RID=1168941720-24383-87830375569.BLASTQ4, Contig183

BLASTX 2.2.15 [Oct-15-2006]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1168941720-24383-87830375569.BLASTQ4 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 4,458,890 sequences; 1,532,996,420 total letters

If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports

Query=  Contig183
Length=397

Distribution of 25 Blast Hits on the Query Sequence

                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gi|15222757|ref|NP_175963.1|  unknown protein [Arabidopsis tha...   105    1e-30 
gi|52001191|gb|AAU21476.1|  chloroplast photosystem I reaction ce   109    1e-25
gi|131194|sp|P12357|PSAG_SPIOL  Photosystem I reaction center ...   107    1e-23
gi|115479799|ref|NP_001063493.1|  Os09g0481200 [Oryza sativa (...   102    5e-22 
gi|86438618|emb|CAJ26374.1|  photosystem 1 subunit 5 [Brachypodiu  99.8    3e-21
gi|86439712|emb|CAJ75642.1|  photosystem 1 subunit 5 [Triticum ae  99.4    3e-21
gi|131192|sp|Q00327|PSAG_HORVU  Photosystem I reaction center ...  98.2    8e-21
gi|131193|sp|P20120|PSAG_PEA  Photosystem I reaction center su...  64.3    1e-10
gi|116057633|emb|CAL53836.1|  putative photosystem I subunit V...  58.2    9e-09
gi|37776921|emb|CAD23154.1|  putative photosystem I chain V precu  52.0    6e-07 
gi|131191|sp|P14224|PSAG_CHLRE  Photosystem I reaction center ...  39.7    0.003
gi|17369611|sp|Q9SPM4|PSAG_TORRU  Photosystem I reaction cente...  38.1    0.009
gi|478529|pir||PQ0690  photosystem I 8.0K G chain - common tob...  37.7    0.012
gi|12831160|gb|AAK08496.1|AF329274_1  PsaG-like protein [Dunaliel  30.8    1.5  
gi|92869607|gb|ABE79229.1|  conserved hypothetical protein [Medic  29.3    4.3  
gi|32488449|emb|CAE03382.1|  OSJNBa0004N05.6 [Oryza sativa (japon  29.3    4.3   
gi|115481514|ref|NP_001064350.1|  Os10g0324600 [Oryza sativa (...  28.5    7.3   
gi|15233866|ref|NP_194988.1|  nucleic acid binding [Arabidopsi...  28.5    7.3   
gi|15217226|gb|AAK92570.1|AC074354_4  Hypothetical protein [Oryza  28.5    7.3   
gi|51090861|dbj|BAD35409.1|  hypothetical protein [Oryza sativa (  28.5    7.3  
gi|115447051|ref|NP_001047305.1|  Os02g0594300 [Oryza sativa (...  28.5    7.3   
gi|544734|gb|AAB29512.1|  PSI-G=8 kda photosystem I psaG produ...  28.1    9.6  
gi|68566314|sp|Q43364|EFTUB_NICSY  Elongation factor TuB, chlo...  28.1    9.6

Alignments

 

>gi|15222757|ref|NP_175963.1|  unknown protein [Arabidopsis thaliana]
 gi|20143884|sp|Q9S7N7|PSAG_ARATH  Photosystem I reaction center subunit V, chloroplast precursor 
(PSI-G)
 gi|11692916|gb|AAG40061.1|AF324710_1  At1g55670 [Arabidopsis thaliana]
 gi|11908046|gb|AAG41452.1|AF326870_1  putative photosystem I subunit V precursor [Arabidopsis thaliana]
 gi|12642864|gb|AAK00374.1|AF339692_1  putative photosystem I subunit V precursor [Arabidopsis thaliana]
 gi|14190363|gb|AAK55662.1|AF378859_1  At1g55670/F20N2_3 [Arabidopsis thaliana]
 gi|5734520|emb|CAB52748.1|  photosystem I subunit V precursor [Arabidopsis thaliana]
 gi|15215865|gb|AAK91476.1|  At1g55670/F20N2_3 [Arabidopsis thaliana]
Length=160

 Score =  105 bits (261),  Expect(2) = 1e-30
 Identities = 55/70 (78%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
 Frame = +3

Query  189  SPQGNSSASLAVKAELSAPLVISLSTGLSLFLGRFVFFNFQRENVAKQ-VPEQNGLTHFE  365
            S  G  S+S  V+AELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQ +PEQNG THFE
Sbjct  47   STTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFE  106

