Arabidopsis thaliana]
 gi|75170994|sp|Q9FJA6|RS33_ARATH Gene info 40S ribosomal protein S3-3
 gi|9758155|dbj|BAB08712.1| Gene info 40S ribosomal protein S3 [Arabidopsis thaliana]
 gi|16604318|gb|AAL24165.1| UniGene infoGene info AT5g35530/MOK9_14 [Arabidopsis thaliana]
 gi|20466075|gb|AAM19959.1| UniGene infoGene info AT5g35530/MOK9_14 [Arabidopsis thaliana]
Length=248

 Score =  108 bits (270),  Expect = 6e-24
 Identities = 70/88 (79%), Positives = 75/88 (85%), Gaps = 1/88 (1%)
 Frame = +2

Query  53   QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYKllgglav  232
            QNVLGEKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQA+SLRYKLLGGLAV
Sbjct  56   QNVLGEKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAV  115

Query  233  rrallWCSQDLSWRVGPKGCEVIVSGKL  316
            RRA     +      G KGCEVIVSGKL
Sbjct  116  RRACYGVLR-FVMESGAKGCEVIVSGKL  142


 Score = 63.2 bits (152),  Expect = 3e-10
 Identities = 37/71 (52%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
 Frame = +3

Query  213  SLEALLFGGL-----CYGVLKIYHGEWGQRDVRSL*VESFRAQRAKSMKYKDGYMISSGH  377
            SL   L GGL     CYGVL+    E G +    +     RA RAKSMK+KDGYM+SSG 
Sbjct  104  SLRYKLLGGLAVRRACYGVLRFVM-ESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQ  162

Query  378  PVNEYIDSAVR  410
            P  EYID+AVR
Sbjct  163  PTKEYIDAAVR  173


>gi|74272607|gb|ABA01099.1|  40S ribosomal protein S3 [Chlamydomonas incerta]
Length=230

 Score =  105 bits (263),  Expect = 4e-23
 Identities = 69/88 (78%), Positives = 74/88 (84%), Gaps = 1/88 (1%)
 Frame = +2

Query  53   QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYKllgglav  232
            QNVLGEKGRRIRELTSVVQKRF FP +SVELYAEKV++RGLCAIAQA+SLRYKLLGGLAV
Sbjct  56   QNVLGEKGRRIRELTSVVQKRFNFPPDSVELYAEKVSDRGLCAIAQAESLRYKLLGGLAV  115

Query  233  rrallWCSQDLSWRVGPKGCEVIVSGKL  316
            RRA     +      G KGCEVIVSGKL
Sbjct  116  RRACYGVLR-FVMESGAKGCEVIVSGKL  142


 Score = 63.2 bits (152),  Expect = 3e-10
 Identities = 37/71 (52%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
 Frame = +3

Query  213  SLEALLFGGL-----CYGVLKIYHGEWGQRDVRSL*VESFRAQRAKSMKYKDGYMISSGH  377
            SL   L GGL     CYGVL+    E G +    +     RA RAKSMK+KDGYM+SSGH
Sbjct  104  SLRYKLLGGLAVRRACYGVLRFVM-ESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGH  162

Query  378  PVNEYIDSAVR  410
            P   YID AVR
Sbjct  163  PARVYIDGAVR  173


>gi|22204124|gb|AAM92710.1| UniGene infoGene info putative 40S ribosomal protein S3 [Triticum aestivum]
Length=227

 Score =  105 bits (261),  Expect = 6e-23
 Identities = 70/88 (79%), Positives = 72/88 (81%), Gaps = 1/88 (1%)
 Frame = +2

Query  53   QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYKllgglav  232
            QNVLGEKGRRIRELTSVVQKRF F EN VELYAEKV NRGLCAIAQA+SLRYKLLGGLAV
Sbjct  56   QNVLGEKGRRIRELTSVVQKRFNFLENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAV  115

Query  233  rrallWCSQDLSWRVGPKGCEVIVSGKL  316
            RRA     +      G KGCEVIVSGKL
Sbjct  116  RRACYGVLR-FVMESGAKGCEVIVSGKL  142