Query  366  AGDTRAKEYV  395
            AGD RAKEYV
Sbjct  107  AGDDRAKEYV  116


 Score = 47.0 bits (110),  Expect(2) = 1e-30
 Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
 Frame = +2

Query  53   MAAASSALFTPTFSSIQKNHLTPSSISFQGLRPLSKGKTS--LPKVALTAR  199
            MA ++SAL +PT  S   +H  P+SISF GLRPL  G +S  LPK++ T R
Sbjct  1    MATSASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGR  51


>gi|52001191|gb|AAU21476.1|  chloroplast photosystem I reaction center V [Camellia sinensis]
Length=145

 Score =  109 bits (272),  Expect(2) = 1e-25
 Identities = 53/59 (89%), Positives = 57/59 (96%), Gaps = 0/59 (0%)
 Frame = +3

Query  219  AVKAELSAPLVISLSTGLSLFLGRFVFFNFQRENVAKQVPEQNGLTHFEAGDTRAKEYV  395
            A+KAEL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQVPEQNG+THFEAGD+RAKEYV
Sbjct  43   AIKAELNTSLVISLSTGLSLFLGRFVFFNFQRENVAKQVPEQNGMTHFEAGDSRAKEYV  101


 Score = 25.8 bits (55),  Expect(2) = 1e-25
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 0/29 (0%)
 Frame = +2

Query  113  LTPSSISFQGLRPLSKGKTSLPKVALTAR  199
            +T +  +FQGLRP +K   SL K   T +
Sbjct  5    VTQTPATFQGLRPTTKSPLSLTKSISTVK  33


>gi|131194|sp|P12357|PSAG_SPIOL  Photosystem I reaction center subunit V, chloroplast precursor 
(PSI-G) (Photosystem I 9 kDa protein)
 gi|21299|emb|CAA31524.1|  unnamed protein product [Spinacia oleracea]
 gi|226167|prf||1413236B  photosystem I reaction center V
Length=167

 Score =  107 bits (267),  Expect = 1e-23
 Identities = 57/73 (78%), Positives = 62/73 (84%), Gaps = 2/73 (2%)
 Frame = +3

Query  183  SPSPQGNSSA--SLAVKAELSAPLVISLSTGLSLFLGRFVFFNFQRENVAKQVPEQNGLT  356
            S S    SSA  S+  +AELS  LVISLSTGLSLFLGRFVFFNFQREN+AKQVPEQNG++
Sbjct  52   SSSSLSMSSARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMS  111

Query  357  HFEAGDTRAKEYV  395
            HFEAGDTRAKEYV
Sbjct  112  HFEAGDTRAKEYV  124


>gi|115479799|ref|NP_001063493.1|  Os09g0481200 [Oryza sativa (japonica cultivar-group)]
 gi|50725867|dbj|BAD33396.1|  putative Photosystem I reaction center subunit V [Oryza sativa 
(japonica cultivar-group)]
 gi|52077301|dbj|BAD46343.1|  putative Photosystem I reaction center subunit V [Oryza sativa 
(japonica cultivar-group)]
 gi|113631726|dbj|BAF25407.1|  Os09g0481200 [Oryza sativa (japonica cultivar-group)]
Length=141

 Score =  102 bits (253),  Expect = 5e-22
 Identities = 50/60 (83%), Positives = 55/60 (91%), Gaps = 0/60 (0%)
 Frame = +3

Query  213  SLAVKAELSAPLVISLSTGLSLFLGRFVFFNFQRENVAKQVPEQNGLTHFEAGDTRAKEY  392
            S+A +AELS  LVISLSTG+SLFLGRFVFFNFQRENVAKQVPEQNG THF+AGD RAKE+
Sbjct  38   SVAARAELSPSLVISLSTGVSLFLGRFVFFNFQRENVAKQVPEQNGKTHFDAGDERAKEF  97


>gi|86438618|emb|CAJ26374.1|  photosystem 1 subunit 5 [Brachypodium sylvaticum]
Length=143

 Score = 99.8 bits (247),  Expect = 3e-21
 Identities = 53/81 (65%), Positives = 60/81 (74%), Gaps = 3/81 (3%)
 Frame = +3