 Score = 69.7 bits (169),  Expect = 3e-12
 Identities = 41/71 (57%), Positives = 46/71 (64%), Gaps = 6/71 (8%)
 Frame = +3

Query  213  SLEALLFGGL-----CYGVLKIYHGEWGQRDVRSL*VESFRAQRAKSMKYKDGYMISSGH  377
            SL   L GGL     CYGVL+    E G +    +     RAQRAKSMK+KDGYMISSG 
Sbjct  104  SLRYKLLGGLAVRRACYGVLRFVM-ESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQ  162

Query  378  PVNEYIDSAVR  410
            PVNEYID+AVR
Sbjct  163  PVNEYIDAAVR  173


>gi|83283961|gb|ABC01888.1| UniGene info 40S ribosomal protein-like protein [Solanum tuberosum]
Length=240

 Score =  102 bits (254),  Expect = 4e-22
 Identities = 69/89 (77%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
 Frame = +2

Query  53   QNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYKllgglav  232
            QNVLGEKGRRIR LTSVVQKRF F ENSVELYAEKVNNRGLCAIAQA+SLRYKLLGGLAV
Sbjct  57   QNVLGEKGRRIRSLTSVVQKRFNFKENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAV  116

Query  233  rrallWCSQDLSWRVGPKGCEV-IVSGKL  316
            RRA     + +     P GCEV  VSGKL
Sbjct  117  RRACYGVLRFVMESGTPTGCEVDSVSGKL  145


 Score = 56.2 bits (134),  Expect = 3e-08
 Identities = 38/73 (52%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
 Frame = +3

Query  213  SLEALLFGGL-----CYGVLKIY--HGEWGQRDVRSL*VESFRAQRAKSMKYKDGYMISS  371
            SL   L GGL     CYGVL+     G     +V S+     RAQRAKSMK  DGYMISS
Sbjct  105  SLRYKLLGGLAVRRACYGVLRFVMESGTPTGCEVDSV-SGKLRAQRAKSMKSTDGYMISS  163

Query  372  GHPVNEYIDSAVR  410
            G PV++Y+D+AVR
Sbjct  164  GLPVSDYVDAAVR  176


>gi|116057117|emb|CAL51544.1|  40S ribosomal protein S3 (ISS) [Ostreococcus tauri]
Length=120

 Score = 89.0 bits (219),  Expect = 5e-18
 Identities = 43/52 (82%), Positives = 48/52 (92%), Gaps = 0/52 (0%)
 Frame = +2

Query  56   NVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAKSLRYK  211
            NVLGEKGRRIRELT++VQ+RF F E +VELYAEKVNNRGLCAIAQ +SLRYK
Sbjct  57   NVLGEKGRRIRELTTLVQRRFGFAEGTVELYAEKVNNRGLCAIAQCESLRYK  108


>gi|116057116|emb|CAL51543.1|  40S ribosomal protein S3 (ISS) [Ostreococcus tauri]
Length=145

 Score = 57.0 bits (136),  Expect = 2e-08
 Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
 Frame = +3

Query  243  CYGVLKIYHGEWGQRDVRSL*VESFRAQRAKSMKYKDGYMISSGHPVNEYIDSAVR  410
            CYGVL+ Y  E G +    +     R QRAK+MK+KDGYMISSG+PV +YI S  R
Sbjct  34   CYGVLR-YIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTR  88


>gi|22759729|dbj|BAC10913.1|  putative ribosomal protein S3 [Zinnia elegans]
Length=143

 Score = 57.0 bits (136),  Expect = 2e-08
 Identities = 26/30 (86%), Positives = 28/30 (93%), Gaps = 0/30 (0%)
 Frame = +3

Query  321  AQRAKSMKYKDGYMISSGHPVNEYIDSAVR  410
            AQRAKSMK+KDGYM+SSG PV EYIDSAVR
Sbjct  1    AQRAKSMKFKDGYMVSSGQPVKEYIDSAVR  30


>gi|32400841|gb|AAP80652.1|AF479033_1 UniGene info 40S ribosomal protein [Triticum aestivum]
Length=79

 Score = 46.6 bits (109),  Expect = 3e-05
 Identities = 20/24 (83%), Positives = 23/24 (95%), Gaps = 0/24 (0%)
 Frame = +3

Query  339  MKYKDGYMISSGHPVNEYIDSAVR  410
            +K+KDGYMISSG PVNEYID+AVR
Sbjct  2    VKFKDGYMISSGQPVNEYIDAAVR  25


>gi|3063697|emb|CAA18588.1|  putative myb-protein (partial) [Arabidopsis thaliana]
Length=715

 Score = 32.0 bits (71),  Expect = 0.68
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
 Frame = +1

Query  124  SREQCRTLC*EG*QQGSLC--------HCSGKVPALQAPWRPCCSEGFA  246
            S EQ R +      +GSLC        H +GKVPAL  PW P  SEG A
Sbjct  349  SGEQGRNMVDPQNGKGSLCSQAAETHAHETGKVPAL--PWHPSSSEGLA  395


>gi|8574644|gb|AAF77638.1|AF189212_1  putative c-myb-like transcription factor [Arabidopsis thaliana]
 gi|8745319|gb|AAF78886.1|AF189784_1 UniGene info putative c-myb-like transcription factor [Arabidopsis thaliana]
Length=776

 Score = 32.0 bits (71),  Expect = 0.68
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
 Frame = +1

Query  124  SREQCRTLC*EG*QQGSLC--------HCSGKVPALQAPWRPCCSEGFA  246
            S EQ R +      +GSLC        H +GKVPAL  PW P  SEG A
Sbjct  410  SGEQGRNMVDPQNGKGSLCSQAAETHAHETGKVPAL--PWHPSSSEGLA  456


>gi|42573243|ref|NP_974718.1| UniGene infoGene info PC-MYB1; DNA binding / transcription factor [Arabidopsis thaliana]
Length=995

 Score = 32.0 bits (71),  Expect = 0.68
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
 Frame = +1

Query  124  SREQCRTLC*EG*QQGSLC--------HCSGKVPALQAPWRPCCSEGFA  246
            S EQ R +      +GSLC        H +GKVPAL  PW P  SEG A
Sbjct  410  SGEQGRNMVDPQNGKGSLCSQAAETHAHETGKVPAL--PWHPSSSEGLA  456


>gi|15233911|ref|NP_194999.1| UniGene infoGene info PC-MYB1; DNA binding / transcription factor [Arabidopsis thaliana]
 gi|75336831|sp|Q9S7G7|MB3R1_ARATH Gene info Myb-related protein 3R-1 (Plant c-MYB-like protein 1) (Protein 
PC-MYB1) (PC-MYB1)
 gi|5678827|gb|AAD46772.1|AF151646_1 UniGene infoGene info PC-MYB1 [Arabidopsis thaliana]
 gi|5915721|gb|AAD53110.2|AF176005_1 UniGene infoGene info putative c-myb-like transcription factor [Arabidopsis thaliana]
 gi|8574642|gb|AAF77637.1|AF188677_1 Gene info putative c-myb-like transcription factor [Arabidopsis thaliana]
 gi|7270220|emb|CAB79990.1| Gene info putative myb-protein [Arabidopsis thaliana]
Length=776

 Score = 32.0 bits (71),  Expect = 0.68
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
 Frame = +1

Query  124  SREQCRTLC*EG*QQGSLC--------HCSGKVPALQAPWRPCCSEGFA  246
            S EQ R +      +GSLC        H +GKVPAL  PW P  SEG A
Sbjct  410  SGEQGRNMVDPQNGKGSLCSQAAETHAHETGKVPAL--PWHPSSSEGLA  456


>gi|92872805|gb|ABE81360.1|  Tyrosine protein kinase, active site [Medicago truncatula]
Length=868

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 0/44 (0%)
 Frame = -2

Query  184  NGTKTPVVNLLSIEFYTVLWKLEPFLNNRSQLSNPSSLLTENIL  53
            N  K P+ N +   + T++W  +P++NNRS   N   ++   IL
Sbjct  467  NHLKGPLPNCIHNGYNTIIWNDDPYINNRSNNINYDVVIVLPIL  510