Query  150  PSARAKPHYPRSPSPQGNSSASLAVKAELSAPLVISLSTGLSLFLGRFVFFNFQRENVAK  329
            PS RA   +  +P     +  S+A +A L   +VISLSTGLSLFLGRFVFFNFQRENVAK
Sbjct  21   PSPRAAVSFRAAPP---TARRSVAARAALEPSVVISLSTGLSLFLGRFVFFNFQRENVAK  77

Query  330  QVPEQNGLTHFEAGDTRAKEY  392
            QVP QNG THFEAGD RAKE+
Sbjct  78   QVPAQNGKTHFEAGDQRAKEF  98


>gi|86439712|emb|CAJ75642.1|  photosystem 1 subunit 5 [Triticum aestivum]
Length=143

 Score = 99.4 bits (246),  Expect = 3e-21
 Identities = 53/81 (65%), Positives = 61/81 (75%), Gaps = 3/81 (3%)
 Frame = +3

Query  150  PSARAKPHYPRSPSPQGNSSASLAVKAELSAPLVISLSTGLSLFLGRFVFFNFQRENVAK  329
            PS RA   +  + SP   +  S+A +A L   +VISLSTGLSL +GRFVFFNFQRENVAK
Sbjct  21   PSHRAAVSFRGASSP---ARRSVAARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAK  77

Query  330  QVPEQNGLTHFEAGDTRAKEY  392
            QVPEQNG THFEAGD RAKE+
Sbjct  78   QVPEQNGKTHFEAGDERAKEF  98


>gi|131192|sp|Q00327|PSAG_HORVU  Photosystem I reaction center subunit V, chloroplast precursor 
(PSI-G) (Photosystem I 9 kDa protein)
 gi|19091|emb|CAA42727.1|  photosystem I polypeptide PSI-G precursor [Hordeum vulgare]
Length=143

 Score = 98.2 bits (243),  Expect = 8e-21
 Identities = 54/81 (66%), Positives = 60/81 (74%), Gaps = 3/81 (3%)
 Frame = +3

Query  150  PSARAKPHYPRSPSPQGNSSASLAVKAELSAPLVISLSTGLSLFLGRFVFFNFQRENVAK  329
            PS RA   + R  SP    S  +A +A L   +VISLSTGLSL +GRFVFFNFQRENVAK
Sbjct  21   PSPRAAASF-RGVSPPARRS--VAARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAK  77

Query  330  QVPEQNGLTHFEAGDTRAKEY  392
            QVPEQNG THFEAGD RAKE+
Sbjct  78   QVPEQNGKTHFEAGDERAKEF  98


>gi|131193|sp|P20120|PSAG_PEA  Photosystem I reaction center subunit V (PSI-G) (Photosystem 
I 9 kDa protein)
Length=39

 Score = 64.3 bits (155),  Expect = 1e-10
 Identities = 34/39 (87%), Positives = 36/39 (92%), Gaps = 1/39 (2%)
 Frame = +3

Query  231  ELSAPLVISLSTGLSLFLGRFVFFNFQRENVAKQ-VPEQ  344
            EL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQ +PEQ
Sbjct  1    ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ  39


>gi|116057633|emb|CAL53836.1|  putative photosystem I subunit V precursor (ISS) [Ostreococcus 
tauri]
Length=132

 Score = 58.2 bits (139),  Expect = 9e-09
 Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
 Frame = +3

Query  210  ASLAVKAELSAPLVISLSTGLSLFLGRFVFFNFQRENVAK-QVPEQNGLTHFEAGDTRAK  386
            A +A +A     +V+S S  L+L+LGRFVF  +QR  V +  +P QNG THF AGDTRA+
Sbjct  30   AKVAARAFDDVNVVMSASNALALYLGRFVFLPYQRAQVERVGMPTQNGQTHFAAGDTRAE  89

Query  387  E  389
            E
Sbjct  90   E  90


>gi|37776921|emb|CAD23154.1|  putative photosystem I chain V precursor [Oryza sativa]
Length=74

 Score = 52.0 bits (123),  Expect = 6e-07
 Identities = 23/27 (85%), Positives = 25/27 (92%), Gaps = 0/27 (0%)
 Frame = +3

Query  312  RENVAKQVPEQNGLTHFEAGDTRAKEY  392
            RENVAKQVPEQNG THF+AGD RAKE+
Sbjct  4    RENVAKQVPEQNGKTHFDAGDERAKEF  30


>gi|131191|sp|P14224|PSAG_CHLRE  Photosystem I reaction center subunit V, chloroplast precursor 
(PSI-G) (Light-harvesting complex I 10 kDa protein) (P35 protein)
 gi|18188|emb|CAA33257.1|  polypeptide 35 precursor [Chlamydomonas reinhardtii]
 gi|227068|prf||1613444B  photosystem I P35 protein
Length=126

 Score = 39.7 bits (91),  Expect = 0.003
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +3

Query  141  ASDPSARAKPHYPRSPSPQGNSSASLAVKAELSAPLVISLSTGLSLFLGRFVFFNFQREN  320
            AS PS RA        +P+     ++  KA L   +VIS ST   L +GRFVF  +QR  
Sbjct  5    ASRPSLRASARVAPRRAPR----VAVVTKAALDPQIVISGSTAAFLAIGRFVFLGYQRRE  60

Query  321  V---AKQVPEQNGLTHFE  365
                +   P+  G T+F+
Sbjct  61   ANFDSTVGPKTTGATYFD  78


>gi|17369611|sp|Q9SPM4|PSAG_TORRU  Photosystem I reaction center subunit V, chloroplast precursor 
(PSI-G)
 gi|5669169|gb|AAD46189.1|AF157017_1  photosystem I reaction center subunit V precursor [Tortula ruralis]
Length=112

 Score = 38.1 bits (87),  Expect = 0.009
 Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +3

Query  249  VISLSTGLSLFLGRFVFFNFQRENVAKQ-VPEQNGL  353
            +IS ST   L LGRFVF  FQR  V++  +PEQNG+
Sbjct  21   IISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGV  56


>gi|478529|pir||PQ0690  photosystem I 8.0K G chain - common tobacco (fragment)
 gi|544733|gb|AAB29511.1|  PSI-G=8 kda photosystem I psaG product {N-terminal} [Nicotiana 
sylvestris, leaves, Peptide Chloroplast Partial, 23 aa]
Length=23

 Score = 37.7 bits (86),  Expect = 0.012
 Identities = 19/23 (82%), Positives = 20/23 (86%), Gaps = 0/23 (0%)
 Frame = +3

Query  231  ELSAPLVISLSTGLSLFLGRFVF  299
            EL+  LVISLSTGLSLFLG FVF
Sbjct  1    ELNTSLVISLSTGLSLFLGGFVF  23


>gi|12831160|gb|AAK08496.1|AF329274_1  PsaG-like protein [Dunaliella salina]
Length=143

 Score = 30.8 bits (68),  Expect = 1.5
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +3

Query  204  SSASLAVKAELSAPLVISLSTGLSLFLGRFVFFNFQRENVAKQV------PEQNGLTHFE  365
            S   ++ KA L   + I  ST   L LGRFVF  +QR     +V      P+  G T F+
Sbjct  18   SRKQVSTKAMLEPAVAIGGSTVSFLALGRFVFLPYQRRRTEMEVGPGRLGPKTTGDTFFD  77


>gi|92869607|gb|ABE79229.1|  conserved hypothetical protein [Medicago truncatula]
Length=316

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query  168  PHYPRSPSPQGNSSASLAVKAELSAPLVISLSTGLSLFLGRFV  296
            PH PR+ +  G+SS SL  K   +AP  + L  G S FL  F+
Sbjct  20   PH-PRTVNVVGSSSCSLLNKTFKNAPRRMLLGFGASSFLSHFI  61


>gi|32488449|emb|CAE03382.1|  OSJNBa0004N05.6 [Oryza sativa (japonica cultivar-group)]
Length=179

 Score = 29.3 bits (64),  Expect = 4.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 0/34 (0%)
 Frame = +3

Query  168  PHYPRSPSPQGNSSASLAVKAELSAPLVISLSTG  269
            PH P +PSP   S+  L + A+   P+V + S G
Sbjct  79   PHSPTAPSPWAASAVPLPIDADPPPPVVSTASAG  112


>gi|115481514|ref|NP_001064350.1|  Os10g0324600 [Oryza sativa (japonica cultivar-group)]
 gi|110288876|gb|AAP52964.2|  expressed protein [Oryza sativa (japonica cultivar-group)]
 gi|113638959|dbj|BAF26264.1|  Os10g0324600 [Oryza sativa (japonica cultivar-group)]
Length=337