>gi|116058440|emb|CAL53629.1|  P-type ATPase (ISS) [Ostreococcus tauri]
Length=1258

 Score = 29.6 bits (65),  Expect = 3.4
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = +3

Query  111  NGSSFQRTV*NSMLRRLTTGVFVPLLRQS--PCVTSSLEALLFGGLCYGVLKIYHGEWGQ  284
            NG+SF++       R L  G  V ++R    PC    L++ L    CY   K   GE   
Sbjct  136  NGTSFEKCE----WRELQAGNIVRVVRDQFFPCDLIMLDSSLEENSCYVETKNLDGETNL  191

Query  285  RDVRSL*VESFRAQRAKSMK  344
            +  RS+ VE  + +R   +K
Sbjct  192  KTKRSVDVEGLKFEREAFVK  211


>gi|115480832|ref|NP_001064009.1| Gene info Os10g0100500 [Oryza sativa (japonica cultivar-group)]
 gi|110288512|gb|ABB46563.2| Gene info U-box domain containing protein, expressed [Oryza sativa (japonica 
cultivar-group)]
 gi|113638618|dbj|BAF25923.1| Gene info Os10g0100500 [Oryza sativa (japonica cultivar-group)]
Length=811

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query  296  VIVSGKLPCSAC*VYEV--QGWLHDLLWSSC  382
            V + G  P + C VYE    G LHD LWS C
Sbjct  549  VTLIGACPDALCLVYEYVPNGSLHDRLWSKC  579


>gi|18481962|gb|AAL73560.1|AC079632_4  Putative protein kinase [Oryza sativa (japonica cultivar-group)]
 gi|19920207|gb|AAM08639.1|AC108883_12 Gene info Putative protein kinase [Oryza sativa]
Length=763

 Score = 29.3 bits (64),  Expect = 4.4
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query  296  VIVSGKLPCSAC*VYEV--QGWLHDLLWSSC  382
            V + G  P + C VYE    G LHD LWS C
Sbjct  537  VTLIGACPDALCLVYEYVPNGSLHDRLWSKC  567


>gi|15219627|ref|NP_176806.1| UniGene infoGene info unknown protein [Arabidopsis thaliana]
 gi|12324398|gb|AAG52165.1|AC020665_10 Gene info hypothetical protein; 30261-28688 [Arabidopsis thaliana]
Length=457

 Score = 28.5 bits (62),  Expect = 7.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query  163  VNLLSIEFYTVLWKLEPFLNNRSQLSNPSSLLTENILSSSGPNDDLSTPR  14
            ++LL +EFY   W++ PF        N  SL+ E+   +      LS PR
Sbjct  341  ISLLRVEFYQDRWEISPFF--LESCPNVKSLVVESDYYTKKRTSILSRPR  388


>gi|54291636|dbj|BAD62429.1|  resistance protein-like [Oryza sativa (japonica cultivar-group)]
Length=1218

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
 Frame = -2

Query  175  KTPVVNLLSIEFYTVLWKLEPFLNNRSQLSNPSSLLTENILSSSGPN  35
            KTP + LL  ++  +LW  E FL      SNP    T    +SS  N
Sbjct  345  KTPTIKLLDTQYQAILW--EVFLT-----SNPEEATTAASATSSSTN  384


>gi|121364|sp|P11600|GLNA_DUNSA  Glutamine synthetase (Glutamate--ammonia ligase)
 gi|1360726|emb|CAA33353.1|  unnamed protein product [Dunaliella salina]
Length=234

 Score = 28.1 bits (61),  Expect = 9.8
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 0/28 (0%)
 Frame = +2

Query  260  DLSWRVGPKGCEVIVSGKLPCSAC*VYE  343
            D SW V  +GC + V   +P   C  YE
Sbjct  184  DFSWGVANRGCSIRVGRMVPVEKCGYYE  211







  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 305
Number of extensions: 12
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 410
Length of database: 101054579
Length adjustment: 101
Effective length of query: 309
Effective length of database: 72436330
Effective search space: 2535271550
Effective search space used: 2535271550
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)