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 0/23 (0%)
 Frame = +3

Query  126  ASHSKASDPSARAKPHYPRSPSP  194
            ASH+ A+ P   A PH+P  P P
Sbjct  7    ASHAAAAGPPPAADPHHPHYPHP  29


>gi|15233866|ref|NP_194988.1|  nucleic acid binding [Arabidopsis thaliana]
 gi|3063708|emb|CAA18599.1|  putative protein [Arabidopsis thaliana]
 gi|7270166|emb|CAB79979.1|  putative protein [Arabidopsis thaliana]
Length=1544

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 0/36 (0%)
 Frame = +2

Query  68   SALFTPTFSSIQKNHLTPSSISFQGLRPLSKGKTSL  175
            S+ F P  +    N +TP S S   L PL  GK S+
Sbjct  272  SSRFDPNCTQFPSNSVTPGSPSASRLHPLPSGKNSV  307


>gi|15217226|gb|AAK92570.1|AC074354_4  Hypothetical protein [Oryza sativa]
Length=421

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 0/23 (0%)
 Frame = +3

Query  126  ASHSKASDPSARAKPHYPRSPSP  194
            ASH+ A+ P   A PH+P  P P
Sbjct  7    ASHAAAAGPPPAADPHHPHYPHP  29


>gi|51090861|dbj|BAD35409.1|  hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length=74

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 0/29 (0%)
 Frame = -2

Query  333  LASPRSLFGS*RTQTYPRRGRDPC*GLSQ  247
            L+SP+SL G  R+   P R   PC GL Q
Sbjct  40   LSSPKSLAGCGRSDWAPNRSDRPCPGLDQ  68


>gi|115447051|ref|NP_001047305.1|  Os02g0594300 [Oryza sativa (japonica cultivar-group)]
 gi|46805030|dbj|BAD16895.1|  enhancer of shoot regeneration ESR1-like protein [Oryza sativa 
(japonica cultivar-group)]
 gi|46805282|dbj|BAD16814.1|  enhancer of shoot regeneration ESR1-like protein [Oryza sativa 
(japonica cultivar-group)]
 gi|113536836|dbj|BAF09219.1|  Os02g0594300 [Oryza sativa (japonica cultivar-group)]
Length=345

 Score = 28.5 bits (62),  Expect = 7.3
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 0/31 (0%)
 Frame = +3

Query  129  SHSKASDPSARAKPHYPRSPSPQGNSSASLA  221
            SHS+A +PS R     P  P P   SSA+ A
Sbjct  187  SHSRAHNPSTRPPTSAPPPPPPAAASSATTA  217


>gi|544734|gb|AAB29512.1|  PSI-G=8 kda photosystem I psaG product {N-terminal} [Nicotiana 
tabacum, leaves, Peptide Chloroplast Partial, 19 aa]
Length=19

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 14/19 (73%), Positives = 15/19 (78%), Gaps = 0/19 (0%)
 Frame = +3

Query  231  ELSAPLVISLSTGLSLFLG  287
            EL+  LVISLSTGLS F G
Sbjct  1    ELNTSLVISLSTGLSQFXG  19


>gi|68566314|sp|Q43364|EFTUB_NICSY  Elongation factor TuB, chloroplast precursor (EF-TuB)
 gi|459241|dbj|BAA02028.1|  chloroplast elongation factor TuB(EF-TuB) [Nicotiana sylvestris]
Length=485

 Score = 28.1 bits (61),  Expect = 9.6
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +3

Query  126  ASHSKAS-DPSARAKPHYPRSPSPQGNSSASLAVKAELSAPLVISLS---TGLSLFL  284
            AS S AS   +A  K  YP SPS   +SS + AV    S+ L++S S   T  +LFL
Sbjct  2    ASISAASATATASTKLAYPYSPSSSSSSSNTAAVFPSNSSKLILSSSFTPTPSTLFL  58

  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding 
environmental samples
    Posted date:  Jan 15, 2007  4:53 AM
  Number of letters in database: 101,054,579
  Number of sequences in database:  283,349
Lambda     K      H
   0.318    0.134    0.401 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 283349
Number of Hits to DB: 242
Number of extensions: 1
Number of successful extensions: 0
Number of sequences better than 10: 0
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 397
Length of database: 101054579
Length adjustment: 98
Effective length of query: 299
Effective length of database: 73286377
Effective search space: 2491736818
Effective search space used: 2491736818
T: 12
A: 40
X1: 16 (7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 61 (28.1 bits)